2024-05-05 01:24:14, GGRNA.v2 : RefSeq release 222 (Jan, 2024)
LOCUS NM_001402185 1565 bp mRNA linear PLN 31-DEC-2022 DEFINITION Oryza sativa Japonica Group UDP-arabinopyranose mutase 1-like (LOC4333393), mRNA. ACCESSION NM_001402185 XM_015775840 VERSION NM_001402185.1 KEYWORDS RefSeq. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1565) AUTHORS Jantasuriyarat C, Gowda M, Haller K, Hatfield J, Lu G, Stahlberg E, Zhou B, Li H, Kim H, Yu Y, Dean RA, Wing RA, Soderlund C and Wang GL. TITLE Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction JOURNAL Plant Physiol 138 (1), 105-115 (2005) PUBMED 15888683 REFERENCE 2 (bases 1 to 1565) AUTHORS Kikuchi S, Satoh K, Nagata T, Kawagashira N, Doi K, Kishimoto N, Yazaki J, Ishikawa M, Yamada H, Ooka H, Hotta I, Kojima K, Namiki T, Ohneda E, Yahagi W, Suzuki K, Li CJ, Ohtsuki K, Shishiki T, Otomo Y, Murakami K, Iida Y, Sugano S, Fujimura T, Suzuki Y, Tsunoda Y, Kurosaki T, Kodama T, Masuda H, Kobayashi M, Xie Q, Lu M, Narikawa R, Sugiyama A, Mizuno K, Yokomizo S, Niikura J, Ikeda R, Ishibiki J, Kawamata M, Yoshimura A, Miura J, Kusumegi T, Oka M, Ryu R, Ueda M, Matsubara K, Kawai J, Carninci P, Adachi J, Aizawa K, Arakawa T, Fukuda S, Hara A, Hashizume W, Hayatsu N, Imotani K, Ishii Y, Itoh M, Kagawa I, Kondo S, Konno H, Miyazaki A, Osato N, Ota Y, Saito R, Sasaki D, Sato K, Shibata K, Shinagawa A, Shiraki T, Yoshino M, Hayashizaki Y and Yasunishi A. CONSRTM Rice Full-Length cDNA Consortium; National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team; Foundation of Advancement of International Science Genome Sequencing & Analysis Group; RIKEN TITLE Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice JOURNAL Science 301 (5631), 376-379 (2003) PUBMED 12869764 REMARK Erratum:[Science. 2003 Sep;301(5641):1849] COMMENT VALIDATED REFSEQ: This record has undergone validation or preliminary review. The reference sequence was derived from CI745105.1, CB658922.1, CB663397.1 and AU097119.1. On Mar 8, 2022 this sequence version replaced XM_015775840.2. ##Evidence-Data-START## Transcript exon combination :: AK061813.1, AK098933.1 [ECO:0000332] RNAseq introns :: single sample supports all introns SAMD00008650, SAMD00020310 [ECO:0000348] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-376 CI745105.1 2-377 377-628 CB658922.1 351-602 629-1253 CB663397.1 160-784 c 1254-1565 AU097119.1 147-458 FEATURES Location/Qualifiers source 1..1565 /organism="Oryza sativa Japonica Group" /mol_type="mRNA" /db_xref="taxon:39947" /chromosome="3" /map="3" gene 1..1565 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="UDP-arabinopyranose mutase 1-like" /db_xref="GeneID:4333393" exon 1..440 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /inference="alignment:Splign:2.1.0" CDS 99..1193 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /EC_number="5.4.99.30" /note="alpha-1,4-glucan protein synthase; LOC_Os03g40270; Reversibly glycosylated polypeptide 1; UDP-L-arabinose mutase 1" /codon_start=1 /product="uDP-arabinopyranose mutase 1" /protein_id="NP_001389114.1" /db_xref="GeneID:4333393" /translation="
