LOCUS       NM_001402797            3363 bp    mRNA    linear   PLN 08-APR-2024
DEFINITION  Oryza sativa Japonica Group homeobox protein HAZ1-like
            (LOC4340565), mRNA.
ACCESSION   NM_001402797 XM_015788641
VERSION     NM_001402797.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3363)
  AUTHORS   Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G.,
            Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A.,
            Soderlund,C. and Wang,G.L.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3363)
  AUTHORS   Ito,Y., Chujo,A., Eiguchi,M. and Kurata,N.
  TITLE     Radial axis differentiation in a globular embryo is marked by HAZ1,
            a PHD-finger homeobox gene of rice
  JOURNAL   Gene 331, 9-15 (2004)
   PUBMED   15094187
REFERENCE   3  (bases 1 to 3363)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AP014962.1, AK121314.1, AB081340.1 and CB664448.1.
            
            On Mar 22, 2022 this sequence version replaced XM_015788641.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AK121314.1, AK101428.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00008650, SAMD00020311
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-50                AP014962.1         6725293-6725342
            51-3181             AK121314.1         1-3131
            3182-3236           AB081340.1         2824-2878
            3237-3363           CB664448.1         1-127               c
FEATURES             Location/Qualifiers
     source          1..3363
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="6"
                     /map="6"
     gene            1..3363
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="homeobox protein HAZ1-like"
                     /db_xref="GeneID:4340565"
     exon            1..325
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            326..1025
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    412..414
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="upstream in-frame stop codon"
     CDS             460..2838
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="PHD-finger family homeodomain protein;
                     LOC_Os06g12400; homeobox protein HOX1A; P0525F01.18;
                     Os06g0229300; homeobox protein HOX1A homolog"
                     /codon_start=1
                     /product="homeobox protein HAZ1"
                     /protein_id="NP_001389726.1"
                     /db_xref="GeneID:4340565"
                     /translation="

MDKTTTSDLVLDNDNIGSNAGSAQEPLTTNGKTSGVRNRYKQTVKRGRKGSQISPSKTYPLRSSHSNVRVLRSASKKKNETPIVPTNDNTAVQRVAKKRKRSKPLRPAPSRVLRSTSEKKNKAHNELLNDGAGVQPAEKKRKVGRPPKGGTPKDDYLMIRKRVRYVLNRMNYEQSLIQAYASEGWKGQSLEKIRPEKELERAKVEILRCKSRIREAFRNLDSLLSEGKLDESMFDSAGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLLAEDIPQGDEGWLCPACDCKIDCIDVLNELQGVKLSIHDSWEKVFPEAASFLNGSKQIDASDLPSDDSADNDYDPTLAQGHKVDEEKSSGEDGGEGLDSDDSSSEDSESSEKEKSKTSQNGRTVDDLGLPSEDSEDGDFDPAGPDSDKEQNDESNSDQSDESDFTSDSDDFCAEIAKSCGQDEISGPSSSQIRTVDRTDGSGFDGEPNAENSNLAFMETELEQDMVLPISSKRQVERLDYKKLYNEAYGKASSDSSDDEEWYGNSTPEKGNLEDSETDSLAESPQGGKGFSRRAPVRYHNNEHTPQNVRPGGSVSDQQTEVLCSNSNGSTAKNRHFGPAINQKLKAHFKEDPYPSRATKENLAQELGLTFNQVTKWFSSTRHYARVAATKKENNIENHTAENNNNTNTVDSIQLRGSNDIVSVDRNDMVSEERTGQSNLNEGTPLRSDTSCGQSVAVTPMVHPENQGNDSSSNVRTPNAKSAEKLIPGLENSDEARRKAVQRELRKMKTGR"

     misc_feature    460..921
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8H991.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1195..1353
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="PHD finger found in Arabidopsis thaliana
                     pathogenesis-related homeodomain protein (PRHA) and
                     similar proteins; Region: PHD_PRHA_like; cd15504"
                     /db_xref="CDD:276979"
     misc_feature    order(1195..1197,1237..1251,1264..1266,1336..1338)
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="putative histone H3 binding site [polypeptide
                     binding]; other site"
                     /db_xref="CDD:276979"
     misc_feature    1471..1944
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8H991.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    <1483..2262
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     Region: MSCRAMM_ClfA; NF033609"
                     /db_xref="CDD:468110"
     misc_feature    2044..2256
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8H991.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    2296..2457
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="Homeodomain; DNA binding domains involved in the
                     transcriptional regulation of key eukaryotic developmental
                     processes; may bind to DNA as monomers or as homo- and/or
                     heterodimers, in a sequence-specific manner; Region:
                     homeodomain; cd00086"
                     /db_xref="CDD:238039"
     misc_feature    order(2296..2304,2308..2310,2359..2361,2377..2379,
                     2416..2418,2422..2427,2434..2439,2443..2451,2455..2457)
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(2296..2298,2305..2307,2425..2427,2434..2439,
                     2446..2448)
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    2488..2550
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8H991.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    2590..2835
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /note="propagated from UniProtKB/Swiss-Prot (Q8H991.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            1026..1191
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1192..1315
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1316..1428
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            1429..2037
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            2038..2328
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            2329..2418
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
     exon            2419..3363
                     /gene="LOC4340565"
                     /gene_synonym="HAZ1; HOX1A"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

