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Previous release (v1)
2025-01-31 02:31:31, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS NM_001291000 6207 bp mRNA linear ROD 29-OCT-2024
DEFINITION Mus musculus sema domain, transmembrane domain (TM), and
cytoplasmic domain, (semaphorin) 6D (Sema6d), transcript variant 7,
mRNA.
ACCESSION NM_001291000 XM_006499117
VERSION NM_001291000.2
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 6207)
AUTHORS Thowfeequ,S., Fiorentino,J., Hu,D., Solovey,M., Ruane,S.,
Whitehead,M., Zhou,F., Godwin,J., Mateo-Otero,Y.,
Vanhaesebroeck,B., Scialdone,A. and Srinivas,S.
TITLE An integrated approach identifies the molecular underpinnings of
murine anterior visceral endoderm migration
JOURNAL Dev Cell 59 (17), 2347-2363 (2024)
PUBMED 38843837
REFERENCE 2 (bases 1 to 6207)
AUTHORS Nakanishi,Y., Izumi,M., Matsushita,H., Koyama,Y., Diez,D.,
Takamatsu,H., Koyama,S., Nishide,M., Naito,M., Mizuno,Y.,
Yamaguchi,Y., Mae,T., Noda,Y., Nakaya,K., Nojima,S., Sugihara,F.,
Okuzaki,D., Ikawa,M., Shimada,S., Kang,S. and Kumanogoh,A.
TITLE Semaphorin 6D tunes amygdalar circuits for emotional, metabolic,
and inflammatory outputs
JOURNAL Neuron 112 (17), 2955-2972 (2024)
PUBMED 39002542
REMARK GeneRIF: Semaphorin 6D tunes amygdalar circuits for emotional,
metabolic, and inflammatory outputs.
REFERENCE 3 (bases 1 to 6207)
AUTHORS Hirai,T., Naito,Y., Koyama,S., Nakanishi,Y., Masuhiro,K., Izumi,M.,
Kuge,T., Naito,M., Mizuno,Y., Yamaguchi,Y., Kang,S., Yaga,M.,
Futami,Y., Nojima,S., Nishide,M., Morita,T., Kato,Y., Tsuda,T.,
Takemoto,N., Kinugasa-Katayama,Y., Aoshi,T., Villa,J.K.,
Yamashita,K., Enokida,T., Hoshi,Y., Matsuura,K., Tahara,M.,
Takamatsu,H., Takeda,Y., Inohara,H. and Kumanogoh,A.
TITLE Sema6D forward signaling impairs T cell activation and
proliferation in head and neck cancer
JOURNAL JCI Insight 9 (3), e166349 (2024)
PUBMED 38329122
REMARK GeneRIF: Sema6D forward signaling impairs T cell activation and
proliferation in head and neck cancer.
Publication Status: Online-Only
REFERENCE 4 (bases 1 to 6207)
AUTHORS Prieur,D.S., Francius,C., Gaspar,P., Mason,C.A. and Rebsam,A.
TITLE Semaphorin-6D and Plexin-A1 Act in a Non-Cell-Autonomous Manner to
Position and Target Retinal Ganglion Cell Axons
JOURNAL J Neurosci 43 (32), 5769-5778 (2023)
PUBMED 37344233
REMARK GeneRIF: Semaphorin-6D and Plexin-A1 Act in a Non-Cell-Autonomous
Manner to Position and Target Retinal Ganglion Cell Axons.
REFERENCE 5 (bases 1 to 6207)
AUTHORS Sun,T., Zeng,H., Fan,L., Fei,J. and Chen,G.
TITLE Semaphorin 6D regulate corralling, hematoma compaction and white
matter injury in mice after intracerebral hemorrhage
JOURNAL J Stroke Cerebrovasc Dis 31 (11), 106803 (2022)
PUBMED 36174325
REMARK GeneRIF: Semaphorin 6D regulate corralling, hematoma compaction and
white matter injury in mice after intracerebral hemorrhage.
REFERENCE 6 (bases 1 to 6207)
AUTHORS Chen,B., Schaevitz,L.R. and McConnell,S.K.
TITLE Fezl regulates the differentiation and axon targeting of layer 5
subcortical projection neurons in cerebral cortex
JOURNAL Proc Natl Acad Sci U S A 102 (47), 17184-17189 (2005)
PUBMED 16284245
REFERENCE 7 (bases 1 to 6207)
AUTHORS Toyofuku,T., Zhang,H., Kumanogoh,A., Takegahara,N., Yabuki,M.,
Harada,K., Hori,M. and Kikutani,H.
