LOCUS       NM_001417438            1904 bp    mRNA    linear   PLN 18-FEB-2024
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX19-like (LOC4332147), mRNA.
ACCESSION   NM_001417438 XM_015772357
VERSION     NM_001417438.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1904)
  AUTHORS   Agalou,A., Purwantomo,S., Overnas,E., Johannesson,H., Zhu,X.,
            Estiati,A., de Kam,R.J., Engstrom,P., Slamet-Loedin,I.H., Zhu,Z.,
            Wang,M., Xiong,L., Meijer,A.H. and Ouwerkerk,P.B.
  TITLE     A genome-wide survey of HD-Zip genes in rice and analysis of
            drought-responsive family members
  JOURNAL   Plant Mol Biol 66 (1-2), 87-103 (2008)
   PUBMED   17999151
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014959.1.
            
            On Mar 4, 2023 this sequence version replaced XM_015772357.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00008650,
                              SAMD00020310 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-828               AP014959.1         6931566-6932393
            829-908             AP014959.1         6932592-6932671
            909-1904            AP014959.1         6932983-6933978
FEATURES             Location/Qualifiers
     source          1..1904
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="3"
                     /map="3"
     gene            1..1904
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="homeobox-leucine zipper protein HOX19-like"
                     /db_xref="GeneID:4332147"
     exon            1..828
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    163..165
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="upstream in-frame stop codon"
     CDS             367..1254
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="Os03g0231150; HD-ZIP protein HOX19; Homeodomain
                     transcription factor HOX19; LOC_Os03g12860"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX19"
                     /protein_id="NP_001404367.1"
                     /db_xref="GeneID:4332147"
                     /translation="

MAQEDVGHLSDAGLALGLSLGGGGGGTTDAAAAHRGGCRRPSPSSQCPPLEPSLTLSLPDDAAAGAAATATATASGGGGPAHSVSSLSVGAAAAAAVKRERAEEADGERVSSTAAGRDDDDDGSTRKKLRLTKEQSALLEDRFREHSTLNPVRHKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGPGRTTTHHFFNPFTHSAAC"

     misc_feature    406..621
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8GRL4.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    661..765
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8GRL4.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    742..915
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    919..1053
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8GRL4.1);
                     Region: Leucine-zipper"
     misc_feature    919..1038
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     misc_feature    1024..1083
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8GRL4.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            829..908
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /inference="alignment:Splign:2.1.0"
     exon            909..1904
                     /gene="LOC4332147"
                     /gene_synonym="Hox19; OJ1017C11.5; OJ1781E12.8; OsHox19"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ggctagcagaattggcttggctcgtcaaacctttggagtgcgtccgcgtgtgcgagctgcgcccgtgtgatgtgggcgggtgggtgttcgtgtctccgcttgtctccccgcggcgccctcctcaaatattctcaactccccaaccaattcattcccccgagctgagctgagctctcattccttccttctcctttccgccggcctcgcctctcgtctcctcctctcccctaccgatacgcacgctcgcttgcttgcacctcgcgcgcgagagacgagagagagacggcgagccctggcacgcacgagaagcgaatcgaagtggcggcgacaggagcagctgctgctggtggattatccgtcgtcaacatggctcaggaggacgtcggtcacctgagcgacgccggcctggcgctgggcctgtccctcggcgggggaggaggagggacgaccgacgcggcggcggcgcaccgtggcggctgccggcggccgtcgccgtcgtcgcagtgcccgccgctggagccgtcgctgaccctgagcttgcccgacgacgcggcggccggcgcggccgcgaccgcgaccgcgaccgcgtccggcgggggcggccctgcgcacagcgtgtcgtcgctgtccgtcggcgcggcggcggcggcggccgtgaagagggagcgcgcggaggaggccgacggcgagagggtgtcgtcgacggcggccgggcgtgacgacgacgacgacgggagcacccgcaagaagctccggctgaccaaggagcagtccgcgctcctggaggaccgcttccgggagcacagcacgctcaacccggtacgtcacaagcagaaagtcgctttagcgaagcaactgaacctcaggccaaggcaggtggaggtctggttccaaaacagaagagcaaggacaaagctgaagcagacggaggtggactgcgagttcctgaagcgctgctgcgagacgctcaccgaggagaaccgtcggctgcagcgcgagctgcaggagctccgcgcgctcaagttcgccccgccgccgccgtcctcggcggcccaccagccgtcgccggcgccaccggcgccgttctacatgcaactcccggccgccacgctcaccatctgcccgtcctgcgagcgcgtcggcgggcccgcgtccgccgccaaggtcgtcgccgccgacgggaccaaggccggccccggccggaccaccacccaccacttcttcaaccccttcacccactccgccgcctgctgatccgatccatccatcctcatgaatctgcagttcgatcgatcgatcgatctgcaacaccaaacagacatagcactgctgctgactgctagctaaagcttagtactacctcacgtcacaggtaacatatacacgtgacatacatggcgattggcgacatgatcatcatgcatcatcatcctctccttgagctactgtttcttgccctgggggattccagcttccattagctagacagtccatctcagtcaaatcaatcataggcttaatgataggattagtcaaattaattatagccgggccacagctagtacccgatcaatgtatatttttgtgcatgcatgtaagtatgtaactgtgtgcccccctctcatcactagttagctttacttttcttttttgtttcacaggctagttaattttcagaggggatcatcatggggcagtgcagtagctagatagattaagcttgtatactagcactactgatggattaaaattcttagatagtgtcacacacgcacagtgttggatcggatgacgacatgagctagcttagctagcatgcctgcctccctcctgttcgctcggccctgtcgggtgcgtgtacatgtgtttacttttgtatggatatacgtctcaatgattgtgtg

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