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Previous release (v1)
2025-04-20 10:46:10, GGRNA.v2 : RefSeq release 229 (Mar, 2025)
LOCUS NM_133953 4299 bp mRNA linear ROD 30-APR-2024
DEFINITION Mus musculus splicing factor 3b, subunit 3 (Sf3b3), mRNA.
ACCESSION NM_133953 NM_027443
VERSION NM_133953.2
KEYWORDS RefSeq; RefSeq Select.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 4299)
AUTHORS Adams,D.J., Barlas,B., McIntyre,R.E., Salguero,I., van der
Weyden,L., Barros,A., Vicente,J.R., Karimpour,N., Haider,A.,
Ranzani,M., Turner,G., Thompson,N.A., Harle,V., Olvera-Leon,R.,
Robles-Espinoza,C.D., Speak,A.O., Geisler,N., Weninger,W.J.,
Geyer,S.H., Hewinson,J., Karp,N.A., Fu,B., Yang,F., Kozik,Z.,
Choudhary,J., Yu,L., van Ruiten,M.S., Rowland,B.D., Lelliott,C.J.,
Del Castillo Velasco-Herrera,M., Verstraten,R., Bruckner,L.,
Henssen,A.G., Rooimans,M.A., de Lange,J., Mohun,T.J., Arends,M.J.,
Kentistou,K.A., Coelho,P.A., Zhao,Y., Zecchini,H., Perry,J.R.B.,
Jackson,S.P. and Balmus,G.
CONSRTM Sanger Mouse Genetics Project
TITLE Genetic determinants of micronucleus formation in vivo
JOURNAL Nature 627 (8002), 130-136 (2024)
PUBMED 38355793
REFERENCE 2 (bases 1 to 4299)
AUTHORS Guidi,R., Wedeles,C., Xu,D., Kolmus,K., Headland,S.E., Teng,G.,
Guillory,J., Zeng,Y.J., Cheung,T.K., Chaudhuri,S., Modrusan,Z.,
Liang,Y., Horswell,S., Haley,B., Rutz,S., Rose,C., Franke,Y.,
Kirkpatrick,D.S., Hackney,J.A. and Wilson,M.S.
TITLE Argonaute3-SF3B3 complex controls pre-mRNA splicing to restrain
type 2 immunity
JOURNAL Cell Rep 42 (12), 113515 (2023)
PUBMED 38096048
REMARK GeneRIF: Argonaute3-SF3B3 complex controls pre-mRNA splicing to
restrain type 2 immunity.
REFERENCE 3 (bases 1 to 4299)
AUTHORS Kumar,S., Alam,S.S., Bareke,E., Beauchamp,M.C., Dong,Y., Chan,W.,
Majewski,J. and Jerome-Majewska,L.A.
TITLE Sf3b4 regulates chromatin remodeler splicing and Hox expression
JOURNAL Differentiation 131, 59-73 (2023)
PUBMED 37167859
REFERENCE 4 (bases 1 to 4299)
AUTHORS Li,J., Wang,C., Feng,G., Zhang,L., Chen,G., Sun,H., Wang,J.,
Zhang,Y., Zhou,Q. and Li,W.
TITLE Rbm14 maintains the integrity of genomic DNA during early mouse
embryogenesis via mediating alternative splicing
JOURNAL Cell Prolif 53 (1), e12724 (2020)
PUBMED 31794640
REFERENCE 5 (bases 1 to 4299)
AUTHORS Nagy,Z., Riss,A., Romier,C., le Guezennec,X., Dongre,A.R.,
Orpinell,M., Han,J., Stunnenberg,H. and Tora,L.
TITLE The human SPT20-containing SAGA complex plays a direct role in the
regulation of endoplasmic reticulum stress-induced genes
JOURNAL Mol Cell Biol 29 (6), 1649-1660 (2009)
PUBMED 19114550
REFERENCE 6 (bases 1 to 4299)
AUTHORS Zhao,Y., Lang,G., Ito,S., Bonnet,J., Metzger,E., Sawatsubashi,S.,
Suzuki,E., Le Guezennec,X., Stunnenberg,H.G., Krasnov,A.,
Georgieva,S.G., Schule,R., Takeyama,K., Kato,S., Tora,L. and
Devys,D.
TITLE A TFTC/STAGA module mediates histone H2A and H2B deubiquitination,
coactivates nuclear receptors, and counteracts heterochromatin
silencing
JOURNAL Mol Cell 29 (1), 92-101 (2008)
PUBMED 18206972
REFERENCE 7 (bases 1 to 4299)
AUTHORS McKee,A.E., Minet,E., Stern,C., Riahi,S., Stiles,C.D. and
Silver,P.A.
TITLE A genome-wide in situ hybridization map of RNA-binding proteins
reveals anatomically restricted expression in the developing mouse
brain
JOURNAL BMC Dev Biol 5, 14 (2005)
PUBMED 16033648
REMARK Publication Status: Online-Only
REFERENCE 8 (bases 1 to 4299)
AUTHORS Okazaki,N., Kikuno,R., Ohara,R., Inamoto,S., Koseki,H., Hiraoka,S.,
Saga,Y., Nagase,T., Ohara,O. and Koga,H.
TITLE Prediction of the coding sequences of mouse homologues of KIAA
gene: III. the complete nucleotide sequences of 500 mouse
KIAA-homologous cDNAs identified by screening of terminal sequences
of cDNA clones randomly sampled from size-fractionated libraries
JOURNAL DNA Res 10 (4), 167-180 (2003)
PUBMED 14621295
REFERENCE 9 (bases 1 to 4299)
AUTHORS Stryke,D., Kawamoto,M., Huang,C.C., Johns,S.J., King,L.A.,
Harper,C.A., Meng,E.C., Lee,R.E., Yee,A., L'Italien,L.,
Chuang,P.T., Young,S.G., Skarnes,W.C., Babbitt,P.C. and Ferrin,T.E.
TITLE BayGenomics: a resource of insertional mutations in mouse embryonic
stem cells
JOURNAL Nucleic Acids Res 31 (1), 278-281 (2003)
PUBMED 12520002
REFERENCE 10 (bases 1 to 4299)
AUTHORS Martinez,E., Palhan,V.B., Tjernberg,A., Lymar,E.S., Gamper,A.M.,
Kundu,T.K., Chait,B.T. and Roeder,R.G.
TITLE Human STAGA complex is a chromatin-acetylating transcription
coactivator that interacts with pre-mRNA splicing and DNA
damage-binding factors in vivo
JOURNAL Mol Cell Biol 21 (20), 6782-6795 (2001)
PUBMED 11564863
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
BY126146.1, AK128988.1 and BC042580.1.
On Nov 30, 2006 this sequence version replaced NM_133953.1.
##Evidence-Data-START##
Transcript exon combination :: AK164199.1, AK128988.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN01164143 [ECO:0000348]
##Evidence-Data-END##
##RefSeq-Attributes-START##
RefSeq Select criteria :: based on conservation, expression,
longest protein
##RefSeq-Attributes-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-10 BY126146.1 1-10
11-2206 AK128988.1 1-2196
2207-4299 BC042580.1 2134-4226
FEATURES Location/Qualifiers
source 1..4299
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="8"
/map="8 57.73 cM"
gene 1..4299
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="splicing factor 3b, subunit 3"
/db_xref="GeneID:101943"
/db_xref="MGI:MGI:1289341"
exon 1..129
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 130..266
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
misc_feature 167..169
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="upstream in-frame stop codon"
CDS 197..3850
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="SAP 130; spliceosome-associated protein 130;
pre-mRNA-splicing factor SF3b 130 kDa subunit"
/codon_start=1
/product="splicing factor 3B subunit 3"
/protein_id="NP_598714.1"
/db_xref="CCDS:CCDS22665.1"
/db_xref="GeneID:101943"
/db_xref="MGI:MGI:1289341"
/translation="
MFLYNLTLQRATGISFAIHGNFSGTKQQEIVVSRGKILELLRPDPNTGKVHTLLTVEVFGVIRSLMAFRLTGGTKDYIVVGSDSGRIVILEYQPSKNMFEKIHQETFGKSGCRRIVPGQFLAVDPKGRAVMISAIEKQKLVYILNRDAAARLTISSPLEAHKANTLVYHVVGVDVGFENPMFACLEMDYEEADNDPTGEAAANTQQTLTFYELDLGLNHVVRKYSEPLEEHGNFLITVPGGSDGPSGVLICSENYITYKNFGDQPDIRCPIPRRRNDLDDPERGMIFVCSATHKTKSMFFFLAQTEQGDIFKITLETDEDMVTEIRLKYFDTVPVAAAMCVLKTGFLFVASEFGNHYLYQIAHLGDDDEEPEFSSAMPLEEGDTFFFQPRPLKNLVLVDELDSLSPILFCQIADLANEDTPQLYVACGRGPRSSLRVLRHGLEVSEMAVSELPGNPNAVWTVRRHIEDEFDAYIIVSFVNATLVLSIGETVEEVTDSGFLGTTPTLSCSLLGDDALVQVYPDGIRHIRADKRVNEWKTPGKKTIVKCAVNQRQVVIALTGGELVYFEMDPSGQLNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSDCLQPLSMQALPAQPESLCIVEMGGTEKQDELGERGSIGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRYLGSRPVKLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEFASGFASEQCPEGIVAISTNTLRILALEKLGAVFNQVAFPLQYTPRKFVIHPESNNLIIIETDHNAYTEATKAQRKQQMAEEMVEAAGEDERELAAEMAAAFLNENLPESIFGAPKAGNGQWASVIRVMNPIQGNTLDLVQLEQNEAAFSVAVCRFSNTGEDWYVLVGVAKDLILSPRSVAGGFVYTYKLVNNGEKLEFLHKTPVEEVPAAIAPFQGRVLIGVGKLLRVYDLGKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRWVTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVIMNYHVGETVLSLQKTTLIPGGSESLVYTTLSGGIGILVPFTSHEDHDFFQHVEMHLRSEHPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFNSMEPNKQKNVSEELDRTPPEVSKKLEDIRTRYAF"
misc_feature 422..1972
