LOCUS       NM_001428071            1306 bp    mRNA    linear   PLN 14-FEB-2024
DEFINITION  Oryza sativa Japonica Group UBP1-associated proteins 1C
            (LOC4324202), mRNA.
ACCESSION   NM_001428071 XM_015769874
VERSION     NM_001428071.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1306)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK059387.1, AK103402.1 and CI055713.1.
            
            On Feb 14, 2024 this sequence version replaced XM_015769874.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK059387.1, AK103402.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-277               AK059387.1         5-281
            278-765             AK103402.1         242-729
            766-1306            CI055713.1         1-541
FEATURES             Location/Qualifiers
     source          1..1306
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="1"
                     /map="1"
     gene            1..1306
                     /gene="LOC4324202"
                     /note="UBP1-associated proteins 1C"
                     /db_xref="GeneID:4324202"
     exon            1..195
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    52..54
                     /gene="LOC4324202"
                     /note="upstream in-frame stop codon"
     CDS             109..1023
                     /gene="LOC4324202"
                     /note="Os01g0583200; B1097D05.39; RNA-binding
                     protein-like"
                     /codon_start=1
                     /product="UBP1-associated proteins 1C"
                     /protein_id="NP_001415000.1"
                     /db_xref="GeneID:4324202"
                     /translation="

MVWFQCEDCGDDLKKPKLAGHFRSCSAYRLSCIDCGEFFTQETVQGHTQCISEAEKYGPKGQNKASNNAQGKQDKPKPNADVDINVGLSTYPPWFCSLCKTTTTSKQTLLSHADGKKHRAKAKAYHASQKQANGVEQTPKETVGAPVTESAQVNNERSTENERGVDNDAAKRKRANDTTSEEPDNTKRQNNLSVNSGEVVQSSNEEAETKAKSKGTKDELVSSANLKGSKKQKIKWKKIITKVLQTNPDGVLKLKKLQKLVTKELLECGLTEDKEQMHAILMDKISSSSRFSVDGKRIRLVAKD"

     exon            196..270
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
     exon            271..398
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
     exon            399..846
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
     exon            847..960
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1306
                     /gene="LOC4324202"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

acaaatcccaattgccgctgcgtccttcgcctcgcctcgcacccaaaaccctagcgccgcccgctcgtcggaggtgaagaggcggcggcggcggcggcagcgtcgacaatggtgtggttccagtgcgaggactgcggggacgacctcaagaagcccaagctcgccggccacttccgctcctgctccgcctacaggctctcctgcatcgactgcggcgagttcttcacccaggagaccgtccagggccacacccagtgcatctccgaggctgagaagtatggtcccaagggacagaacaaagcatccaacaatgcacagggcaagcaagacaagccaaagccaaatgctgatgttgatatcaatgtcgggctgtcgacatatcccccttggttctgcagcctttgcaagacgacaaccactagcaagcaaacactcttatcacatgcagatggcaagaagcacagggcaaaagcaaaagcctatcatgcttctcagaagcaagcaaatggagttgaacaaactcccaaggaaactgttggtgcacctgtgacagaatcagcacaagtaaacaatgagaggagtactgaaaatgaaagaggtgtggacaacgatgcagcaaagagaaagagagcaaatgatacgacctcagaagagccagataacacgaaaagacagaacaacttgagcgtgaacagtggagaagtggtacaatcttcaaatgaagaggcagaaaccaaagcaaagagcaagggtactaaagatgaattagttagtagtgccaaccttaaaggcagtaaaaagcagaaaatcaagtggaagaaaattattaccaaagtacttcagacgaatccagatggagttctgaagttaaagaagctacaaaagctagtaactaaggaacttctggaatgtggtctgacagaagataaggagcagatgcacgctatcttgatggataagatttcttcaagctccaggttttctgttgatggcaagcgcattagattggttgcaaaggattgagagtaatggatcatgccccctgacagctgattccttgtcgacagatcaatgatggtcttacagtttgttatggcgtaaagccgagttttggttctattatttatacactgtactgcctggatcatccatacgatccgtggaactgatgtgaattttgcatttgattgttttgggagcaacagccgatctgatcgcaaactgatcttggcaacacggcttgctatcaatgacatcaatatttcatggccttgttttgtgtattttaaattaaataagctgatac

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