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Previous release (v1)
2025-01-31 08:20:20, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS NM_001405235 5094 bp mRNA linear ROD 11-SEP-2024
DEFINITION Mus musculus histone deacetylase 5 (Hdac5), transcript variant 10,
mRNA.
ACCESSION NM_001405235 XM_036156342
VERSION NM_001405235.1
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 5094)
AUTHORS Li,N., Liu,T., Wang,Y.Y., Xu,T., Shi,H.J., Chang,L. and Zhu,L.J.
TITLE Hippocampal HDAC5-mediated histone acetylation underlies stress
susceptibility in mice exposed to chronic social defeat stress
JOURNAL Neuroscience 557, 89-99 (2024)
PUBMED 39127342
REMARK GeneRIF: Hippocampal HDAC5-mediated histone acetylation underlies
stress susceptibility in mice exposed to chronic social defeat
stress.
REFERENCE 2 (bases 1 to 5094)
AUTHORS Zhao,Y., Wang,H., Tang,Y., Wang,J., Wu,X., He,Z., He,Y. and Tang,Z.
TITLE SNHG16/miR-205/HDAC5 is involved in the progression of renal
fibrosis
JOURNAL J Biochem Mol Toxicol 38 (1), e23617 (2024)
PUBMED 38079211
REMARK GeneRIF: SNHG16/miR-205/HDAC5 is involved in the progression of
renal fibrosis.
REFERENCE 3 (bases 1 to 5094)
AUTHORS Zhu,C., Piao,Z. and Jin,L.
TITLE HDAC5 inhibition attenuates ventricular remodeling and cardiac
dysfunction
JOURNAL Orphanet J Rare Dis 18 (1), 266 (2023)
PUBMED 37667300
REMARK GeneRIF: HDAC5 inhibition attenuates ventricular remodeling and
cardiac dysfunction.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 5094)
AUTHORS Kim,S.J., Hotta-Hirashima,N., Asano,F., Kitazono,T., Iwasaki,K.,
Nakata,S., Komiya,H., Asama,N., Matsuoka,T., Fujiyama,T., Ikkyu,A.,
Kakizaki,M., Kanno,S., Choi,J., Kumar,D., Tsukamoto,T.,
Elhosainy,A., Mizuno,S., Miyazaki,S., Tsuneoka,Y., Sugiyama,F.,
Takahashi,S., Hayashi,Y., Muratani,M., Liu,Q., Miyoshi,C.,
Yanagisawa,M. and Funato,H.
TITLE Kinase signalling in excitatory neurons regulates sleep quantity
and depth
JOURNAL Nature 612 (7940), 512-518 (2022)
PUBMED 36477539
REFERENCE 5 (bases 1 to 5094)
AUTHORS Sharma,P., Karnam,K., Mahale,A., Sedmaki,K., Krishna Venuganti,V.
and Kulkarni,O.P.
TITLE HDAC5 RNA interference ameliorates acute renal injury by
upregulating KLF2 and inhibiting NALP3 expression in a mouse model
of oxalate nephropathy
JOURNAL Int Immunopharmacol 112, 109264 (2022)
PUBMED 36183679
REMARK GeneRIF: HDAC5 RNA interference ameliorates acute renal injury by
upregulating KLF2 and inhibiting NALP3 expression in a mouse model
of oxalate nephropathy.
REFERENCE 6 (bases 1 to 5094)
AUTHORS Lemercier,C., Verdel,A., Galloo,B., Curtet,S., Brocard,M.P. and
Khochbin,S.
TITLE mHDA1/HDAC5 histone deacetylase interacts with and represses MEF2A
transcriptional activity
JOURNAL J Biol Chem 275 (20), 15594-15599 (2000)
PUBMED 10748098
REFERENCE 7 (bases 1 to 5094)
AUTHORS Zhou,X., Richon,V.M., Rifkind,R.A. and Marks,P.A.
