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Previous release (v1)
2025-01-31 02:39:55, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS NM_199240 5701 bp mRNA linear ROD 29-OCT-2024
DEFINITION Mus musculus sema domain, transmembrane domain (TM), and
cytoplasmic domain, (semaphorin) 6D (Sema6d), transcript variant 6,
mRNA.
ACCESSION NM_199240
VERSION NM_199240.4
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 5701)
AUTHORS Thowfeequ,S., Fiorentino,J., Hu,D., Solovey,M., Ruane,S.,
Whitehead,M., Zhou,F., Godwin,J., Mateo-Otero,Y.,
Vanhaesebroeck,B., Scialdone,A. and Srinivas,S.
TITLE An integrated approach identifies the molecular underpinnings of
murine anterior visceral endoderm migration
JOURNAL Dev Cell 59 (17), 2347-2363 (2024)
PUBMED 38843837
REFERENCE 2 (bases 1 to 5701)
AUTHORS Nakanishi,Y., Izumi,M., Matsushita,H., Koyama,Y., Diez,D.,
Takamatsu,H., Koyama,S., Nishide,M., Naito,M., Mizuno,Y.,
Yamaguchi,Y., Mae,T., Noda,Y., Nakaya,K., Nojima,S., Sugihara,F.,
Okuzaki,D., Ikawa,M., Shimada,S., Kang,S. and Kumanogoh,A.
TITLE Semaphorin 6D tunes amygdalar circuits for emotional, metabolic,
and inflammatory outputs
JOURNAL Neuron 112 (17), 2955-2972 (2024)
PUBMED 39002542
REMARK GeneRIF: Semaphorin 6D tunes amygdalar circuits for emotional,
metabolic, and inflammatory outputs.
REFERENCE 3 (bases 1 to 5701)
AUTHORS Hirai,T., Naito,Y., Koyama,S., Nakanishi,Y., Masuhiro,K., Izumi,M.,
Kuge,T., Naito,M., Mizuno,Y., Yamaguchi,Y., Kang,S., Yaga,M.,
Futami,Y., Nojima,S., Nishide,M., Morita,T., Kato,Y., Tsuda,T.,
Takemoto,N., Kinugasa-Katayama,Y., Aoshi,T., Villa,J.K.,
Yamashita,K., Enokida,T., Hoshi,Y., Matsuura,K., Tahara,M.,
Takamatsu,H., Takeda,Y., Inohara,H. and Kumanogoh,A.
TITLE Sema6D forward signaling impairs T cell activation and
proliferation in head and neck cancer
JOURNAL JCI Insight 9 (3), e166349 (2024)
PUBMED 38329122
REMARK GeneRIF: Sema6D forward signaling impairs T cell activation and
proliferation in head and neck cancer.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 5701)
AUTHORS Prieur,D.S., Francius,C., Gaspar,P., Mason,C.A. and Rebsam,A.
TITLE Semaphorin-6D and Plexin-A1 Act in a Non-Cell-Autonomous Manner to
Position and Target Retinal Ganglion Cell Axons
JOURNAL J Neurosci 43 (32), 5769-5778 (2023)
PUBMED 37344233
REMARK GeneRIF: Semaphorin-6D and Plexin-A1 Act in a Non-Cell-Autonomous
Manner to Position and Target Retinal Ganglion Cell Axons.
REFERENCE 5 (bases 1 to 5701)
AUTHORS Sun,T., Zeng,H., Fan,L., Fei,J. and Chen,G.
TITLE Semaphorin 6D regulate corralling, hematoma compaction and white
matter injury in mice after intracerebral hemorrhage
JOURNAL J Stroke Cerebrovasc Dis 31 (11), 106803 (2022)
PUBMED 36174325
REMARK GeneRIF: Semaphorin 6D regulate corralling, hematoma compaction and
white matter injury in mice after intracerebral hemorrhage.
