2024-05-04 23:17:12, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001420218 1895 bp mRNA linear PLN 27-APR-2023 DEFINITION Oryza sativa Japonica Group acyl transferase 7-like (LOC4337975), mRNA. ACCESSION NM_001420218 XM_015781965 VERSION NM_001420218.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1895) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from AK100028.1. On Apr 27, 2023 this sequence version replaced XM_015781965.2. ##Evidence-Data-START## Transcript exon combination :: AK100028.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1895 AK100028.1 2-1896 FEATURES Location/Qualifiers source 1..1895 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="5" /map="5" gene 1..1895 /gene="LOC4337975" /gene_synonym="AT7; OsAT7" /note="acyl transferase 7-like" /db_xref="GeneID:4337975" exon 1..563 /gene="LOC4337975" /gene_synonym="AT7; OsAT7" /inference="alignment:Splign:2.1.0" CDS 87..1406 /gene="LOC4337975" /gene_synonym="AT7; OsAT7" /EC_number="2.3.1.-" /note="LOC_Os05g08640" /codon_start=1 /product="acyl transferase 7" /protein_id="NP_001407147.1" /db_xref="GeneID:4337975" /translation="
MAAAAPDKAVERLSQKLVHPSSPTPSAPLRLSWLDRYPTQMALIESLHVFKPDPARDAAGQGLAPARAIETALARALVEYYPLAGRLAVSRDSGELQVDCCGGAGGHGGVWFIEAAVPCRLEDVDYLEYPLAISKDELLPHPRPRPTRDEEDKLILLVQVTTFACGGFVVGFRFSHAVADGPGAAQFMGAVGELARGGERITVAPSWGRDAVPDPAGAMVGALPEPAGASRLEYLAIDISADYINHFKSQFAAATGGARCSAFEVLIAKAWQSRTRAAAFDPSTPINLSFAMNARPLLLPRGGAGFYGNCYYIMRVASTAGRVATASVTDVVRMIREGKKRLPSEFARWAAGEMAGVDPYQITSDYRTLLVSDWTRLGFAEVDYGWGPPGHVVPLTNLDYIATCILVKPWAHKPGARLITQCVTPDRVTAFHDAMVDIN"
misc_feature 87..161 /gene="LOC4337975" /gene_synonym="AT7; OsAT7" /note="propagated from UniProtKB/Swiss-Prot (Q0DKA5.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" exon 564..1895 /gene="LOC4337975" /gene_synonym="AT7; OsAT7" /inference="alignment:Splign:2.1.0" ORIGIN
attcaattcactcccccctccagcttctcactccccacacgcagcttccagctcatcaccccccacaaccacctcctccccctcccatggcggcggcggcgccggacaaggcggtggagcggctgtcccagaagctggtgcacccgtcgtcccccacgccgtcggccccgctccgcctctcctggctcgaccgctaccccacccagatggcgctcatcgagtcgctccacgtcttcaagcccgacccggcgagggacgccgcggggcaggggctcgcccccgcgcgcgccatcgagacggccctcgcgagagccctcgtcgagtactacccgctcgccgggaggctcgccgtctcccgggactccggcgagctccaggtggattgctgcggcggcgccggcggccatggcggggtgtggttcatcgaggcggctgtcccgtgccggctcgaggacgtggattacctcgagtaccctctcgccatctccaaggacgagctgctcccccacccgcgcccccgccccacccgcgacgaggaagacaagctcatcctgctcgtccaggtgacgacgttcgcgtgcggcgggttcgtggtggggttcaggttcagccacgcggtggcggacggcccgggggcggcgcagttcatgggcgcggtcggcgagctcgcccgcggcggcgagcgcatcacggtggccccgtcgtgggggcgcgacgcggtgcccgacccggccggcgccatggtcggcgccctcccggagccggccggcgcgtcccgcctcgagtacctcgccatcgacatctccgccgactacatcaaccacttcaagtcccagttcgcggcggccaccggcggcgcccgctgctccgccttcgaggtgctcatcgccaaggcatggcagagccgcacccgcgccgccgcgttcgacccctcgacgccgatcaacctctccttcgccatgaacgcccggccgctcctcctcccgcgcggcggcgccgggttctacggcaactgctactacatcatgcgggtggcctccaccgccgggagggtggcgacggcgagcgtcaccgacgtggtgaggatgatccgggaggggaagaagcggctcccgtcggagttcgcgcggtgggccgccggagagatggccggagtcgacccgtaccagatcacctccgactaccggacgctgctggtctccgactggacgcggctgggcttcgccgaggtggactacgggtggggcccaccgggccacgtcgtgccgctcacgaacctggactacatcgccacgtgtatcctcgtcaagccctgggcccacaaaccaggggcacggctcatcacccagtgcgtcacacccgaccgcgtcaccgccttccacgacgccatggtggacatcaactaatttattattataattataattattattattattattattcccttttctttttattttattttttttaccacgccacctttttcactttgtttttttaccactacttccttataattaattaattaattaattagatattaataatgaagaattaagggtaaaaaaaggagaggataaagaaaggtgaaaagtacatattgatattgagggtacaggtagatggtagtagttgttggcattattagtgggattggtattggattcctttggtgttgtttggtcaagtgtatactggagaacagctactacatgctgggtattccttttatttttttttcttttttttgggatcaaaagctggaattggtgggaagccaccaactaaccagtatgtcccccttgataagtgtaccatatattgtattcaatttttatcttattttcagaatggtatatataagctggcaaggtgtacagcctctttagttg
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@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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