ccgtcctgtcctcctcccctctaccgcgcgagtccgactcctttctcgagggcgttggcacttagcaggcggcggctgctgctgcggcggcgcagggcggcggcggtgcagagcggcggcgcacggctgaggcggcggcgtagtcggcgctctccttccctgcttcttccctcctttttcctcccaaccccgactcccggcgaccgagggctgcagctgagggcggcgcgcggaggcggaggcggcgggcgcacggctgcggaggctgctgaggacgagcgcgacaacggaggctgcgcgcggcggaggctgacggcggtgaaaggcacatgctcatttatctagactgtatcttggttataaccccttcctcaaagcatttatccaggacttccctaagcttatcaagactgatctatctgttcctacagaggaggtccatttgcagctatcatttgtatggataagacaactacttctgatcttgttttggacaacgacaacattgggagtaatgctggttctgcacaggagcctcttactaccaatggtaagactagtggggtcagaaatagatacaaacaaactgttaaaaggggaaggaaaggctcccaaatatcaccaagtaaaacatatcccctgagatcttcacatagtaatgtcagggtgcttcgctctgcctcaaaaaagaagaatgagacacctattgtgcccacaaatgataatactgctgttcaacgagttgcgaagaaaaggaaaagaagcaaacccttgagacctgcacctagcagggtgcttcgctctacctcggaaaagaagaataaggcacataatgagcttctaaatgatggtgctggtgttcaaccagccgaaaagaaaagaaaggtaggcagacccccaaaaggaggaactcccaaggacgattacctcatgatccgaaagcgagttagatatgttttgaatcgaatgaactatgaacaaagtttaattcaagcctatgccagtgaaggttggaaaggtcaaagcttggaaaaaataagacctgagaaggagcttgaacgagccaaggtggaaattctgcgatgcaagtcaagaatacgggaagcttttcggaatttggattccctcctatctgagggaaagctggatgaatctatgtttgattctgctggagaaatatctagtgaagatattttctgtgctgcatgtggttcaaaggatgttacattaaaaaatgacataattctttgtgatggaatctgcgacagagggttccaccagtattgtttaaaccctcctttgcttgctgaagatattccacagggggatgaaggatggctttgccctgcatgtgattgcaaaattgactgcatagatgtattaaatgaactccaaggggtcaaactctctatccatgactcttgggagaaagtttttcctgaggcagcatcctttttgaatggttctaagcaaattgatgcgtccgatcttccatcagatgattcagcagacaatgattatgaccctactttggctcaagggcacaaggtggatgaagaaaaatcttctggagaagatggtggtgaaggattagattctgatgactcatcttctgaggattctgaatcttctgagaaggaaaagtctaaaacttcacagaatggaaggacagttgatgatcttggtttgccttctgaggattcagaggatggtgactttgatccagcaggtccagattccgacaaagaacaaaatgatgaatcaaactcagatcagtcagatgaatcagattttacatctgactctgatgatttttgtgctgagattgctaaatcctgtggtcaggatgaaatctcaggcccttcatcatcacaaatcagaacagtcgatcgcaccgatggaagtggttttgatggtgagcctaatgcagaaaattcgaatcttgcatttatggagacagagctagagcaagacatggtgctaccaatttctagtaaacgacaagttgaacgtttggattacaaaaaactgtataatgaggcttatggtaaagcatcatctgattcaagtgacgatgaagagtggtatggaaatagtacacccgaaaaaggtaatttagaagacagtgaaacagattcgcttgctgaatcacctcagggtggaaaaggattctctagaagagcaccagttaggtaccataataatgaacatactccacagaatgtaaggcccggtggttcagtaagcgaccagcaaactgaagtactttgctccaatagcaatggtagcacagccaaaaacagacattttggtcctgcaattaatcagaaactgaaggcacatttcaaggaagatccataccctagtcgtgcaacaaaagaaaatctggcacaagagttaggcctcacatttaatcaggtcactaaatggttttccagtactcgtcattacgcaagagtggcagccacaaaaaaggagaacaacattgaaaatcatacggctgagaataataacaataccaacactgttgatagcatacaactgagaggatccaatgatattgttagtgtagatagaaatgatatggtctccgaggaaaggacaggacaaagtaatctcaatgaaggtactccattaagatcagataccagctgtgggcagagtgtggctgtgactcctatggtacacccagaaaaccagggcaatgattcctcaagtaatgttagaacaccaaatgctaagtctgcggagaaattgatccctggactggaaaattcagatgaggctaggcgaaaggcggtacaacgggaactgagaaagatgaagactggcaggtgaaactccctagtgttcgagttatttgaccagatgtgcagagaagcaagtttttgtatgctgcctagattgcttttaatcagatgtgcagagaagcaaagattttttttccttcttgtttgtggtcgcaaaaaagcctgattgttgtagctgctatgtttgttccctttggctgtccatccagaatttctgataagatgacacttggaagcacatcctgcagcactccagttacaggaatgggttcagttgactgtaacagtttagcatagtccgtagtggacagtagctgtgttgtttgtcgtgccctgtagtcctgtactaccttgaattaggactgctaagtgaaccgatacaagtacttgtgactgaaatctatacctctttttttctttccaccttgggaatttgtagaacaaaaccgatgtctgatgatatgctatctaggaatagcaactgttgtatttttgttcctgtttagggagatttagattctgatgagcagttggttggtagctagcttttaag

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