LOCUS       NM_001416679            5511 bp    mRNA    linear   PLN 18-FEB-2024
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            HOX7-like (LOC4329705), mRNA.
ACCESSION   NM_001416679 XM_015770688
VERSION     NM_001416679.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 5511)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014958.1 and AK064118.1.
            
            On Feb 15, 2023 this sequence version replaced XM_015770688.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK064118.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN03003383, SAMN05180951
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4153              AP014958.1         21489895-21494047   c
            4154-4400           AK064118.1         123-369
            4401-4403           AP014958.1         21489645-21489647   c
            4404-5511           AK064118.1         372-1479
FEATURES             Location/Qualifiers
     source          1..5511
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="2"
                     /map="2"
     gene            1..5511
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="homeobox-leucine zipper protein HOX7-like"
                     /db_xref="GeneID:4329705"
     exon            1..4453
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    4156..4158
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="upstream in-frame stop codon"
     CDS             4177..5226
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="P0020C11.33; putative homeodomain leucine zipper
                     protein; HD-ZIP protein HOX7; Homeodomain transcription
                     factor HOX7; LOC_Os02g35770"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein HOX7"
                     /protein_id="NP_001403608.1"
                     /db_xref="GeneID:4329705"
                     /translation="

MELELSLGDSPAPVKATIAPTPVLIPTCMGDEEDLELVLGVRATRRDEQDDQTTCTQSSEEAMEGEEDETRPHGEAPVESLSFPLFVSSAETGSANSEMCTRGFDVNTRPADGGAEAGRPSSPSSMQEASTRQQVADQEAADDEDNGGGGARKKLRLSKEQSSFLEDSFKEHSTLTPKQKSDLANRLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRCCERLTRENRRLQREVAELRGTLRTTTSSYPPLYGLHHLPAAAGTVFRVCPSCEHSKVVAAAASESFSPRVFAGGGAPAAITAAAAVPSPGAGSPPSSSAALFGARRPHFGPFAAAVIPPVLRRQPSATS"

     misc_feature    4300..4734
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0E0A6.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    4630..4803
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(4630..4641,4645..4647,4696..4698,4714..4716,
                     4753..4755,4759..4764,4771..4776,4780..4788,4792..4797)
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(4633..4635,4642..4644,4762..4764,4771..4776,
                     4783..4785)
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    4798..4932
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0E0A6.1);
                     Region: Leucine-zipper"
     misc_feature    4798..4923
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /note="homeobox associated leucin zipper; Region: HALZ;
                     smart00340"
                     /db_xref="CDD:128634"
     exon            4454..4707
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /inference="alignment:Splign:2.1.0"
     exon            4708..4787
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /inference="alignment:Splign:2.1.0"
     exon            4788..5511
                     /gene="LOC4329705"
                     /gene_synonym="HOX7; OsHox7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