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Mono-functional DNA-alkylating methyl
methanesulfonate N-term; Region: MMS1_N; pfam10433"
/db_xref="CDD:463091"
misc_feature 509..553
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with PHF5A, SF3B1 and SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 629..700
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with PHF5A, SF3B1 and SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 662..664
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); phosphorylation site"
misc_feature 773..889
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with SF3B1 and SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 1046..1048
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 1112..1114
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 1250..1252
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 1481..1483
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 2552..2608
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with SF3B1 and SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 2783..3742
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="CPSF A subunit region; Region: CPSF_A; pfam03178"
/db_xref="CDD:427182"
misc_feature 3158..3160
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B1.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 3278..3343
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with SF3B1.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 3494..3565
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="propagated from UniProtKB/Swiss-Prot (Q921M3.1);
Region: Interaction with SF3B5.
/evidence=ECO:0000250|UniProtKB:Q15393"
misc_feature 3707..3709
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Interaction with SF3B1.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); other site"
misc_feature 3794..3796
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="Phosphothreonine.
/evidence=ECO:0000250|UniProtKB:Q15393; propagated from
UniProtKB/Swiss-Prot (Q921M3.1); phosphorylation site"
exon 267..593
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 594..766
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 767..908
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 909..1021
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1022..1159
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1160..1263
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1264..1429
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1430..1525
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1526..1598
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1599..1750
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1751..1906
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 1907..2062
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2063..2206
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2207..2329
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2330..2484
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2485..2659
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2660..2865
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 2866..3022
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3023..3148
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3149..3361
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3362..3460
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3461..3604
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3605..3709
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
exon 3710..4299
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/inference="alignment:Splign:2.1.0"
regulatory 4278..4283
/regulatory_class="polyA_signal_sequence"
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="hexamer: TATAAA"
polyA_site 4299
/gene="Sf3b3"
/gene_synonym="1810061H24Rik; 5730409A01Rik; D8Ertd633e;
mKIAA0017; RSE1; SAP130; SF3b130"
/note="major polyA site"
ORIGIN