TITLE Guidance of myocardial patterning in cardiac development by Sema6D
reverse signalling
JOURNAL Nat Cell Biol 6 (12), 1204-1211 (2004)
PUBMED 15543137
REMARK GeneRIF: Sema6D coordinates both compact-layer expansion and
trabeculation, functioning as both a ligand and a receptor for
Plexin-A1.
REFERENCE 8 (bases 1 to 6207)
AUTHORS Toyofuku,T., Zhang,H., Kumanogoh,A., Takegahara,N., Suto,F.,
Kamei,J., Aoki,K., Yabuki,M., Hori,M., Fujisawa,H. and Kikutani,H.
TITLE Dual roles of Sema6D in cardiac morphogenesis through
region-specific association of its receptor, Plexin-A1, with
off-track and vascular endothelial growth factor receptor type 2
JOURNAL Genes Dev 18 (4), 435-447 (2004)
PUBMED 14977921
REMARK GeneRIF: Plexin-S1, with Sema6D, exerts distinct biological
activities at adjacent regions, crucial for complex cardiac
morphogenesis.
REFERENCE 9 (bases 1 to 6207)
AUTHORS Taniguchi,M. and Shimizu,T.
TITLE Characterization of a novel member of murine semaphorin family
JOURNAL Biochem Biophys Res Commun 314 (1), 242-248 (2004)
PUBMED 14715272
REFERENCE 10 (bases 1 to 6207)
AUTHORS Qu,X., Wei,H., Zhai,Y., Que,H., Chen,Q., Tang,F., Wu,Y., Xing,G.,
Zhu,Y., Liu,S., Fan,M. and He,F.
TITLE Identification, characterization, and functional study of the two
novel human members of the semaphorin gene family
JOURNAL J Biol Chem 277 (38), 35574-35585 (2002)
PUBMED 12110693
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL929517.8 and AL935323.6.
On May 27, 2022 this sequence version replaced NM_001291000.1.
Transcript Variant: This variant (7) uses an alternate in-frame
splice site and contains two additional in-frame exons in the
central coding region, compared to variant 1. The encoded isoform
(3) is longer than isoform Sema6D-1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AK031307.1, SRR7652917.1271807.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMN00849375, SAMN00849380
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-461 AL929517.8 53058-53518
462-624 AL935323.6 40229-40391
625-736 AL935323.6 40795-40906
737-797 AL935323.6 41444-41504
798-860 AL935323.6 41626-41688
861-962 AL935323.6 41801-41902
963-1053 AL935323.6 42134-42224
1054-1173 AL935323.6 42658-42777
1174-1262 AL935323.6 43478-43566
1263-1480 AL935323.6 44292-44509
1481-1612 AL935323.6 44619-44750
1613-1768 AL935323.6 45058-45213
1769-1942 AL935323.6 45294-45467
1943-2083 AL935323.6 46216-46356
2084-2161 AL935323.6 46455-46532
2162-2223 AL935323.6 46931-46992
2224-2280 AL935323.6 47353-47409
2281-2436 AL935323.6 48852-49007
2437-6207 AL935323.6 50669-54439
FEATURES Location/Qualifiers
source 1..6207
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="2"
/map="2 60.69 cM"
gene 1..6207
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="sema domain, transmembrane domain (TM), and
cytoplasmic domain, (semaphorin) 6D"
/db_xref="GeneID:214968"
/db_xref="MGI:MGI:2387661"
exon 1..461
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 462..624
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
misc_feature 480..482
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="upstream in-frame stop codon"
CDS 516..3725
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="isoform 3 precursor is encoded by transcript
variant 7; semaphorin-6D"
/codon_start=1
/product="semaphorin-6D isoform 3 precursor"
/protein_id="NP_001277929.1"
/db_xref="CCDS:CCDS71132.1"
/db_xref="GeneID:214968"
/db_xref="MGI:MGI:2387661"
/translation="
