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Previous release (v1)
2024-11-01 10:30:07, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001077696 5097 bp mRNA linear ROD 02-JUN-2024
DEFINITION Mus musculus histone deacetylase 5 (Hdac5), transcript variant 1,
mRNA.
ACCESSION NM_001077696
VERSION NM_001077696.2
KEYWORDS RefSeq.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 5097)
AUTHORS Zhao,Y., Wang,H., Tang,Y., Wang,J., Wu,X., He,Z., He,Y. and Tang,Z.
TITLE SNHG16/miR-205/HDAC5 is involved in the progression of renal
fibrosis
JOURNAL J Biochem Mol Toxicol 38 (1), e23617 (2024)
PUBMED 38079211
REMARK GeneRIF: SNHG16/miR-205/HDAC5 is involved in the progression of
renal fibrosis.
REFERENCE 2 (bases 1 to 5097)
AUTHORS Zhu,C., Piao,Z. and Jin,L.
TITLE HDAC5 inhibition attenuates ventricular remodeling and cardiac
dysfunction
JOURNAL Orphanet J Rare Dis 18 (1), 266 (2023)
PUBMED 37667300
REMARK GeneRIF: HDAC5 inhibition attenuates ventricular remodeling and
cardiac dysfunction.
Publication Status: Online-Only
REFERENCE 3 (bases 1 to 5097)
AUTHORS Wang,J., Wu,S., Liu,L., Pang,Y., Li,Z. and Mu,H.
TITLE HDAC5-Mediated Acetylation of p100 Suppresses Its Processing
JOURNAL Int Dent J 73 (3), 387-394 (2023)
PUBMED 36156247
REMARK GeneRIF: HDAC5-Mediated Acetylation of p100 Suppresses Its
Processing.
REFERENCE 4 (bases 1 to 5097)
AUTHORS Kim,S.J., Hotta-Hirashima,N., Asano,F., Kitazono,T., Iwasaki,K.,
Nakata,S., Komiya,H., Asama,N., Matsuoka,T., Fujiyama,T., Ikkyu,A.,
Kakizaki,M., Kanno,S., Choi,J., Kumar,D., Tsukamoto,T.,
Elhosainy,A., Mizuno,S., Miyazaki,S., Tsuneoka,Y., Sugiyama,F.,
Takahashi,S., Hayashi,Y., Muratani,M., Liu,Q., Miyoshi,C.,
Yanagisawa,M. and Funato,H.
TITLE Kinase signalling in excitatory neurons regulates sleep quantity
and depth
JOURNAL Nature 612 (7940), 512-518 (2022)
PUBMED 36477539
REFERENCE 5 (bases 1 to 5097)
AUTHORS Sharma,P., Karnam,K., Mahale,A., Sedmaki,K., Krishna Venuganti,V.
and Kulkarni,O.P.
TITLE HDAC5 RNA interference ameliorates acute renal injury by
upregulating KLF2 and inhibiting NALP3 expression in a mouse model
of oxalate nephropathy
JOURNAL Int Immunopharmacol 112, 109264 (2022)
PUBMED 36183679
REMARK GeneRIF: HDAC5 RNA interference ameliorates acute renal injury by
upregulating KLF2 and inhibiting NALP3 expression in a mouse model
of oxalate nephropathy.
REFERENCE 6 (bases 1 to 5097)
AUTHORS Lemercier,C., Verdel,A., Galloo,B., Curtet,S., Brocard,M.P. and
Khochbin,S.
TITLE mHDA1/HDAC5 histone deacetylase interacts with and represses MEF2A
transcriptional activity
JOURNAL J Biol Chem 275 (20), 15594-15599 (2000)
PUBMED 10748098
REFERENCE 7 (bases 1 to 5097)
AUTHORS Zhou,X., Richon,V.M., Rifkind,R.A. and Marks,P.A.
TITLE Identification of a transcriptional repressor related to the
noncatalytic domain of histone deacetylases 4 and 5
JOURNAL Proc Natl Acad Sci U S A 97 (3), 1056-1061 (2000)
PUBMED 10655483
REFERENCE 8 (bases 1 to 5097)
AUTHORS Kao,H.Y., Downes,M., Ordentlich,P. and Evans,R.M.
TITLE Isolation of a novel histone deacetylase reveals that class I and
class II deacetylases promote SMRT-mediated repression
JOURNAL Genes Dev 14 (1), 55-66 (2000)
PUBMED 10640276
REFERENCE 9 (bases 1 to 5097)
AUTHORS Grozinger,C.M., Hassig,C.A. and Schreiber,S.L.