gtcgcgcggcacccgaaggcccgtcttgaaggctaatggcggacgccggcggatcggcagtggcggtggcttaggccttgaagcgattcagcatccgtcgggtaccgaagccatccttcttgcagcaggtctgctttgccttgaaaccgttgctgtaaccaagagttgactgagggtcacagctttgcttgtcaccatgtttctgtacaacctgaccttacagcgggccactggcatcagctttgccatccatggcaacttctctggaaccaagcaacaggaaattgttgtttcccgtgggaagattttggagttactacgcccagaccctaacactggcaaagtacataccctcctcactgttgaagtatttggtgttatccggtcacttatggcgtttaggctaacaggtggcaccaaagactacattgtagttggcagtgactcaggccggattgttatcttggaataccagccatcaaagaatatgtttgagaaaattcaccaagaaacttttggcaaaagcggatgtcgccgtattgttcctggccagttcttagctgtggatcccaaaggaagagctgttatgattagtgcaattgagaagcagaaattggtatatatcttgaacagagacgctgcagcccgacttaccatttcctctcccctggaggcccacaaagcgaacactctggtgtatcacgtggttggcgtagacgtgggatttgagaatcctatgtttgcttgtctggaaatggattatgaggaggcagacaatgatccaacaggggaagcagcagccaatacccagcagacacttactttctatgaactggaccttggcttaaatcatgtggttcggaaatacagtgaacccttggaggaacatggcaacttccttattacagttcctggagggtcagatggtccaagtggagtgctaatctgctctgagaattatatcacctacaagaactttggtgaccagccagacatccgatgtccaattcccaggagacggaatgacctggatgaccctgaacgaggaatgatttttgtttgctctgccacccataagaccaagtccatgttcttctttctggcccaaacggagcagggagatatctttaagatcactttagagacagatgaagatatggtaaccgagatccgcctcaagtattttgatactgtgcctgttgctgctgctatgtgtgtgcttaaaacaggcttcctttttgtggcgtcagaatttggaaatcattacttgtatcaaattgcccatctcggagatgatgatgaagaacctgagttttcgtctgccatgcctctagaagaaggagacacattcttctttcagccgagaccactcaaaaatctcgtgctggtggatgaactggacagcctctctcctattctgttttgccagatagctgatttggccaatgaagacaccccacagctgtatgtagcctgtggtaggggaccccggtcctccctgagagtcttaaggcatggacttgaggtgtcggaaatggctgtttctgagctccctggtaaccccaatgctgtctggacagtccgtcggcacattgaagatgagtttgatgcctacatcattgtgtctttcgtgaatgccacacttgtgctatctatcggagagactgtggaagaagtgactgactctggcttcttgggcaccactccaaccttgtcctgctccttgttaggagatgatgcactggtgcaggtgtatccagatggcatccgacacatacgagcagataaaagagttaatgagtggaagactcccggcaagaaaacgattgtgaagtgtgcagtgaaccagcgacaagtggtgatcgccctgactgggggagagctggtctatttcgagatggatccttcaggacagttgaatgagtacacggagcggaaagagatgtcagcagatgtggtgtgcatgagtctggccaacgtgccccctggagaacagcgatctcggttcctggctgtggggctggtggacaacactgtcagaatcatctccctcgacccatcagactgtttacagcctctgagtatgcaggctctcccagcccagcctgagtctctatgtattgtggaaatgggtgggactgagaaacaagatgagctgggtgagagaggctctattggcttcctgtacctgaacattggactacagaacggtgtactgctgaggactgtcctagaccctgttactggggacctgtctgacacccgcactaggtatctggggtcccgtcctgtgaaactcttccgggtccggatgcaaggccaggaggctgttctggctatgtccagtcgctcatggctgagctactcttaccagtctcgcttccatctcacccctctgtcttatgagaccctggaatttgcatcgggctttgcctctgaacagtgtcccgagggcattgttgccatctccaccaacactttgaggattttggctttagagaagcttggtgctgtcttcaatcaagtagccttcccattgcagtacacacccaggaagtttgtcatccaccctgagagtaacaaccttatcatcattgagacggatcacaatgcctacactgaggccacaaaagctcagagaaagcagcagatggctgaggaaatggtagaagcagcaggggaggatgagcgggagttggctgcagaaatggcagcagcattcctcaatgaaaacctcccagaatccatttttggagctcccaaggctggcaatgggcagtgggcctctgtgattcgggtgatgaaccctatccaggggaatacactagaccttgtccagttggagcaaaacgaggcagcctttagtgtggcagtgtgtaggttctccaacactggtgaagattggtatgtgctggtgggtgttgccaaggacttgatactgagccctcgatctgtggcagggggctttgtgtatacgtacaagcttgtgaacaacggggagaagttggagtttctgcacaagactccagtggaagaggtccctgctgccattgccccattccaggggagggtactgattggtgtcgggaagcttttacgagtttatgacctggggaagaagaagttacttcgaaagtgtgagaataagcatattgccaattacatatctgggatccagacaattggtcacagggtaattgtgtctgatgtccaagaaagtttcatctgggttcgatacaagcgtaacgagaaccagctcattatctttgctgatgacacctatcccagatgggtcaccacagccagccttctcgactatgacactgtggctggggcagacaagtttggcaacatttgtgtggtgaggctcccacctaacaccaacgatgaggtggatgaagatcccactggaaacaaagccctgtgggaccggggcttgctcaatggggcttcacagaaggcagaggtcatcatgaactaccacgttggagagaccgtgctgtcgctacagaagaccacactgatccctggaggctcagagtcccttgtctataccactttatctggaggaattggcatccttgtccctttcacgtctcacgaggaccatgacttcttccagcatgttgaaatgcacctgcggtctgagcatccccctctttgtggacgggaccacctgagctttcgttcttactatttccctgttaagaatgtgattgatggagacctttgtgagcagttcaactccatggaacccaacaagcagaagaacgtctctgaggagctggaccgaaccccacctgaagtgtccaagaagcttgaggacattaggacccgctatgccttctgaacccgtctttatctggggccttgccagagagcccctcttttgttcccattgccagtgtctggcttttgccacacagcagaagtgatgtggtatttaagactgcattgttaaagccagtagctctgcaccctcaactctcccctttgaatgactggttccctacagttgacactgaagtctgctccttgaacatagtgtgtggccctgagcttcggtgtggaacacagttttccttattcccaaagccacccctgcattgtgtaatttctggctcttgtctacttttgtacacattcttaattttcattgttttcctgtaaatacagttttgtacaatgttgctttgagagatgaagggaggcaagcaaaggtgcagccaggctgattgcagtgtggctcagttctgccctcggaaccctcctgaatatataaaactagtttttaaggtg
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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