MAGTVTVPSASVPSTPLLKDELDIVIPTIRNLDFLEMWRPFFQPYHLIIVQDGDPTKTIRVPEGFDYELYNRNDINRILGPKASCISFKDSACRCFGYMVSKKKYVFTIDDDCFVAKDPSGKDINALEQHIKNLLSPSTPFFFNTLYDPYREGADFVRGYPFSLREGAKTAVSHGLWLNIPDYDAPTQMVKPRERNSRYVDAVMTVPKGTLFPMCGMNLAFDRDLIGPAMYFGLMGDGQPIGRYDDMWAGWCMKVICDHLSLGVKTGLPYIWHSKASNPFVNLKKEYKGIFWQEDIIPFFQNATIPKECDTVQKCYLSLAEQVREKLGKIDPYFVKLADAMVTWIEAWDELNPSTAAVENGKAK"
misc_feature 126..1163 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="reversibly glycosylated polypeptide; Provisional; Region: PLN03180" /db_xref="CDD:215615" misc_feature 426..434 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="propagated from UniProtKB/Swiss-Prot (Q8H8T0.1); Region: DXD motif. /evidence=ECO:0000269|PubMed:20149347" misc_feature 570..572 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="N-linked (Glc...) arginine. /evidence=ECO:0000269|PubMed:20149347; propagated from UniProtKB/Swiss-Prot (Q8H8T0.1); glycosylation site" misc_feature 570..572 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="Required for activity. /evidence=ECO:0000269|PubMed:20149347; propagated from UniProtKB/Swiss-Prot (Q8H8T0.1); other site" misc_feature 591..593 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /note="Required for activity. /evidence=ECO:0000269|PubMed:20149347; propagated from UniProtKB/Swiss-Prot (Q8H8T0.1); other site" exon 441..691 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /inference="alignment:Splign:2.1.0" exon 692..860 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /inference="alignment:Splign:2.1.0" exon 861..1552 /gene="LOC4333393" /gene_synonym="OJ1523_A02.1; OsJ_11657; OsUAM1; RGP1; UAM1" /inference="alignment:Splign:2.1.0" ORIGIN
aaacccacacacacctcacacctcaccaccatcacctcctcctcctcctcctcttcctccgcgcgcgcgagatccagggagagggagagggagagatcatggcggggacggtgacggtgccgtcggcgtcggtgccgtcgacgccgctgctcaaggacgagctggacatcgtgatcccgacgatccgcaacctggacttcctggagatgtggcggcccttcttccagccctaccacctcatcatcgtgcaggacggcgacccgaccaagaccatccgcgtccccgagggcttcgactacgagctctacaaccgcaacgacatcaaccggatcctcggccccaaggcctcctgcatctccttcaaggactccgcatgccgctgcttcggctacatggtctccaagaagaagtacgtcttcaccatcgacgacgactgcttcgttgccaaggacccatctggcaaggacatcaatgctcttgagcagcacatcaagaacctcctcagcccgtccaccccgttcttcttcaacaccttgtatgatccctaccgcgaaggcgctgactttgtccgtggttaccccttcagcctcagggagggagccaagactgctgtctctcacggcctgtggcttaacatccctgactatgatgctcctactcagatggtcaagcctcgtgagaggaactccaggtatgttgatgctgtcatgactgtgcccaagggaaccttgttccccatgtgtggcatgaaccttgcttttgaccgtgatctcatcggtcctgcaatgtactttggtctcatgggtgatggccagcctattggtcgctacgacgacatgtgggctggatggtgcatgaaggtcatctgtgaccacctgagcctgggagtgaagactggactgccgtacatctggcacagcaaggctagcaaccccttcgtgaacttgaagaaggaatacaagggcatcttctggcaggaggacatcatccccttcttccagaacgccaccatccccaaggagtgcgacaccgtccagaagtgctacctctccctcgccgagcaggtcagggagaagctcggcaagatcgacccctacttcgtcaagcttgccgatgccatggtcacctggatcgaggcctgggatgagctgaacccctcgactgctgctgtcgagaacggcaaggccaagtagattgatcctgggagcttgtgtgtcgcaggatggaaagtaccctttaagtgaaagtgttgctgtggcctaggccccctagatatagctctttttgagatgaagggagagattacttaagcaactttataattctttgttgttatgctggttcttttgtagctggaaaaggatttgttatcatcgtttacataattcaagacaataataattttatcatgtaattttgatagtcgtgctttggttgctaaatggtgttattgtatttaataacctttgcaaatcactatacctgttggttgttctgagaattgtatgcactaccatattatatttctaaatcatttcgtaggcattatggaaaaaaaaaaaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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