TITLE Three proteins define a class of human histone deacetylases related
to yeast Hda1p
JOURNAL Proc Natl Acad Sci U S A 96 (9), 4868-4873 (1999)
PUBMED 10220385
REFERENCE 10 (bases 1 to 5097)
AUTHORS Verdel,A. and Khochbin,S.
TITLE Identification of a new family of higher eukaryotic histone
deacetylases. Coordinate expression of differentiation-dependent
chromatin modifiers
JOURNAL J Biol Chem 274 (4), 2440-2445 (1999)
PUBMED 9891014
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
AL954730.15.
On Apr 21, 2022 this sequence version replaced NM_001077696.1.
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: AK155335.1, AK146483.1 [ECO:0000332]
RNAseq introns :: mixed sample support SAMN00849374,
SAMN00849375 [ECO:0006172]
##Evidence-Data-END##
COMPLETENESS: complete on the 3' end.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-138 AL954730.15 63571-63708 c
139-360 AL954730.15 58300-58521 c
361-435 AL954730.15 51982-52056 c
436-695 AL954730.15 40473-40732 c
696-840 AL954730.15 40196-40340 c
841-955 AL954730.15 39988-40102 c
956-1086 AL954730.15 39356-39486 c
1087-1233 AL954730.15 39051-39197 c
1234-1346 AL954730.15 38850-38962 c
1347-1478 AL954730.15 38398-38529 c
1479-1701 AL954730.15 37997-38219 c
1702-1913 AL954730.15 36110-36321 c
1914-2195 AL954730.15 35619-35900 c
2196-2367 AL954730.15 34799-34970 c
2368-2501 AL954730.15 33966-34099 c
2502-2622 AL954730.15 33535-33655 c
2623-2672 AL954730.15 33202-33251 c
2673-2780 AL954730.15 32932-33039 c
2781-2836 AL954730.15 32571-32626 c
2837-2924 AL954730.15 32363-32450 c
2925-3044 AL954730.15 31232-31351 c
3045-3142 AL954730.15 30905-31002 c
3143-3261 AL954730.15 30625-30743 c
3262-3395 AL954730.15 30105-30238 c
3396-3480 AL954730.15 29804-29888 c
3481-3646 AL954730.15 29518-29683 c
3647-5097 AL954730.15 27984-29434 c
FEATURES Location/Qualifiers
source 1..5097
/organism="Mus musculus"
/mol_type="mRNA"
/strain="C57BL/6"
/db_xref="taxon:10090"
/chromosome="11"
/map="11 65.82 cM"
gene 1..5097
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="histone deacetylase 5"
/db_xref="GeneID:15184"
/db_xref="MGI:MGI:1333784"
exon 1..138
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 139..360
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
misc_feature 201..203
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="upstream in-frame stop codon"
CDS 339..3686
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/EC_number="3.5.1.98"
/note="isoform 1 is encoded by transcript variant 1;
histone deacetylase mHDA1; histone deacetylase 4"
/codon_start=1
/product="histone deacetylase 5 isoform 1"
/protein_id="NP_001071164.1"
/db_xref="CCDS:CCDS36341.1"
/db_xref="GeneID:15184"
/db_xref="MGI:MGI:1333784"
/translation="
MNSPNESADGMSGREPSLEILPRTPLHSIPVAVEVKPVLPGAMPSSMGGGGGGSPSPVELRGALAGPMDPALREQQLQQELLVLKQQQQLQKQLLFAEFQKQHDHLTRQHEVQLQKHLKQQQEMLAAKRQQELEQQRQREQQRQEELEKQRLEQQLLILRNKEKSKESAIASTEVKLRLQEFLLSKSKEPTPGGLNHSLPQHPKCWGAHHASLDQSSPPQSGPPGTPPSYKLPLLGPYDSRDDFPLRKTASEPNLKVRSRLKQKVAERRSSPLLRRKDGTVISTFKKRAVEITGTGPGVSSVCNSAPGSGPSSPNSSHSTIAENGFTGSVPNIPTEMIPQHRALPLDSSPNQFSLYTSPSLPNISLGLQATVTVTNSHLTASPKLSTQQEAERQALQSLRQGGTLTGKFMSTSSIPGCLLGVALEGDTSPHGHASLLQHVLLLEQARQQSTLIAVPLHGQSPLVTGERVATSMRTVGKLPRHRPLSRTQSSPLPQSPQALQQLVMQQQHQQFLEKQKQQQMQLGKILTKTGELSRQPTTHPEETEEELTEQQEALLGEGALTIPREGSTESESTQEDLEEEEEEEEEEEEDCIQVKDEDGESGPDEGPDLEESSAGYKKLFADAQQLQPLQVYQAPLSLATVPHQALGRTQSSPAAPGSMKSPTDQPTVVKHLFTTGVVYDTFMLKHQCMCGNTHVHPEHAGRIQSIWSRLQETGLLGKCERIRGRKATLDEIQTVHSEYHTLLYGTSPLNRQKLDSKKLLGPISQKMYAMLPCGGIGVDSDTVWNEMHSSSAVRMAVGCLVELAFKVAAGELKNGFAIIRPPGHHAEESTAMGFCFFNSVAITAKLLQQKLSVGKVLIVDWDIHHGNGTQQAFYNDPSVLYISLHRYDNGNFFPGSGAPEEVGGGPGVGYNVNVAWTGGVDPPIGDVEYLTAFRTVVMPIAQEFSPDVVLVSAGFDAVEGHLSPLGGYSVTARCFGHLTRQLMTLAGGRVVLALEGGHDLTAICDASEACVSALLSVELQPLDEAVLQQKPSVNAVATLEKVIEIQSKHWSCVQRFAAGLGCSLREAQTGEKEEAETVSAMALLSVGAEQAQAVATQEHSPRPAEEPMEQEPAL"