REFERENCE 6 (bases 1 to 5701)
AUTHORS Chen,B., Schaevitz,L.R. and McConnell,S.K.
TITLE Fezl regulates the differentiation and axon targeting of layer 5
subcortical projection neurons in cerebral cortex
JOURNAL Proc Natl Acad Sci U S A 102 (47), 17184-17189 (2005)
PUBMED 16284245
REFERENCE 7 (bases 1 to 5701)
AUTHORS Toyofuku,T., Zhang,H., Kumanogoh,A., Takegahara,N., Yabuki,M.,
Harada,K., Hori,M. and Kikutani,H.
TITLE Guidance of myocardial patterning in cardiac development by Sema6D
reverse signalling
JOURNAL Nat Cell Biol 6 (12), 1204-1211 (2004)
PUBMED 15543137
REMARK GeneRIF: Sema6D coordinates both compact-layer expansion and
trabeculation, functioning as both a ligand and a receptor for
Plexin-A1.
REFERENCE 8 (bases 1 to 5701)
AUTHORS Toyofuku,T., Zhang,H., Kumanogoh,A., Takegahara,N., Suto,F.,
Kamei,J., Aoki,K., Yabuki,M., Hori,M., Fujisawa,H. and Kikutani,H.
TITLE Dual roles of Sema6D in cardiac morphogenesis through
region-specific association of its receptor, Plexin-A1, with
off-track and vascular endothelial growth factor receptor type 2
JOURNAL Genes Dev 18 (4), 435-447 (2004)
PUBMED 14977921
REMARK GeneRIF: Plexin-S1, with Sema6D, exerts distinct biological
activities at adjacent regions, crucial for complex cardiac
morphogenesis.
REFERENCE 9 (bases 1 to 5701)
AUTHORS Taniguchi,M. and Shimizu,T.
TITLE Characterization of a novel member of murine semaphorin family
JOURNAL Biochem Biophys Res Commun 314 (1), 242-248 (2004)
PUBMED 14715272
REFERENCE 10 (bases 1 to 5701)
AUTHORS Qu,X., Wei,H., Zhai,Y., Que,H., Chen,Q., Tang,F., Wu,Y., Xing,G.,
Zhu,Y., Liu,S., Fan,M. and He,F.
TITLE Identification, characterization, and functional study of the two
novel human members of the semaphorin gene family
JOURNAL J Biol Chem 277 (38), 35574-35585 (2002)
PUBMED 12110693
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL935323.6.
On May 27, 2022 this sequence version replaced NM_199240.3.
Transcript Variant: This variant (6) uses an alternate in-frame
splice site and contains an additional in-frame exon in the central
coding region, compared to variant 1. The encoded isoform
(Sema6D-6) is longer than isoform Sema6D-1. The 5' UTR is
incomplete because the evidence for this variant is for the CDS
only, and multiple possible 5' UTR exon combinations exist.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AB091535.1, SRR10223970.4400.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849374, SAMN00849375
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-163 AL935323.6 40229-40391
164-275 AL935323.6 40795-40906
276-336 AL935323.6 41444-41504
337-399 AL935323.6 41626-41688
400-501 AL935323.6 41801-41902
502-592 AL935323.6 42134-42224
593-712 AL935323.6 42658-42777
713-801 AL935323.6 43478-43566
802-1019 AL935323.6 44292-44509
1020-1151 AL935323.6 44619-44750
1152-1307 AL935323.6 45058-45213
1308-1481 AL935323.6 45294-45467
1482-1622 AL935323.6 46216-46356
1623-1700 AL935323.6 46455-46532
1701-1762 AL935323.6 46931-46992
1763-1930 AL935323.6 48852-49019
1931-5701 AL935323.6 50669-54439
FEATURES Location/Qualifiers
source 1..5701
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="2"
/map="2 60.69 cM"
gene 1..5701
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="sema domain, transmembrane domain (TM), and
cytoplasmic domain, (semaphorin) 6D"
/db_xref="GeneID:214968"
/db_xref="MGI:MGI:2387661"
exon 1..163
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