TITLE Identification of a transcriptional repressor related to the
noncatalytic domain of histone deacetylases 4 and 5
JOURNAL Proc Natl Acad Sci U S A 97 (3), 1056-1061 (2000)
PUBMED 10655483
REFERENCE 8 (bases 1 to 5094)
AUTHORS Kao,H.Y., Downes,M., Ordentlich,P. and Evans,R.M.
TITLE Isolation of a novel histone deacetylase reveals that class I and
class II deacetylases promote SMRT-mediated repression
JOURNAL Genes Dev 14 (1), 55-66 (2000)
PUBMED 10640276
REFERENCE 9 (bases 1 to 5094)
AUTHORS Grozinger,C.M., Hassig,C.A. and Schreiber,S.L.
TITLE Three proteins define a class of human histone deacetylases related
to yeast Hda1p
JOURNAL Proc Natl Acad Sci U S A 96 (9), 4868-4873 (1999)
PUBMED 10220385
REFERENCE 10 (bases 1 to 5094)
AUTHORS Verdel,A. and Khochbin,S.
TITLE Identification of a new family of higher eukaryotic histone
deacetylases. Coordinate expression of differentiation-dependent
chromatin modifiers
JOURNAL J Biol Chem 274 (4), 2440-2445 (1999)
PUBMED 9891014
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL954730.15.
On Apr 21, 2022 this sequence version replaced XM_036156342.1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR17784648.139112.1,
SRR13422597.1447009.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMN00849374,
SAMN00849375 [ECO:0006172]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-138 AL954730.15 63571-63708 c
139-360 AL954730.15 58300-58521 c
361-435 AL954730.15 51982-52056 c
436-695 AL954730.15 40473-40732 c
696-837 AL954730.15 40196-40337 c
838-952 AL954730.15 39988-40102 c
953-1083 AL954730.15 39356-39486 c
1084-1230 AL954730.15 39051-39197 c
1231-1343 AL954730.15 38850-38962 c
1344-1475 AL954730.15 38398-38529 c
1476-1698 AL954730.15 37997-38219 c
1699-1910 AL954730.15 36110-36321 c
1911-2192 AL954730.15 35619-35900 c
2193-2364 AL954730.15 34799-34970 c
2365-2498 AL954730.15 33966-34099 c
2499-2619 AL954730.15 33535-33655 c
2620-2669 AL954730.15 33202-33251 c
2670-2777 AL954730.15 32932-33039 c
2778-2833 AL954730.15 32571-32626 c
2834-2921 AL954730.15 32363-32450 c
2922-3041 AL954730.15 31232-31351 c
3042-3139 AL954730.15 30905-31002 c
3140-3258 AL954730.15 30625-30743 c
3259-3392 AL954730.15 30105-30238 c
3393-3477 AL954730.15 29804-29888 c
3478-3643 AL954730.15 29518-29683 c
3644-5094 AL954730.15 27984-29434 c
FEATURES Location/Qualifiers
source 1..5094
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="11"
/map="11 65.82 cM"
gene 1..5094
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="histone deacetylase 5"
/db_xref="GeneID:15184"
/db_xref="MGI:MGI:1333784"
exon 1..138
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 139..360
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
misc_feature 201..203
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="upstream in-frame stop codon"
CDS 339..3683
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/EC_number="3.5.1.98"
/note="isoform 9 is encoded by transcript variant 10;
histone deacetylase mHDA1; histone deacetylase 4"
/codon_start=1
/product="histone deacetylase 5 isoform 9"
/protein_id="NP_001392164.1"
/db_xref="GeneID:15184"
/db_xref="MGI:MGI:1333784"
/translation="