misc_feature 456..530
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 543..806
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Glutamine-rich N-terminal helical domain of various
Class IIa histone deacetylases (HDAC4, HDAC5 and HDCA9);
Region: ClassIIa_HDAC_Gln-rich-N; cl25407"
/db_xref="CDD:421006"
misc_feature order(546..551,555..560,567..569,579..581,588..593,
600..605,609..614,621..626,630..635,642..650,654..662,
666..671,708..713,720..728)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="tetramer interface [polypeptide binding]; other
site"
/db_xref="CDD:197397"
misc_feature order(546..551,555..560,567..569,579..581,588..590,
600..602,609..611,621..626,630..635,642..647,654..656,
666..668,708..710,720..722)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="dimer interface A, C [polypeptide binding]; other
site"
/db_xref="CDD:197397"
misc_feature order(579..581,591..593,603..605,612..614,624..626,
633..635,645..650,657..662,669..671)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="dimer interface A, D [polypeptide binding]; other
site"
/db_xref="CDD:197397"
misc_feature 900..1157
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1089..1091
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine, by AMPK, CaMK1, SIK1 and PKD/PRKD1.
/evidence=ECO:0000269|PubMed:17468767,
ECO:0000269|PubMed:21454484; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1188..1190
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphothreonine, by PKC.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1758..1826
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1806..1808
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine, by AMPK, CaMK1, SIK1 and PKD/PRKD1.
/evidence=ECO:0000269|PubMed:17468767,
ECO:0000269|PubMed:21454484; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 1911..1913
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="N6-acetyllysine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); acetylation site"
misc_feature 1920..2177
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2142..2144
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 2292..2294
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
misc_feature 2352..3611
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Histone deacetylase 5; Region: HDAC5; cd10007"
/db_xref="CDD:212531"
misc_feature 2367..3401
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Histone deacetylase"
misc_feature order(2811..2816,2838..2843,2925..2927,2931..2933,
3207..3209,3327..3329)
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="putative active site [active]"
/db_xref="CDD:212531"
misc_feature 3558..3683
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Nuclear export signal. /evidence=ECO:0000250"
misc_feature 3606..3683
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="propagated from UniProtKB/Swiss-Prot (Q9Z2V6.2);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3639..3641
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="Phosphoserine.
