2024-09-29 12:30:05, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001421947 2498 bp mRNA linear PLN 26-MAY-2023 DEFINITION Oryza sativa Japonica Group protein LAZ1 (LOC4342119), mRNA. ACCESSION NM_001421947 XM_015785421 VERSION NM_001421947.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2498) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK058839.1, AK112103.1 and AK111844.1. On May 26, 2023 this sequence version replaced XM_015785421.2. ##Evidence-Data-START## Transcript exon combination :: AK112103.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMD00008650, SAMD00020310 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-330 AK058839.1 1-330 331-972 AK112103.1 308-949 973-2092 AK111844.1 896-2015 2093-2498 AK111844.1 2017-2422 FEATURES Location/Qualifiers source 1..2498 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="6" /map="6" gene 1..2498 /gene="LOC4342119" /gene_synonym="OsMac1" /note="protein LAZ1" /db_xref="GeneID:4342119" exon 1..275 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 276..399 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 400..752 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" misc_feature 582..584 /gene="LOC4342119" /gene_synonym="OsMac1" /note="upstream in-frame stop codon" CDS 603..2042 /gene="LOC4342119" /gene_synonym="OsMac1" /note="MAP kinase activating protein-like; P0017G10.9-1; Os06g0726600" /codon_start=1 /product="protein LAZ1" /protein_id="NP_001408876.1" /db_xref="GeneID:4342119" /translation="
MELAEQLYSVFRSYAPPIWASITAGIFVITSLSLSLFLLFNHLSAYKNPEEQKFLVGVILMVPCYAVESYISLVNPSISVDIEILRDGYEAFAMYCFGRYLVACLGGEDRTIEFLKREGSSGSDVPLLDHETGQRYVNHPFPMNYMLKPWPLGEWFYLVIKFGLVQYVIIKTICAILAVILESFGVYCEGEFKWNCGYSYTAVVLNFSQSWALYCLVQFYAAIKDELAHIKPLAKFLTFKSIVFLTWWQGVVIALLYNWGLLRGPIAQELQFKSSIQDFIICIEMGVASIAHLYVFPAKPYEMMGDRFIGGVSVLGDYASVDCPLDPDEVKDSERPTKTRLPQPGDRVRCSTGIKESVRDVVLGGGEYIVNDLKFTVNHAVEPINEKLHRISQNIKKHEKEKKKTNDDSCINSQQSLSRVISGIDDPLLNGSLSDNSGQKKSRKHRRKSGYGSAESGGESSDQGLGGYEIRGHRWITRE"
misc_feature 660..1505 /gene="LOC4342119" /gene_synonym="OsMac1" /note="Organic solute transporter Ostalpha; Region: Solute_trans_a; pfam03619" /db_xref="CDD:460991" exon 753..809 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 810..918 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 919..1103 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 1104..1192 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 1193..1454 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 1455..1706 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" exon 1707..2498 /gene="LOC4342119" /gene_synonym="OsMac1" /inference="alignment:Splign:2.1.0" ORIGIN
atcgaacgtatcagatcgagagcacgctacgcctacgcgggagggttcctcctcctccgccccccatccatccaaatccaatcgccgtcgtcgatcccctcagccctgctgccgccgccccctttcagcgcaaatcgtcgatttcccccgcctccatctcccgccgctcgccgccgggaccccgcaccgcaaatcgtcgtcctgcctgcatcttcgattccctccgccgcccgtggttccgctccttagctgcccatcttcacatctccctcaagctacaaaaaaatactcaggtttcagatcatttttcgaggttggaattgctgcaggatcaagcgaagcctcgtcaggccatgccctcgtctcattcctcagcttgcagagtccagttccaagcagttgaatactaccgtgcatttggtggaagaacataatcctacctcttggtgtctgcctcctaataaaggactccagtatcagttggggcttgtgaattatgatactttatgaaccatattgtgaaacaggaggaggctgtcaatatattggtagctctaatagtggcgtactttgagtagaattgagggagacaagagagaacaatggaattggcagagcagctgtactcagttttcaggagctatgcgccccctatttgggcttcaatcaccgctggcatttttgtcatcacctcgctttcactatctctgttcttgctgttcaatcatctgtcagcctacaagaacccagaggagcagaagtttcttgtcggtgttattctcatggtcccatgctatgcggtcgagtcgtacatatcattggtgaatccatcaattagtgttgatattgagattctgcgagatggctacgaggcatttgctatgtactgttttgggcggtatctagttgcttgcttaggtggggaagataggacaattgaatttctgaagagggaaggcagttcaggttctgatgtaccacttttagaccatgaaactggacaacgatatgtgaaccatccttttccaatgaactacatgctgaaaccttggcctctaggagaatggttctacttggttattaagtttgggcttgttcaatatgtgataataaagacaatttgtgctattcttgcggtgattcttgaatcctttggagtgtactgtgaaggagagtttaagtggaactgtgggtactcttacactgctgtggttctcaattttagtcagtcatgggccttgtattgtctggttcagttctatgctgccataaaggatgaactagcccatataaagcctcttgcaaagtttctgacattcaagtctatagtcttcttaacatggtggcaaggtgtggtgattgcattgctgtacaattggggcttgctaagaggtcctattgctcaagagttgcagttcaagtccagtattcaggacttcattatctgcatagagatgggagttgcttctattgcccacctgtatgtgttccctgccaagccatatgagatgatgggtgatcgtttcattggaggggtttcagttctcggagactatgcttcagttgattgccctctagatccagatgaagttaaggacagtgagcgaccaaccaagactaggcttccccagccaggcgatcgtgtcagatgctccactggcataaaagaaagtgttcgtgacgtcgtacttggaggaggagaatatattgtgaatgacctgaagttcaccgtcaatcatgctgtggaaccaatcaatgaaaagctgcacaggatatcacagaacatcaaaaagcatgagaaagaaaagaagaaaacaaatgacgatagctgcataaattcacaacaatccttgagcagggtaatcagcggtattgacgatcctctcctgaatgggagcttaagtgataatagtggtcagaagaaatcacggaagcatcgcaggaaatctgggtacgggagcgcagagagtggaggagagagcagtgatcaaggattaggtgggtatgaaatccgagggcacagatggattactagggagtaaggattaatgctctgaaacatgaatttcttggtctggatcttccttggaggctaaatgcttactaccacgcaaacagatgacagagactcgaattaggttgaaacctaggatctctttgtgaggacactgcaatgctgcagattgagctagcagatgacattatctccaggttgttcaactgacatttcagatgctagggtcttgatgataaacattgcaggcatgcatgcatcaaattgtgaagcatggcaggttaactaattcatgcttgcattatcagttgtaaaggacagttttttccacaaaagtatataagattctgatttgaggaagaaatgtcttgcaagctttgtttttggtgttgtcaagtttttgttatatgtacttacagtatattgttcattctttcattcaaataaattataaaggagggcgtccttttacctccctggcatt
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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