MGFLLLWFCVLFLLVSRLRAVSFPEDDEPLNTVDYHYSRQYPVFRGRPSGNESQHRLDFQLMLKIRDTLYIAGRDQVYTVNLNEIPQTEVIPSKKLTWRSRQQDRENCAMKGKHKDECHNFIKVFVPRNDEMVFVCGTNAFNPMCRYYRLRTLEYDGEEISGLARCPFDARQTNVALFADGKLYSATVADFLASDAVIYRSMGDGSALRTIKYDSKWIKEPHFLHAIEYGNYVYFFFREIAVEHNNLGKAVYSRVARICKNDMGGSQRVLEKHWTSFLKARLNCSVPGDSFFYFDVLQSITDIIQINGIPTVVGVFTTQLNSIPGSAVCAFSMDDIEKVFKGRFKEQKTPDSVWTAVPEDKVPKPRPGCCAKHGLAEAYKTSIDFPDDTLAFIKSHPLMDSAVPPIADEPWFTKTRVRYRLTAIEVDRSAGPYQNYTVIFVGSEAGVVLKVLAKTSPFSLNDSVLLEEIEAYNPAKCSAESEEDRKVVSLQLDKDHHALYVAFSSCVVRIPLSRCERYGSCKKSCIASRDPYCGWLSQGVCERVTLGMLPGGYEQDTEYGNTAHLGDCHESLPPSTTPDYKIFGGPTSDMEVSSSSVTTVASSPEITSKVIDTWRPKLTSSRKFVVQDDPNTSDFTDTISGVRWEVQSGESNQMVHMNVLITCVFAAFVLGAFIAGVAVYCYRDMFVRKNRKIHKDAESAQSCTDSSGSFAKLNGLFDSPVKEYQQNIDSPKLYSNLLTSRKELPPNTDTKSMAVDHRGQPPELAALPTPESTPVLHQKTLQAMKSHSEKAHSHGASRKEHPQFFPSSPPPHSPLSHGHIPSAIVLPNATHDYNTSFSNSNAHKAEKKLQSMDHPLTKSSSKREHRRSVDSRNTLNDLLKHLNDPNSNPKAILGEIHMAHQTLMLDPVGPMAEVPPKVPNREASLYSPPSTLPRNSPTKRVDVPTTPGVPMTSLERQRGYHKNSSQRHSISAVPKNLNSPNGVLLSRQPSMNRGGYMPTPTGAKVDYIQGTPVSVHLQPSLSRQSSYTSNGTLPRTGLKRTPSLKPDVPPKPSFVPQTTSVRPLNKYTY"
sig_peptide 516..575
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="COORDINATES: ab initio prediction:SignalP:6.0"
misc_feature 660..2054
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="The Sema domain, a protein interacting module, of
semaphorins and plexins; Region: Sema; cl15693"
/db_xref="CDD:472829"
misc_feature 666..668
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1362..1364
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1818..1820
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 1896..1898
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 2055..2222
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Plexin repeat; Region: PSI; pfam01437"
/db_xref="CDD:396154"
misc_feature 2406..2408
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); glycosylation site"
misc_feature 2490..2552
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
transmembrane region"
misc_feature 2670..2672
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2703..2705
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21183079; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2733..2735
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 2736..2978
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2820..2822
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphothreonine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 3018..3131
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature <3228..3671
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
misc_feature 3258..3461
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3294..3296
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 3372..3374
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 3450..3452
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q8NFY4; propagated from
UniProtKB/Swiss-Prot (Q76KF0.1); phosphorylation site"
misc_feature 3564..3722
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="propagated from UniProtKB/Swiss-Prot (Q76KF0.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 625..736
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 737..797
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 798..860
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 861..962
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 963..1053
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1054..1173
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1174..1262
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1263..1480
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1481..1612
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1613..1768
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1769..1942
