LOCUS       NM_001416820            3453 bp    mRNA    linear   PLN 18-FEB-2024
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC5-like (LOC4330297), mRNA.
ACCESSION   NM_001416820 XM_015770130
VERSION     NM_001416820.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AK111544.1, AB101648.1 and AU108690.1.
            
            On Feb 17, 2023 this sequence version replaced XM_015770130.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK111544.1, AB101648.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00008650,
                                           SAMD00020310 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1756              AK111544.1         3-1758
            1757-3020           AB101648.1         1439-2702
            3021-3453           AU108690.1         1-433
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..3453
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="homeobox-leucine zipper protein ROC5-like"
                     /db_xref="GeneID:4330297"
     exon            1..553
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    350..352
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="upstream in-frame stop codon"
     CDS             455..2869
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="P0657H12.28; GL2-type homeobox genes; GL2-type
                     homeodomain protein; GLABRA 2-like homeobox protein 5;
                     HD-ZIP protein ROC5; Homeodomain transcription factor
                     ROC5; LOC_Os02g45250; Protein RICE OUTERMOST CELL-SPECIFIC
                     5"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC5"
                     /protein_id="NP_001403749.1"
                     /db_xref="GeneID:4330297"
                     /translation="

MSFGGLFDGGGGGGMQFPFASGFASSPALSLALDNAGGGIGGRMLGGGAGAGSSAGGAMTRDTEAENDSRSGSDHLDAISAAGEDDVEDAEPSNSRKRKKRYHRHTPQQIQELEALFKECPHPDEKQRAELSRRLSLDARQVKFWFQNRRTQMKTQLERHENALLKQENDKLRAENMTIREAMRSPMCGSCGSPAMLGEVSLEEQHLRIENARLKDELNRVCALATKFLGKPISLLSPPPLLQPHLSLPMPNSSLELAIGGIGGLGSLGTLPGCMNEFAGGVSSPMGTVITPARATGAAIPSLVGNIDRSVFLELAISAMDELVKMAQMDDPLWVPALPGSPSKEVLNFEEYLHSFLPCIGMKPAGYVSEASRESGLVIIDNSLALVETLMDERRWSDMFSCMIAKATVLEEVSTGIAGSRNGALLLMKAELQVLSPLVPIREVTFLRFCKQLAEGAWAVVDVSIDGLVRDHNSGTAPTGGNVKCRRVPSGCVMQDTPNGYCKVTWVEHTEYDEASVHQLYRPLLRSGLAFGARRWLATLQRQCECLAILMSSATVTANDSTAISQEGKRSMLKLARRMTENFCAGVSASSAREWSKLDGATGSIGEDVRVMARKSVSEPGEPPGVVLSAATSVWVPVAPEKLFNFLRDEQLRAEWDILSNGGPMQEMTQIAKGQRDGNSVSLLRASAVSANQSSMLILQETCTDASGSIVVYAPVDIPAMQLVMNGGDSTYVALLPSGFAILPDGPRIGATGYETGGSLLTVAFQILVNNQPTAKLTVESVETVNNLISCTIKKIKTALQCDA"

