LOCUS       NM_001402433            3400 bp    mRNA    linear   PLN 30-APR-2025
DEFINITION  Oryza sativa Japonica Group homeobox-leucine zipper protein
            ROC2-like (LOC4337074), transcript variant 2, mRNA.
ACCESSION   NM_001402433 XM_015780853
VERSION     NM_001402433.1
KEYWORDS    RefSeq.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3400)
  AUTHORS   Jantasuriyarat,C., Gowda,M., Haller,K., Hatfield,J., Lu,G.,
            Stahlberg,E., Zhou,B., Li,H., Kim,H., Yu,Y., Dean,R.A., Wing,R.A.,
            Soderlund,C. and Wang,G.L.
  TITLE     Large-scale identification of expressed sequence tags involved in
            rice and rice blast fungus interaction
  JOURNAL   Plant Physiol 138 (1), 105-115 (2005)
   PUBMED   15888683
REFERENCE   2  (bases 1 to 3400)
  AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
            Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
            Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
            Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
            Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
            Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
            Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
            Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
            Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
            Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
            Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
            and Yasunishi,A.
  CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team;
            Foundation of Advancement of International Science Genome
            Sequencing & Analysis Group; RIKEN
  TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
            japonica rice
  JOURNAL   Science 301 (5631), 376-379 (2003)
   PUBMED   12869764
  REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CI639617.1, AB101645.1, CB683722.1, AK065819.1 and CI036511.1.
            
            On Mar 14, 2022 this sequence version replaced XM_015780853.2.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMN07124408, SAMN37494760
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-247               CI639617.1         3-249
            248-1257            AB101645.1         57-1066
            1258-1758           CB683722.1         136-636
            1759-1954           AB101645.1         1568-1763
            1955-3010           AK065819.1         1061-2116
            3011-3400           CI036511.1         134-523
FEATURES             Location/Qualifiers
     source          1..3400
                     /organism="Oryza sativa Japonica Group"
                     /mol_type="mRNA"
                     /db_xref="taxon:39947"
                     /chromosome="4"
                     /map="4"
     gene            1..3400
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="homeobox-leucine zipper protein ROC2-like"
                     /db_xref="GeneID:4337074"
     exon            1..206
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            207..534
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    424..426
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="upstream in-frame stop codon"
     CDS             448..2802
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="isoform 1 is encoded by transcript variant 2;
                     GLABRA 2-like homeobox protein 2; HD-ZIP protein ROC2;
                     Homeodomain transcription factor ROC2; LOC_Os04g53540;