taagacattgcctgcatttattgattggatgcctttacggaaaagcatcatatgaaccacaacatgtacatattaaatgaaggatatggatgaagttttggtgattgcatctaaatgcagaaacataacaaacactcaataatatcttatgagatggcggcatacagagaatctgattttaagttgatttcttgtggtcttgtgaaagtgaacaacaattgcaaaataggttattcatgatttggtgttactttgtcatacagctctgtcatagcacataaaatagagtcaaccatgatttatgaaataccaagtgaatgactaaaatgtgcaataccaagtagtttggataacacaatattggagactgtttcaataatagaggctaaaatcacgatacctgaatgaaagttgaatttctgccaattaaagagaatacatactccttgagaaaagcaagctagaagtgctcttaattgccaaattctcttgtaaaaatgtctgcctagttgatactaaagactgattctgttttaaagcctagatttgttttaccttaaaaaaagaactccaagtctttgagccctcactctgtaatccgacaatagctacttatgcagctgtttctgctaacacttcaatcaaagcttttgcatcactggtcaatgtggattgtatggtgagtaaactagagcgaagctttgttgatgacagtgtagcttgcaaatccaattatattggtttatacagagcatccgaatgatggcattctagccattcctatacctcacttttattatagtttagaagacctagtagcaatgaaattgccaactggtttggatagattgatatctgacttcactatttttgtccaaaaaaacaactgatttaagacctgctactacctccatcccaaaatgtaagaagttttagggttggacatgggtattaagaaagtaggtggaatttaatgggagaatgttgtgattggttgagaagaggaagtaggtggagaaattaaatggtggaaggttgtgattggttgagaagagaatgtaggtgaagttgttatattttgggataaattttgaattgttatattgttatattttgggatggagagtaatatatttggctctttaagtcctgctaggaggtgttgtggcttgatttgaatccattttcaactaaattgttctatagttttgaaacatagttttgttatggaaatttagtaccctcactgtatttctttttatgctgacacattgaaaatgctatcacacttatctggaccagttagctttggcatctaggatgatacgcatcaaccttttcctgaaggtttacttctgttgtattgatatgtatgctctttttcaaagcatatcacttggatctacatactcctattatctcattgtaccgcagcttcatgggttgttaggaatgggttttcataaaaaagacaaactatattatgataaaatgaactgtcacatttacattttaaaactagtattgtttgtgctctactaagaaaccttcagcttctccagacccagccttcagaacatcacctgtttaaaaatactaatcgggttttaatacaagagaaatcatagcaagataggtttgctgtttgcatgtggcaaccaagtttctcccgttggttaaacgaaaaaaaagtaaatgcacgataaggcatgaaaaattagttgtattacttttctgttgaagacgcaactctcttgaatataaatataaaatataaccgcagaggacttctcccctgtgttttgttcaaaaaacagcatcatctccaaacttcaaagtattattttctaattttgtgatatgttttaaagtatgaagaacatttctagcacacaatgatgtggcatgataaccaatggtattataatttgtagagagctttattcattctgccttcacatttgagtctttcaatttggagttaaaatttgaatacaattttactatacgttcataatttactgaatggcataaaactaatagaaacttctataaaacaatactgcttctataaaacaatactgagtgcttctttttgttccaaaatataaatacgtactgatccatcaaataagtagtacgttcagactttaaaaacaagggctagatattacaggttttagtgctgatgcttcagtctgccatctctgaaagcaagatatatagatgaaaaaaatagtttttttttctggaacattcaaaatcagttacttgcaaatattcatgagggtcggaattttggcctcatcaccatcagttgagtgctctatactgaactgtctactttcatctatctaaagaatattctcagacgcagacaataataaaatgatcctaaaattcactcatttttctgtcctattaattttagatccataggctgtcaacaggcaatttgtcttcatgataaaattatacccttgaccatgtcaatcaacctttttctctattatatataaccatacattgtcaaagaatattataaatatattactggttctaattgtcaaagtacggccttgctgaaattttactgaaagcaatgttctcattttataaggtatgtgatagattcctactcaaatctttcttttgcaagtagagcaataacagtccttagttgtaatctatgacatccctctagtaatatcattacgtgatgattggaattcatgtgcatgtgtgctgcatgattgatgtagcaataatcaaattttctgcaatgtattccatcaggacaccagaaccttgggttgactaaagtcactgttggaagattcatcagtttcagtataatctttatgcattatcatgcatagcattaaattcattgtggtcaatcagtagtatactgtctcactataccagaatatagtcttagtttgaactcatgcttcatgttaattagtccagatgaaacttgctcaagttacatagcaattctggttagatgcatctaataggagttgctttagcattatttacttgtagaacccacacatctgtactcactacatactcagcgtgtttccttcttaaatcattaacttctttttccttctttttttttctttttgcatagaatcacattctcatactatcatggtcatctatatcagtagatataggccccactcaactcagttcatagatgattccagttcagatttgacatatacagattctagacattaccagtttaccacagctttcctacttaccacctggtgatatacgattaattcaatgagactttattgcattattgttttattttatattcattttataccactggtttattaaataatctttgaggagggataacttctgaagcaatttttatgacaaagtaatttctacctttgttatgctcagtatcactgtctgtacaattaagtgataattcaaaaactgtgaatagatggaagctttcagccatgctttttctttcaaagttaaaaaatgttgtactggaggaaataatctctcctttttccccacctaatttccttctgtttcaagaaacattatggtcagttgacacggctctatcgcaaccattggaaatctttaatatttcctatataacttctgcatattgagacatctatatataagctatgactacaaaaagaaatggtatgttttaattgcctaaaacgaagtacaatgatttggtaataaaaagaccttttatgcatatgaaaaatactaaactactgtgagacataaagagttcatatttctccaatattatttacattcgttaatcagaaagaatatatactgaaggaacaactcaaatatagaatgtccatgcggaaaatcctcttggaaataagcaaaccttcactgatataataattcaagaatcaccgagctaatggcacatgaacttttgattccaattatttgtgattagattgatcaccttccctagcattaaataaacagtaatctaaaactatattctgattacttagtcatcttggatactgttattttattattctggtcaatctctgatgattggcccatcaccactatatatatgatagttgcttattgcttcctctttgcctcctcactccatgacccctctctctccttgatatggaacttgagcttagtctaggggactctccagctccagtgaaggccaccattgcgcctacaccggtgcttataccaacatgcatgggcgatgaagaagacctggagcttgtgcttggagtaagagcaactagaagagatgaacaggatgaccagacaacatgcacacaatcatcagaagaagctatggagggagaagaagatgaaactcgccctcatggcgaggctcctgtcgagagcttgagcttccctctgtttgtatcctctgcagagaccggcagtgcgaattcagagatgtgcacacgtggttttgatgtgaacactcggccagcagacggaggcgcagaggcagggaggccttcgtcaccatcttctatgcaggaggcatccacgagacagcaggtagctgatcaggaagctgcagacgatgaggataacggcggtggtggcgcgaggaagaagttgaggctatccaaggaacagtcctcgtttctggaggatagtttcaaagaacacagcaccctgactccgaaacaaaagagtgatttagctaatcggctcaaccttcgaccgcgccaagtggaggtctggttccaaaacagaagagctaggacgaagctgaagcagacggaggtggactgcgagcatctgaagcgctgctgcgagaggctgacgcgggagaaccggcggctgcagagggaggtggccgagctgcgtggcactctccgaaccaccacgtcgtcgtacccgccgctgtacggcctccaccacctaccagctgctgccggcacggtgttccgggtgtgcccttcatgtgagcatagcaaggtcgttgctgcggcagcttctgagagcttctctccgcgcgtcttcgccggcggcggcgcccctgccgccatcaccgctgccgccgccgtgccgtctccgggcgctggctcaccgccgtcgtcgtccgccgctttgttcggcgccagacggcctcattttggccccttcgccgccgccgtcatcccgccggtgctccgccgccagccatcggcgacgtcgtgaggtcttagcttgcagttttttttcttgcactgcatctgcatgcacatgctaattaaatatgggatatatatatacgcgtgcattgatcatgtaaatgttttcccttttatgtttgttgttcatcaaaatcatgcttatatagggaaatatgtacatatagttctgttcatagaaaagattaaagtcatacatatactttgtaaaaatgtaaaatctaagagtagagtagtgaatgtatctctctcatgcgtgcctaacaaatgctatgaagtgttgtgatcttgg

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