     misc_feature    593..772
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="propagated from UniProtKB/Swiss-Prot (Q6EPF0.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    749..916
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    <860..997
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="Basic leucine zipper (bZIP) domain of bZIP
                     transcription factors: a DNA-binding and dimerization
                     domain; Region: bZIP; cl21462"
                     /db_xref="CDD:473870"
     misc_feature    order(872..874,881..883,893..895,902..907,911..916,
                     923..928,935..940,947..952,956..961,968..973,977..982)
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="dimer interface [polypeptide binding]; other site"
                     /db_xref="CDD:269834"
     misc_feature    1379..2089
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1466..1471,1505..1507,1568..1570,1574..1576,
                     1610..1612,1622..1624,1634..1636,1643..1648,1661..1666,
                     1745..1747,1751..1762,1769..1771,1778..1780,1784..1786,
                     1790..1792,1838..1840,1907..1909,1913..1924,1928..1930,
                     1964..1966,1970..1972,1976..1978,1982..1984,1988..1990,
                     1994..1996,2012..2014,2018..2026,2030..2038,2045..2050,
                     2057..2059)
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            554..798
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            799..916
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            917..1633
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..1735
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1736..1963
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2141
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2142..2515
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
     exon            2516..3436
                     /gene="LOC4330297"
                     /gene_synonym="GL2-5; OsJ_07908; Roc5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ctggttctatttttctctcgcgtccacacgacgggggggcctcctctcctctccctcctcccctcgtctccacactagacttgccattttgaccctccgcttgctccctcctcccgttcctatctccccgccgccgtacataagtgctttctttaatcggatgcgtcccctcccctcgccaccagttcgttcgctcgctcgctcgctcgctcgccttgttaatctatccctccctctctcccgcccctccgtccgccgtggagggttagggttttgagggttcgctcgcctcggcgaggctttatctctctaccagtagtctcttactcttcttcgttgggccgtgggttaggaatcgggttgtgaggcgtgtgggaggggcggggtagatccaaggaagaggactttctcgagtttacgccgtggtgttttgcttcggcgaggaggcggcggcatgagctttgggggcctctttgacggcggcggcgggggaggcatgcagttccctttcgccagtggcttcgcgtcctcgccggcgctctccctcgcgctggacaacgccggcggtggcatcggcgggcggatgctcggcggcggcgctggcgctggttctagcgcgggcggcgcgatgacgagggacactgaggcggagaacgacagccggtcgggaagcgaccatctcgacgccatctcggccgccggcgaggacgacgtcgaggacgccgagcccagcaactcccgcaagaggaagaagcgataccaccgccacacgccgcagcagatccaagagctcgaagcgctgttcaaggagtgcccccatccggacgagaagcagcgcgccgagctcagcaggaggctctccctcgatgcgcggcaggtcaagttctggttccagaatcgccgcacgcagatgaagacgcaactggagcggcacgagaacgcgcttctcaagcaggagaacgacaagctgcgcgccgagaacatgacgatccgggaggcgatgcgcagcccaatgtgcggcagctgcgggagccccgccatgctcggggaggtgtccctagaggagcagcacctgcgcatcgagaatgcgcgcctcaaggacgagctcaaccgcgtgtgcgccctcgccaccaagttcctaggcaagcccatctccctcctgtcgccgccgcccttgctgcagccgcacctctcgctgcctatgcctaactcgtcgctggagctagcgatcggaggcatcggtggcttagggtctctcggtacactacccggctgtatgaatgagttcgccggaggcgtgtcgagcccgatgggcacggtgatcacgcctgcgcgcgcaaccggggctgctataccatcgctggtgggtaacatcgacaggtccgtgttcttagagcttgcaatcagcgcgatggacgaacttgtcaagatggcacagatggacgatccattgtgggttccggcactgcctggttctcccagcaaggaggtgctcaactttgaggagtatcttcactccttcctaccgtgcattggcatgaagcctgccggctacgtctctgaggcctcgagggaatccggtctagtcatcatcgacaacagccttgcccttgtagagaccctcatggatgagagacggtggtctgacatgttctcgtgcatgattgctaaggcaacagtgcttgaggaggtgtctaccggcattgcaggaagcagaaatggcgcgttgctgctgatgaaggctgagctacaggtgctctcacctctagtaccaattagggaggttacatttctccggttttgtaagcagctggctgagggtgcatgggcagtagttgatgtgtccattgatggtttagtgagagatcataattctggaacggcacccacaggtggaaatgtgaagtgtaggagggtaccttccggctgtgtgatgcaagacactcccaatgggtattgcaaggtcacatgggttgagcatacggaatacgatgaggcatcagtgcaccagctctaccgtccactccttcggtctggtctcgcctttggcgccaggcgttggcttgcgacgctgcagcgccaatgcgaatgccttgccatcctcatgtcctctgctacagtgacagcaaatgactcgactgctatatcgcaagagggcaagcgaagcatgctgaagctggcacgccggatgacggagaacttctgtgctggggtgagcgcatcgtctgcacgtgaatggagcaagctggatggtgcgaccggtagcatcggggaggacgtgcgcgtgatggcacggaagagcgtgagcgagcctggagagccaccgggcgtggtgctgagcgcggccacctcggtgtgggtgcccgtggctccggagaagctcttcaacttcctgcgcgatgagcagctgcgtgcggagtgggacatcctcagcaatggaggccccatgcaggagatgacccagatcgccaaggggcagcgggatgggaactcggtttcactcctcagggccagtgctgtgagtgccaaccagagcagcatgctgatacttcaggagacgtgcaccgacgcttctggctccattgttgtgtacgctccggtagacatcccggcaatgcagcttgtcatgaatggtggcgactccacctatgttgctctgcttccatccggattcgccatcctgcccgatgggcctcgcatcggcgccaccgggtacgagacgggcggctctctgctcaccgtggcgttccagattcttgtcaacaaccagcccaccgccaagctcaccgtggaatcggtcgagaccgtgaacaatctcatctcctgcaccatcaagaagatcaagacggcgctgcagtgcgacgcctgagtgtttacagtggatttatgtccgcggggatacgccggcggcgacgagcctgagtcaagaacgaaccgcgcgttgaaaaaagaaaataacctttgctaggtgataaggatcttgcttggccggtccttagcacagagcaatggtggtggttcgggtattgactctggcctctaccgtacgccgatctctccccggcagccggtgatcattggatgatacagtaccatgcattttggacatttcttcgaggggttaaacttatgctttagtttcgtcgtcttagggagtcaaacctgtatacttttggcagttggctcatcgttgctctagtgttgtttgttttttgttgtgctatggctgtatgaggtagcctgtactagtagtttctcggaaatgctgggttcatactgtactagtgtcgtccatacttcatataggttatggtacaagtgtaggatcaaattgaaggtttcagaaagtgtatcagccaataatgtctgtttgacagtggcattgctatggatcagctgaaaattgttttttgcaatacacatgggatcaaagctaaaaaaaaaaaaaaaaaa

//