                     OSJNBb0060E08.16; Protein RICE OUTERMOST CELL-SPECIFIC 2;
                     GL2-type homeodomain protein; homeobox-leucine zipper
                     protein ROC2"
                     /codon_start=1
                     /product="homeobox-leucine zipper protein ROC2 isoform 1"
                     /protein_id="NP_001389362.1"
                     /db_xref="GeneID:4337074"
                     /translation="

MMIPARHMPSMIGRNGAAYGSSSALSLSQPNLLDNHQFQQAFQHQQQQHHLLDQIPATTAESGDNMIRSRASDPLGGDEFESKSGSENVDGVSVDDQDPNQRPRKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKNQHERHENSQLRSDNEKLRAENMRYKEALSSASCPNCGGPAALGEMSFDEHHLRIENARLREEIDRISAIAAKYVGKPMVPFPVLSNPMAAAASRAPLDLPVAPYGVPGDMFGGGGAGELLRGVQSEVDKPMIVELAVAAMEELVRMAQLDEPLWSVAPPLDATAAAMETLSEEEYARMFPRGLGPKQYGLRSEASRDSAVVIMTHANLVEILMDANQYAAVFSNIVSRAITLEVLSTGVAGNYNGALQVMSVEFQVPSPLVPTRESYFVRYCKQNADGTWAVVDVSLDSLRPSPVLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHNIYKLLVNSGLAFGARRWVGTLDRQCERLASVMASNIPTSDIGVITSSEGRKSMLKLAERMVVSFCGGVTASVAHQWTTLSGSGAEDVRVMTRKSVDDPGRPPGIVLNAATSFWLPVPPKRVFDFLRDESSRSEWDILSNGGIVQEMAHIANGRDQGNCVSLLRVNSSNSNQSNMLILQESCTDASGSYVIYAPVDVVAMNVVLNGGDPDYVALLPSGFAILPDGPAHDGGDGDGGVGVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIACTVERIKAAVSGESNPQ"

     misc_feature    625..786
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="propagated from UniProtKB/Swiss-Prot (Q0J9X2.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    760..930
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="Region: Homeodomain; pfam00046"
                     /db_xref="CDD:459649"
     misc_feature    <904..1020
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="Cell division protein ZapB, interacts with FtsZ
                     [Cell cycle control, cell division, chromosome
                     partitioning]; Region: ZapB; COG3074"
                     /db_xref="CDD:442308"
     misc_feature    1315..2004
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="C-terminal lipid-binding START domain of the
                     Arabidopsis homeobox protein GLABRA 2 and related
                     proteins; Region: START_ArGLABRA2_like; cd08875"
                     /db_xref="CDD:176884"
     misc_feature    order(1399..1404,1450..1452,1513..1515,1519..1521,
                     1552..1554,1564..1566,1576..1578,1585..1590,1603..1608,
                     1687..1689,1693..1704,1711..1713,1720..1722,1726..1728,
                     1732..1734,1780..1782,1822..1824,1828..1839,1843..1845,
                     1879..1881,1885..1887,1891..1893,1897..1899,1903..1905,
                     1909..1911,1927..1929,1933..1941,1945..1953,1960..1965,
                     1972..1974)
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /note="putative lipid binding site [chemical binding];
                     other site"
                     /db_xref="CDD:176884"
     exon            535..809
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            810..927
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1116
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1117..1575
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1576..1677
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1878
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2053
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2054..2325
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2326..2421
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2422..2848
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
     exon            2849..3395
                     /gene="LOC4337074"
                     /gene_synonym="GL2-2; Roc2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gcggcaataactccttcgcccccctctccacattctcttccacctgtgttccccttttcttctcctcttcttcttcctctcctcctcctgatcctgatcgagaagatctcaccttgatctcttgccgtgtgatctctagctctcgctagccctctgaaccttgcagtttgttgtttgcacccggtgaaacatcttcttttgtgcagcaaggttcgttgggctagcttgtgtgctagatctgtttctacttgcgtttgcgttgcttggcaagcaagatatatatatatatatctatatctatctatctatcattctatctccctacatatttagagctagcactttgtgtgttctttgggtttgggacacactcatatacgcgtgttcatgagtggaaatggaaggagctgcaagggcaagaattagggtttgagatataggagtataatgatgatcccggcgaggcatatgccgtcgatgatcggccggaacggcgcagcgtacggatcctcatcggcactgtcactcagccagccaaacttgctggataatcaccagttccagcaagcgttccagcatcagcagcagcagcatcatctccttgaccagatcccggcgacgacggcggagagcggcgacaacatgatccgcagccgtgcgtccgaccctctcggcggcgacgagttcgagagcaagtccggcagcgagaacgtcgacggcgtctccgtcgacgaccaggaccccaaccagcggccgcgcaagaagcgctaccaccgccacacccagcatcagatccaggagatggaagcattcttcaaggaatgtccacacccagatgataagcagcgcaaggagctgagccgggagctcggcctggagcctctccaagtgaagttctggttccagaacaagcgcacccaaatgaagaaccagcatgagaggcacgagaactcgcagctgcggtcggataacgagaagctccgggccgagaacatgcggtacaaggaggccctgagcagcgcctcctgccccaactgcggcggccccgccgccctcggcgagatgtccttcgacgagcaccacctccgcatcgagaacgcccgcctccgcgaagagatcgataggatatcggcgatcgcggcgaagtacgtggggaagccaatggtgccgttcccggtgctgtcgaacccgatggcggcggcggcgtcgcgggcgccgctggacctccccgtggcgccgtacggcgtgccgggcgacatgttcggcggcggtggcgccggggagctgctgcgcggggtgcagtcggaggtcgacaagccgatgatcgtggagctcgccgtggcggcgatggaggagctggtccgcatggcgcagctggacgagccgctctggagcgtcgcgccgccgctcgacgccacggcggcggcgatggagacgctcagcgaggaggagtacgcgcgcatgttcccccgagggctcggccccaagcagtacgggctcaggtcggaggcgtcccgcgacagcgccgtcgtcatcatgacgcacgccaacctcgtcgagatcctcatggacgcgaatcagtacgcggcagtgttctcgaacatcgtgtcgagggccatcacgctggaggtgctgtccaccggcgtcgcggggaactacaacggtgcattgcaagtgatgtcagtggagtttcaggtgccatcgccactggtgccaacgagagagagctacttcgtgagatactgcaagcagaacgcagacgggacatgggccgtcgtcgacgtctcgctggacagcctccgccctagccccgtcctcaaatgtcgccgccgtccgtcaggctgcctcatccaagaaatgcccaatggctactccaaggtgacgtgggtggagcatgtggaggtggacgacaggtcggtgcacaacatctacaagctgctggtgaactccgggctggcgttcggcgcgcggcggtgggtcggcacgctggaccgccagtgcgagcgcctcgccagcgtcatggccagcaacatccccaccagcgacatcggcgtgattacgagctcggaggggaggaagagcatgctgaagctggcggagaggatggtggtgagcttctgcggcggcgtgacggcgtcggtggcgcatcagtggacgacgctgtccggcagcggcgccgaggacgtccgcgtcatgacgaggaagagcgtcgacgaccccgggaggccccccggcatcgtcctcaacgccgccacctccttctggctccccgtccctcccaagcgcgtcttcgacttcctccgcgacgaatcctctcgcagtgagtgggacatcctctccaatggcggtatcgttcaagaaatggcccacatcgccaatggccgggatcagggcaactgcgtctcacttcttcgcgtcaacagctcgaactcgaaccagagcaacatgctgatcctgcaggagagctgcacggacgcgtcggggtcgtacgtcatctacgcgccggtggacgtggttgcgatgaacgtcgtgctaaacggcggcgacccggactacgtcgcgctgctgccatcgggcttcgccatcctgcccgatgggccggcgcacgacggtggcgacggcgacggcggcgtcggcgtcggctccggcgggtcgctgctgacggtggcgttccagatactggtggactccgtcccgacggcgaagctctcgctggggtcggtggcgacggtgaacagcctcatcgcctgcacggtggagcgcatcaaggcggccgtctccggcgagagcaatccgcagtagcttcgtccttgaatcaaacaaaagcttcttgtgctttcaatttcaggagcagcaaaattttggagctttcatcagtgggaagtcaagaacgcacctcagactgtccttgccatgtggtgcccatatatagtttggattatttttcgctagtttttccgcaaattcgggaaatttcaaaaaaaatgtgtcaccactacgcaagggcggttggttcgggtattgacttcctcttcatgttcgcctctcggatgctgctaccttatgaatttagggttcttctggagtacaaaaaaaaccccttaatttgatctgtaatttctgttgttcagacttcccagtacctagctagctagtaggagttgcagaatagagatctgtgtccctgtcttatacttttagttctcttcagtgtttgatcagtgctgtttcaatccaaaattgtgtgtgctgtgcttgttattagttcttccttgctgcttcaatgaaggcgatgttaatttcagtttccagcagttgcagagttgtgtaagatgacttgcatttcattgccttcaacagtattctatcagaactgtcgcatatcccccaaaaaaaaaaa

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