MNSPNESADGMSGREPSLEILPRTPLHSIPVAVEVKPVLPGAMPSSMGGGGGGSPSPVELRGALAGPMDPALREQQLQQELLVLKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQEMLAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQEFLLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPLLGPYDSRDDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAVEITGTGPGVSSVCNSAPGSGPSSPNSSHSTIAENGFTGSVPNIPTEMIPQHRALPLDSSPNQFSLYTSPSLPNISLGLQATVTVTNSHLTASPKLSTQQEAERQALQSLRQGGTLTGKFMSTSSIPGCLLGVALEGDTSPHGHASLLQHVLLLEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPRHRPLSRTQSSPLPQSPQALQQLVMQQQHQQFLEKQKQQQMQLGKILTKTGELSRQPTTHPEETEEELTEQQEALLGEGALTIPREGSTESESTQEDLEEEEEEEEEEEEDCIQVKDEDGESGPDEGPDLEESSAGYKKLFADAQQLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGSMKSPTDQPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVIEIQSKHWSCVQRFAAGLGCSLREAQTGEKEEAETVSAMALLSVGAEQAQAVATQEHSPRPAEEPMEQEPAL"
misc_feature 456..530
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 543..803
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Glutamine-rich N-terminal helical domain of HDAC5,
a Class IIa histone deacetylase; Region:
ClassIIa_HDAC5_Gln-rich-N; cd10164"
/db_xref="CDD:197400"
misc_feature order(546..551,555..560,567..569,579..581,588..590,
600..602,609..611,621..626,630..635,642..647,654..656,
666..668,675..677,687..689,705..707,717..719)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="dimer interface A, C [polypeptide binding]; other
site"
/db_xref="CDD:197400"
misc_feature order(555..560,567..569,579..581,588..593,600..605,
609..614,621..626,630..635,642..650,654..662,666..671,
675..683,687..692,705..710,717..725)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:197400"
misc_feature order(579..581,591..593,603..605,612..614,624..626,
633..635,645..650,657..662,669..671,681..683,690..692)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="dimer interface A, D [polypeptide binding]; other
site"
/db_xref="CDD:197400"
misc_feature order(633..635,645..647,678..683,690..692,708..710,
720..725)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="dimer interface A, B [polypeptide binding]; other
site"
/db_xref="CDD:197400"
misc_feature 897..1154
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1086..1088
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine, by AMPK, CaMK1, SIK1 and PKD/PRKD1.
/evidence=ECO:0000269|PubMed:17468767,
ECO:0000269|PubMed:21454484; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1185..1187
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphothreonine, by PKC.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1755..1823
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1803..1805
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine, by AMPK, CaMK1, SIK1 and PKD/PRKD1.
/evidence=ECO:0000269|PubMed:17468767,
ECO:0000269|PubMed:21454484; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1908..1910
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="N6-acetyllysine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); acetylation site"
misc_feature 1917..2174
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2139..2141
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 2289..2291
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 2349..3608
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Histone deacetylase 5; Region: HDAC5; cd10007"
/db_xref="CDD:212531"
misc_feature 2364..3398
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Histone deacetylase"
misc_feature order(2808..2813,2835..2840,2922..2924,2928..2930,
3204..3206,3324..3326)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="putative active site [active]"
/db_xref="CDD:212531"
misc_feature 3555..3680
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Nuclear export signal. /evidence=ECO:0000250"
misc_feature 3603..3680
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3636..3638
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
exon 361..435
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 436..695