misc_feature 19..21
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="upstream in-frame stop codon"
CDS 55..3219
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="isoform Sema6D-6 precursor is encoded by transcript
variant 6; semaphorin-6D"
/codon_start=1
/product="semaphorin-6D isoform Sema6D-6 precursor"
/protein_id="NP_954710.1"
/db_xref="CCDS:CCDS16672.1"
/db_xref="GeneID:214968"
/db_xref="MGI:MGI:2387661"
/translation="
MGFLLLWFCVLFLLVSRLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEIPQTEVIPSKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLRTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTLAFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAIEVDRSAGPYQNYTVIFVGSEAGVVLKVLAKTSPFSLNDSVLLEEIEAYNPAKCSAESEEDRKVVSLQLDKDHHALYVAFSSCVVRIPLSRCERYGSCKKSCIASRDPYCGWLSQGVCERVTLGMLPGGYEQDTEYGNTAHLGDCHDMEVSSSSVTTVASSPEITSKVIDTWRPKLTSSRKFVVQDDPNTSDFTDTISGIPKGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNTDTKSMAVDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHSHGASRKEHPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQSMDHPLTKSSSKREHRRSVDSRNTLNDLLKHLNDPNSNPKAILGEIHMAHQTLMLDPVGPMAEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISAVPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTTSVRPLNKYTY"
sig_peptide 55..114
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="COORDINATES: ab initio prediction:SignalP:6.0"
misc_feature 199..1593
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="The Sema domain, a protein interacting module, of
semaphorins and plexins; Region: Sema; cl15693"
/db_xref="CDD:472829"
misc_feature 205..207
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 901..903
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1357..1359
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1435..1437
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1594..1761
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Plexin repeat; Region: PSI; pfam01437"
/db_xref="CDD:396154"
misc_feature 1888..1890
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1984..2046
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
transmembrane region"
misc_feature 2164..2166
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2197..2199
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2227..2229
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2230..2472
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2314..2316
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphothreonine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2512..2625
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature <2722..3165
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
misc_feature 2752..2955
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2788..2790
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2866..2868
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2944..2946
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 3058..3216
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 164..275
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 276..336
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 337..399
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 400..501
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 502..592
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 593..712
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 713..801