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 1943..2083
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 2084..2161
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 2162..2223
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 2224..2280
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 2281..2436
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
exon 2437..6207
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/inference="alignment:Splign:2.1.0"
regulatory 6166..6171
/regulatory_class="polyA_signal_sequence"
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="hexamer: AATAAA"
regulatory 6183..6188
/regulatory_class="polyA_signal_sequence"
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="hexamer: ATTACA"
polyA_site 6186
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
/note="major polyA site"
polyA_site 6207
/gene="Sema6d"
/gene_synonym="1110067B02Rik; D330011G23; mKIAA1479"
ORIGIN
agtttcttcttggcagggccggctcggcgccgctccgcaagccgtcagggtgagcccgccttcctcgctgcggggcttggagcctccagcccgcccgcagcgcagcccgggccgccgggccagcttcggccgggagaacgcagggacagcctgggagtgcggagccactgactgtccacgcggggaccgtgagcacccactcgcgggtctcccagccactctcccccgcaactttgcgtgctttgttctctggctgaaaaaatgctccacagaagcgccatagaccgggtctcctccaggcggcaagggctcggccgggagacgtgttacgctctcagctccccatcaattatggatggaaacaaataaggaaaagtcaattttgtatgagccgcgtctttcgcagccagaggcgtcttgtagcctggagcagaggcaggcaaaccgagcccaacaaccaggtagctaagtgggacttctgaggagggggagctcagatttcttcttggccaaccatggggttccttctgctttggttctgcgtgctgttccttctggtctccaggttacgggcggtcagcttcccagaagacgatgagcccctcaacacggttgactatcactattcaaggcaatatccggtttttagaggacgcccttcaggcaacgaatcgcagcacaggctggactttcagctgatgttgaaaattcgagacacactttatattgctggcagggatcaagtctatacagtgaacttaaatgaaatcccccaaacagaggtgataccaagcaagaagctgacgtggaggtccagacagcaggatcgagaaaattgtgctatgaaaggcaagcataaagatgaatgccacaacttcatcaaagtctttgtcccaagaaatgatgagatggtttttgtctgtggtaccaatgctttcaacccgatgtgcagatactataggttgagaacgttagagtatgatggggaagaaattagtggcctggcacgatgcccgtttgatgcccgacaaaccaatgtcgccctctttgctgatggaaaactctattctgccacagtggctgatttcctggccagtgatgctgtcatttacagaagcatgggagatggatctgcccttcgcacaataaaatacgattccaagtggatcaaagaaccacacttccttcatgccatagaatatggaaactatgtctatttcttcttcagagaaatcgccgtggaacataataacttaggcaaggctgtgtattcccgcgtggctcgcatttgtaaaaacgacatgggtggctcacagcgggtcctggagaaacactggacttccttccttaaggctcggctgaactgctccgttcctggagattcctttttctacttcgacgtcctgcagtctataacagacataatccaaatcaatggcatccccactgtggttggggtcttcaccacacagctcaacagcattcctggttctgcagtctgtgcctttagcatggacgacattgagaaagtgttcaaagggcggttcaaagagcagaaaaccccagactctgtttggacagcagttcccgaagacaaagtaccaaaaccaaggcctggctgttgtgccaaacacggcctcgcagaagcttacaagacctccatcgactttccagatgacaccctggctttcatcaagtcccacccgctgatggactctgccgtcccacccattgccgatgagccctggttcacaaagacacgggtcaggtacaggttgacagccatcgaagtggaccgttcagcagggccataccaaaactacacagtcatctttgttggctctgaagctggcgtggtacttaaagttttggcaaagaccagtcctttctctctgaatgacagtgtattactcgaagagattgaagcttataacccagccaagtgcagcgccgagagtgaggaggacagaaaggtggtctcattacagctggacaaggatcaccatgctttatacgtggccttctctagctgcgtggtccgcatccccctcagccgctgtgagcgctacggatcgtgtaaaaagtcttgcattgcatcacgtgacccgtactgtggttggttaagccagggagtttgtgagagagtgaccctagggatgctccctggaggatatgagcaggacacggagtacggcaacacagcccacctaggggactgccacgaaagtttgcctccttcaactacaccagattacaaaatatttggcggtccaacatctgacatggaggtatcctcatcttctgttaccactgtggcaagtagcccagaaattacatctaaagtgattgatacctggagacctaaactgacgagctcccggaaatttgtagttcaagatgacccaaatacttctgattttactgatactatatcaggtgtacggtgggaagtccagtctggagaatccaatcagatggtccacatgaatgtcctcatcacctgcgtgtttgccgcttttgtcttgggcgcgttcatcgcaggagtggccgtgtactgctaccgtgacatgttcgttcggaagaacagaaagatccataaagacgcagaatccgcccagtcgtgcacagactccagcggaagcttcgccaagctgaacggcctctttgacagccccgtcaaggaataccagcagaacattgattctcccaaactctacagcaacctgctgaccagtcggaaggaactgccaccaaacacggatacaaagtccatggccgtggaccacagaggccagcctcccgagctggctgctctccccacgccggaatccacacctgtcctccaccagaagaccctgcaggccatgaagagccactctgagaaggcccacagccacggtgcttcaaggaaagaacacccccagttttttccttctagtcctccaccccattccccattgagtcacgggcatatccccagtgccatcgttcttccaaacgccactcacgactacaatacatccttctccaactcgaatgcccacaaagccgaaaagaagcttcagagcatggatcaccctcttacgaagtcatccagtaagcgggagcaccggcggtctgtggattccaggaatactctcaatgatctcctgaagcatctaaatgacccaaacagtaaccccaaagccatcctgggagagatccatatggctcatcaaaccctcatgctggacccggtgggaccaatggctgaggtcccacccaaggtccctaaccgggaggcatctctatactcccctccctccacactccccagaaatagtccaaccaagagagtagatgtccccaccactcctggggtgccaatgacttctctggaaagacaaaggggttatcacaaaaattcctcccagaggcactctatatctgccgtgcctaaaaacttaaactcaccaaatggtgttttgttatctagacagccgagtatgaaccgtggaggctatatgcccaccccaacaggggcgaaggtggactatattcaggggacaccggtgagtgttcatctgcagccctccctctccagacagagcagctataccagtaatggcaccctccccaggacgggactaaagaggacaccatccttaaaacctgatgtgccaccaaagccttcctttgttccgcaaaccacatctgtcagaccactgaacaagtacacgtactaggcctcaagtatgctattcccgtgtggctttatcctgtccctgctgttgcgaggaagctgtgagggtaccttcagatgagatacctgcttgtattttaagagaaacaagtagccaaagaaactctgtcactttggtaacaccagaacttgccacatgtagctactacagcaaggcttctgtgtacttgccggaaacgaagggaggtcctgctcactccatttctttcgtttgaagcagaagggatgtgtagccagggaaggctcccttcaccagtgtaaagagctgatacagtactcagaagactgaacaaatacttgaaaatgggttcaatgtagactgccattctgtgtggtcttcccattaaatgtgaacattttaatatgtatgcattcaccttgcctcttgcacaaatgtcaaaatggaaagatgggaatgtctcaaaacaaaatgagcttggagattaccaagcagtttgctgaaaattcaatctttgacccaaactgtagcaatttttattttctgagtgtggcactgttttgttttatttttttgttttgttttgtttttcaatgccaccaacaaactatgttaagagaggggcgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagagagagagagagagagagagagagagagagatctacccattagaattgatttaggtgcccattgcatcttttgtactatggagttgtttacagtaagcatgactgaacaagcactaacatcctcctacaccggtccatcgtgttcggctctgatcaggaatagacaaggcttctttgactgtcaagtgattaacatatggtacccggtgtcagaacatttaagcgttctaaataattttgtgctgctatccatcagaacgtctattccagccttgccagcttaagaacttagagaaattaagaggtatctttgatgtatctaccagtattcaatagtaacatttacctgtccactgtgaatcaaagcctggggcacgctactcaaccttagacacacttacaggcttttattttgattgtgttattttattttccatacagtaaaaaatgtcctctcttaactcctctcacccccaactcccaaggcaaaagagaaaccaaaagtaggacaaaagaaagagacagacagacagacagacagaacaggaattacagttggcttagcagggaggatctgtagagctctcgatgatccttcctccatgtgtgtcctgtgaggattttgctcatgagtcatgcaggcagtgacagtgaactgtaaataccacatgtgagtttacctggatctgtgcattttgtgccttattcactcgagtggtagaagttccgcggtatgttgagtgtttccactacagagcatcatttcccatgtgccacttgtaaatgttttgcagccagcacctgaggacttcttatacagtcataaagccacctagagcgatttgttgttgagcaacgccgccccttccctccaggatcagaagcagcacccacccttgccatgataaacattccatcccctgctgttctgataatgtgaagtcagatgagggttcccaggttatgtggcacctgcggaaaccatgtctagagtcgtttctatgtagcttggcagagcccactgatggctgcaggtgtgtagcctactgacagctttggttaacccactgcacatcacccagtcatttacccaacttactctagaaatgtccacagctaaggaaggctcctgagccagtcaggcggagttcaagtgatatcttgggacagtgaccatggtctgcattacttgggggaggatggggtacaagacaccagatcatttttatacaggatgtagagtactgatgcggttgatcttttccttcaagaacattcttttctatagaaaaatgattccctgtgatcttctggaagctccaaagctgaaacccttcagctttgcaactaaaaatattacagtttaataatcaattaaaccaaccaacaataagcactacacatctgccaccaacaatgttgtttgcatttaccttaccaatattaatcccagcgtggtaactctgtgtgaccccgataacattttgtaacattgtgctgccttagagtttgtactgtgagttctatcagtatttatgttgaaatttctaacatggattctagtctctattctgttaatttaattttaaatgctttatccatttgtgcaaaggtaaacacagattgtatcttttttaatggtacggcataaaaaaataaccctaaagtgaagtggctctatactgttttatagagtactttaacgtgtatagatatcttgtaaacttgtattgtggatgtgtaaataatatgtactttgggtttttaacaccgcatgtaaagtcaaaataaaatatccaagtcattacatcctgccttttgatgttaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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