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 696..837
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 838..952
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 953..1083
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1084..1230
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1231..1343
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1344..1475
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1476..1698
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1699..1910
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1911..2192
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2193..2364
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2365..2498
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2499..2619
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2620..2669
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2670..2777
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2778..2833
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2834..2921
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2922..3041
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3042..3139
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3140..3258
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3259..3392
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3393..3477
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3478..3643
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3644..5094
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
regulatory 3745..3750
/regulatory_class="polyA_signal_sequence"
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="hexamer: AACAAA"
polyA_site 3765
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="major polyA site"
regulatory 5062..5067
/regulatory_class="polyA_signal_sequence"
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="hexamer: AATAAA"
polyA_site 5094
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
ORIGIN
gttgttgttggtggcggcggcgagcggagccggaggagccgccgcaaagatggaggagccgtcgaggaggcgctgccgctgctgttgccgccgctgctgccgccgccgcccgcgaagccggagctcgagccgcagcggggatgccgttctgagtgcctgactgcctcgccccgccccgaaggatggccttggatgggcattagaggcactgcggccctgggctcgggctcctgtcccgtccgtctgtctgttatcgtctgtctctcttgacatcacagcagctccgccccctcccgtcccagcccccaacgtcagcttcctgcaggcccagagccggcatgaactctcccaacgagtcggcagatggcatgtcaggccgggaaccatccttggaaatcctgccacggactcctctgcacagcatccctgtggcagtggaggtgaagccggtgctgccaggagccatgcccagctccatggggggtggaggtggaggtagccccagccccgtggagcttcggggggctctggcgggccccatggaccctgcgctacgggagcagcaactgcagcaggagctcctggtcctcaagcagcagcagcagctccagaagcagctcctgttcgccgagttccagaagcagcacgaccacttgacgcggcagcacgaggtccagctgcagaagcacctcaagcagcaggagatgctggcggctaagaggcagcaggagctggagcagcagcggcagcgggagcagcagcggcaggaggagctggagaaacagcggctggagcagcagctgctcatcctgcgcaacaaggagaagagcaaagagagtgccatcgccagcaccgaggtaaagctgaggctccaggaattcctgttgtccaagtcaaaggagcccacgccaggcggcctcaaccattccctcccacagcaccccaaatgctggggagcccaccacgcttctttggaccagagttcccctccccagagcggccctcctgggacgcctccctcctacaaattgcctttgcttgggccctatgacagccgtgatgactttcccctccgtaaaacggcctcggaacccaacttaaaagtacgttcgaggctaaaacagaaggtagccgagaggagaagcagtcccctcctgcgtcgaaaggatggcactgttattagtacttttaagaagagagcagttgagatcaccggcacggggcctggggtgtcgtccgtgtgtaacagtgcgcccggctctggccccagctctcccaacagttcccacagcaccatcgctgagaacggctttactggctcagtccccaacatccccactgagatgatcccccagcaccgggccctccctctggacagttccccaaaccagttcagcctctatacgtctccttctctgcccaacatctccctagggctgcaggccactgtcactgtcaccaactcgcacctcaccgcctccccgaagctgtcaacacagcaggaggctgagaggcaggcccttcagtccctgcggcagggcggcacactgaccggcaagttcatgagcacatcctccatccctggctgcctgttgggagtggcactggagggtgacacaagcccccacgggcacgcttccctgctgcagcacgttttgctcctggagcaggcccggcaacagagcacgctcatagcagtgccgctccatgggcagtccccactggtgacgggtgaacgtgtggccaccagcatgaggacggtgggtaagctcccgaggcaccgacctctgagccgcactcagtcctccccgctgccgcagagtccccaggccctgcagcagctggtcatgcagcagcagcaccagcagttcctggagaagcagaagcagcagcagatgcagctgggcaagatccttaccaaaactggggagctgtcaaggcagcccaccactcacccggaggagacagaagaggagctgacggagcagcaggaggccttgctgggagagggggccctgaccattccccgggaaggctctacagaaagtgagagcacccaggaagacctagaagaggaggaggaggaggaggaggaggaagaggaggactgcattcaggtcaaggatgaggatggcgagagtggtcctgatgaaggccctgacttagaagagtccagtgctggttacaaaaagttgttcgcagatgcccagcagttacagcccctccaggtgtaccaggcacccctcagcctggccactgtgcctcatcaggccctgggccgcacccagtcctcacctgctgctcctgggagcatgaagagccccacagaccaacccactgtggtgaagcacctcttcaccacaggtgtggtctatgacacgttcatgctgaagcaccagtgtatgtgcggaaacacacacgtgcacccagagcacgccggccgcatccagagcatctggtcccggctgcaggaaactggtctgctcggcaagtgtgagcggatccggggtcgtaaagccacactggatgaaatccagaccgtgcactctgagtaccacaccctgctctatgggaccagcccccttaaccggcagaagctggacagcaagaagctgcttggccccatcagccagaagatgtacgccatgctgccctgtgggggcattggggtggacagtgacacggtgtggaatgagatgcactcctcaagtgccgtgcgaatggcagtgggctgcctggtggagctggccttcaaggtggctgcaggagagctcaagaatggatttgctatcatccggcccccaggacaccatgctgaggagtccacagccatgggattctgcttcttcaactccgtagccatcacagctaaactcctgcagcagaagctgagcgtgggcaaggtcctcatcgtggactgggatattcaccatggcaacggcacccagcaagcattctacaacgatccctctgtgctctacatctccctgcatcgctacgacaacgggaacttctttccaggctctggggctcctgaagaggttggtggagggccaggtgtggggtacaacgtaaatgtggcgtggacaggaggtgtggatccccccattggagatgtggaatacctgacagccttcaggacagtggtgatgcccattgcccaggagttctcacctgacgtcgtcctagtctccgctgggtttgatgctgttgaaggacatctgtctccactgggtggctattctgtcaccgccagatgttttggccacttgaccaggcagctcatgacactggctgggggccgggtggtgctggccctggagggaggccatgacttgaccgccatctgtgatgcctctgaggcctgtgtctcggctctgctcagcgtggagctgcagcccttggatgaagcagtcttgcagcaaaagcccagcgtcaatgcggttgccacactagagaaagtcatcgagatccagagcaaacactggagctgtgtacagaggtttgccgctggtctgggctgctcgctgcgggaggctcagacaggtgagaaagaggaggccgagactgtgagcgccatggccctgctttccgtgggggctgagcaggcccaggctgttgccactcaagagcacagccccaggccagcagaggagcccatggagcaggagcctgccctgtgacaccctggcccccatccctctgggcttcatcattgtgattttgtttattttttctattaaaaacaaaaagtcacacattcaacaacgtgtgccgtgtgggtctctcagcctcgcccgcctccaagctgtttcagaaccccctcccactacaagggccctgggtcagctttcgaatccattccttctatggggcattgggtgcagtacccactttgcccatgttgtatcccatacccaattccccgtactcttctaccgtggacagtgctccaggcagtactgccaactctggagctgcctgagatgggaacagtgattggtgcctggacttcagttggcttttggggaatgccttaatttgaaatctgcccctctccaccctcaggatgatgtactaccatttaagatgcagaatcgagggaaggtaggcgtccaccccaaactttcccttcctctctatctccctcaccattctgcagactctcctctttggcctcagcactgaagactcgtgcccaggatgtaggccttagacttgtggccaggcttcttgtctcttactcctgagtatcccaggagctcaaagggtaccgggtggtgtgcagcggggttagaaggggccaggaggacctgcgtatgcaggcaggttctccactttttttctattaaactctccgtcttgtgctggaccagtataaggaggggagaaggtagaccctgcatgggggcttcaggttcatgcaagcccctctgatgttctgggccagattttctccatccatcagcctgctgcaagcagaagggtcaagatccagctcccttctggagcctttttgctttgaaacctggggatcgtgaaagacagggtagatatagttctagaatagacagggccagaaccctgtctagaagccacccctgtcccccagaggtgttgggggggggggagtccagctctcagcaggaggttgttaggagctatccatcttttccagtagccttgtgtccagaggctggagcccacagacttccagtgaatgtggtctagcctgtaggaaaccaaagatgggaaatggctcctaaggggccaatttttcttcccctataccacatccccagggctcagctatctgtttccatattgtccgtatggggcctgagcagggctgagggagctggggagtcccaccactattagttttctgtgtgtttgcgtgctgtctgtatcatccttgcactgaaccagaggctgctcacctcccactctctccccgtaggctgatcttatcctgtgccaacccactcctgctttgtctccctggacatggattttagttcagtagtttgtatcccaacacatggtttttgtcttcgtgtaaataaacttatttgtggcagtgctttctgggaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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