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 802..1019
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1020..1151
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1152..1307
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1308..1481
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1482..1622
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1623..1700
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1701..1762
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1763..1930
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1931..5701
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
regulatory 5660..5665
/regulatory_class="polyA_signal_sequence"
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="hexamer: AATAAA"
regulatory 5677..5682
/regulatory_class="polyA_signal_sequence"
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="hexamer: ATTACA"
polyA_site 5680
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="major polyA site"
polyA_site 5701
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
ORIGIN
gtagctaagtgggacttctgaggagggggagctcagatttcttcttggccaaccatggggttccttctgctttggttctgcgtgctgttccttctggtctccaggttacgggcggtcagcttcccagaagacgatgagcccctcaacacggttgactatcactattcaaggcaatatccggtttttagaggacgcccttcaggcaacgaatcgcagcacaggctggactttcagctgatgttgaaaattcgagacacactttatattgctggcagggatcaagtctatacagtgaacttaaatgaaatcccccaaacagaggtgataccaagcaagaagctgacgtggaggtccagacagcaggatcgagaaaattgtgctatgaaaggcaagcataaagatgaatgccacaacttcatcaaagtctttgtcccaagaaatgatgagatggtttttgtctgtggtaccaatgctttcaacccgatgtgcagatactataggttgagaacgttagagtatgatggggaagaaattagtggcctggcacgatgcccgtttgatgcccgacaaaccaatgtcgccctctttgctgatggaaaactctattctgccacagtggctgatttcctggccagtgatgctgtcatttacagaagcatgggagatggatctgcccttcgcacaataaaatacgattccaagtggatcaaagaaccacacttccttcatgccatagaatatggaaactatgtctatttcttcttcagagaaatcgccgtggaacataataacttaggcaaggctgtgtattcccgcgtggctcgcatttgtaaaaacgacatgggtggctcacagcgggtcctggagaaacactggacttccttccttaaggctcggctgaactgctccgttcctggagattcctttttctacttcgacgtcctgcagtctataacagacataatccaaatcaatggcatccccactgtggttggggtcttcaccacacagctcaacagcattcctggttctgcagtctgtgcctttagcatggacgacattgagaaagtgttcaaagggcggttcaaagagcagaaaaccccagactctgtttggacagcagttcccgaagacaaagtaccaaaaccaaggcctggctgttgtgccaaacacggcctcgcagaagcttacaagacctccatcgactttccagatgacaccctggctttcatcaagtcccacccgctgatggactctgccgtcccacccattgccgatgagccctggttcacaaagacacgggtcaggtacaggttgacagccatcgaagtggaccgttcagcagggccataccaaaactacacagtcatctttgttggctctgaagctggcgtggtacttaaagttttggcaaagaccagtcctttctctctgaatgacagtgtattactcgaagagattgaagcttataacccagccaagtgcagcgccgagagtgaggaggacagaaaggtggtctcattacagctggacaaggatcaccatgctttatacgtggccttctctagctgcgtggtccgcatccccctcagccgctgtgagcgctacggatcgtgtaaaaagtcttgcattgcatcacgtgacccgtactgtggttggttaagccagggagtttgtgagagagtgaccctagggatgctccctggaggatatgagcaggacacggagtacggcaacacagcccacctaggggactgccacgacatggaggtatcctcatcttctgttaccactgtggcaagtagcccagaaattacatctaaagtgattgatacctggagacctaaactgacgagctcccggaaatttgtagttcaagatgacccaaatacttctgattttactgatactatatcaggtatcccaaagggtgtacggtgggaagtccagtctggagaatccaatcagatggtccacatgaatgtcctcatcacctgcgtgtttgccgcttttgtcttgggcgcgttcatcgcaggagtggccgtgtactgctaccgtgacatgttcgttcggaagaacagaaagatccataaagacgcagaatccgcccagtcgtgcacagactccagcggaagcttcgccaagctgaacggcctctttgacagccccgtcaaggaataccagcagaacattgattctcccaaactctacagcaacctgctgaccagtcggaaggaactgccaccaaacacggatacaaagtccatggccgtggaccacagaggccagcctcccgagctggctgctctccccacgccggaatccacacctgtcctccaccagaagaccctgcaggccatgaagagccactctgagaaggcccacagccacggtgcttcaaggaaagaacacccccagttttttccttctagtcctccaccccattccccattgagtcacgggcatatccccagtgccatcgttcttccaaacgccactcacgactacaatacatccttctccaactcgaatgcccacaaagccgaaaagaagcttcagagcatggatcaccctcttacgaagtcatccagtaagcgggagcaccggcggtctgtggattccaggaatactctcaatgatctcctgaagcatctaaatgacccaaacagtaaccccaaagccatcctgggagagatccatatggctcatcaaaccctcatgctggacccggtgggaccaatggctgaggtcccacccaaggtccctaaccgggaggcatctctatactcccctccctccacactccccagaaatagtccaaccaagagagtagatgtccccaccactcctggggtgccaatgacttctctggaaagacaaaggggttatcacaaaaattcctcccagaggcactctatatctgccgtgcctaaaaacttaaactcaccaaatggtgttttgttatctagacagccgagtatgaaccgtggaggctatatgcccaccccaacaggggcgaaggtggactatattcaggggacaccggtgagtgttcatctgcagccctccctctccagacagagcagctataccagtaatggcaccctccccaggacgggactaaagaggacaccatccttaaaacctgatgtgccaccaaagccttcctttgttccgcaaaccacatctgtcagaccactgaacaagtacacgtactaggcctcaagtatgctattcccgtgtggctttatcctgtccctgctgttgcgaggaagctgtgagggtaccttcagatgagatacctgcttgtattttaagagaaacaagtagccaaagaaactctgtcactttggtaacaccagaacttgccacatgtagctactacagcaaggcttctgtgtacttgccggaaacgaagggaggtcctgctcactccatttctttcgtttgaagcagaagggatgtgtagccagggaaggctcccttcaccagtgtaaagagctgatacagtactcagaagactgaacaaatacttgaaaatgggttcaatgtagactgccattctgtgtggtcttcccattaaatgtgaacattttaatatgtatgcattcaccttgcctcttgcacaaatgtcaaaatggaaagatgggaatgtctcaaaacaaaatgagcttggagattaccaagcagtttgctgaaaattcaatctttgacccaaactgtagcaatttttattttctgagtgtggcactgttttgttttatttttttgttttgttttgtttttcaatgccaccaacaaactatgttaagagaggggcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagatctacccattagaattgatttaggtgcccattgcatcttttgtactatggagttgtttacagtaagcatgactgaacaagcactaacatcctcctacaccggtccatcgtgttcggctctgatcaggaatagacaaggcttctttgactgtcaagtgattaacatatggtacccggtgtcagaacatttaagcgttctaaataattttgtgctgctatccatcagaacgtctattccagccttgccagcttaagaacttagagaaattaagaggtatctttgatgtatctaccagtattcaatagtaacatttacctgtccactgtgaatcaaagcctggggcacgctactcaaccttagacacacttacaggcttttattttgattgtgttattttattttccatacagtaaaaaatgtcctctcttaactcctctcacccccaactcccaaggcaaaagagaaaccaaaagtaggacaaaagaaagagacagacagacagacagacagaacaggaattacagttggcttagcagggaggatctgtagagctctcgatgatccttcctccatgtgtgtcctgtgaggattttgctcatgagtcatgcaggcagtgacagtgaactgtaaataccacatgtgagtttacctggatctgtgcattttgtgccttattcactcgagtggtagaagttccgcggtatgttgagtgtttccactacagagcatcatttcccatgtgccacttgtaaatgttttgcagccagcacctgaggacttcttatacagtcataaagccacctagagcgatttgttgttgagcaacgccgccccttccctccaggatcagaagcagcacccacccttgccatgataaacattccatcccctgctgttctgataatgtgaagtcagatgagggttcccaggttatgtggcacctgcggaaaccatgtctagagtcgtttctatgtagcttggcagagcccactgatggctgcaggtgtgtagcctactgacagctttggttaacccactgcacatcacccagtcatttacccaacttactctagaaatgtccacagctaaggaaggctcctgagccagtcaggcggagttcaagtgatatcttgggacagtgaccatggtctgcattacttgggggaggatggggtacaagacaccagatcatttttatacaggatgtagagtactgatgcggttgatcttttccttcaagaacattcttttctatagaaaaatgattccctgtgatcttctggaagctccaaagctgaaacccttcagctttgcaactaaaaatattacagtttaataatcaattaaaccaaccaacaataagcactacacatctgccaccaacaatgttgtttgcatttaccttaccaatattaatcccagcgtggtaactctgtgtgaccccgataacattttgtaacattgtgctgccttagagtttgtactgtgagttctatcagtatttatgttgaaatttctaacatggattctagtctctattctgttaatttaattttaaatgctttatccatttgtgcaaaggtaaacacagattgtatcttttttaatggtacggcataaaaaaataaccctaaagtgaagtggctctatactgttttatagagtactttaacgtgtatagatatcttgtaaacttgtattgtggatgtgtaaataatatgtactttgggtttttaacaccgcatgtaaagtcaaaataaaatatccaagtcattacatcctgccttttgatgttaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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