/evidence=ECO:0000250|UniProtKB:Q9UQL6; propagated from
UniProtKB/Swiss-Prot (Q9Z2V6.2); phosphorylation site"
exon 361..435
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 436..695
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 696..840
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 841..955
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 956..1086
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1087..1233
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1234..1346
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1347..1478
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1479..1701
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1702..1913
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 1914..2195
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2196..2367
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2368..2501
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2502..2622
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2623..2672
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2673..2780
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2781..2836
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2837..2924
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 2925..3044
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3045..3142
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3143..3261
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3262..3395
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3396..3480
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3481..3646
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
exon 3647..5097
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/inference="alignment:Splign:2.1.0"
regulatory 3748..3753
/regulatory_class="polyA_signal_sequence"
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="hexamer: AACAAA"
polyA_site 3768
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="major polyA site"
regulatory 5065..5070
/regulatory_class="polyA_signal_sequence"
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
/note="hexamer: AATAAA"
polyA_site 5097
/gene="Hdac5"
/gene_synonym="HD5; Hdac4; mHDA1; mKIAA0600"
ORIGIN
gttgttgttggtggcggcggcgagcggagccggaggagccgccgcaaagatggaggagccgtcgaggaggcgctgccgctgctgttgccgccgctgctgccgccgccgcccgcgaagccggagctcgagccgcagcggggatgccgttctgagtgcctgactgcctcgccccgccccgaaggatggccttggatgggcattagaggcactgcggccctgggctcgggctcctgtcccgtccgtctgtctgttatcgtctgtctctcttgacatcacagcagctccgccccctcccgtcccagcccccaacgtcagcttcctgcaggcccagagccggcatgaactctcccaacgagtcggcagatggcatgtcaggccgggaaccatccttggaaatcctgccacggactcctctgcacagcatccctgtggcagtggaggtgaagccggtgctgccaggagccatgcccagctccatggggggtggaggtggaggtagccccagccccgtggagcttcggggggctctggcgggccccatggaccctgcgctacgggagcagcaactgcagcaggagctcctggtcctcaagcagcagcagcagctccagaagcagctcctgttcgccgagttccagaagcagcacgaccacttgacgcggcagcacgaggtccagctgcagaagcacctcaagcagcagcaggagatgctggcggctaagaggcagcaggagctggagcagcagcggcagcgggagcagcagcggcaggaggagctggagaaacagcggctggagcagcagctgctcatcctgcgcaacaaggagaagagcaaagagagtgccatcgccagcaccgaggtaaagctgaggctccaggaattcctgttgtccaagtcaaaggagcccacgccaggcggcctcaaccattccctcccacagcaccccaaatgctggggagcccaccacgcttctttggaccagagttcccctccccagagcggccctcctgggacgcctccctcctacaaattgcctttgcttgggccctatgacagccgtgatgactttcccctccgtaaaacggcctcggaacccaacttaaaagtacgttcgaggctaaaacagaaggtagccgagaggagaagcagtcccctcctgcgtcgaaaggatggcactgttattagtacttttaagaagagagcagttgagatcaccggcacggggcctggggtgtcgtccgtgtgtaacagtgcgcccggctctggccccagctctcccaacagttcccacagcaccatcgctgagaacggctttactggctcagtccccaacatccccactgagatgatcccccagcaccgggccctccctctggacagttccccaaaccagttcagcctctatacgtctccttctctgcccaacatctccctagggctgcaggccactgtcactgtcaccaactcgcacctcaccgcctccccgaagctgtcaacacagcaggaggctgagaggcaggcccttcagtccctgcggcagggcggcacactgaccggcaagttcatgagcacatcctccatccctggctgcctgttgggagtggcactggagggtgacacaagcccccacgggcacgcttccctgctgcagcacgttttgctcctggagcaggcccggcaacagagcacgctcatagcagtgccgctccatgggcagtccccactggtgacgggtgaacgtgtggccaccagcatgaggacggtgggtaagctcccgaggcaccgacctctgagccgcactcagtcctccccgctgccgcagagtccccaggccctgcagcagctggtcatgcagcagcagcaccagcagttcctggagaagcagaagcagcagcagatgcagctgggcaagatccttaccaaaactggggagctgtcaaggcagcccaccactcacccggaggagacagaagaggagctgacggagcagcaggaggccttgctgggagagggggccctgaccattccccgggaaggctctacagaaagtgagagcacccaggaagacctagaagaggaggaggaggaggaggaggaggaagaggaggactgcattcaggtcaaggatgaggatggcgagagtggtcctgatgaaggccctgacttagaagagtccagtgctggttacaaaaagttgttcgcagatgcccagcagttacagcccctccaggtgtaccaggcacccctcagcctggccactgtgcctcatcaggccctgggccgcacccagtcctcacctgctgctcctgggagcatgaagagccccacagaccaacccactgtggtgaagcacctcttcaccacaggtgtggtctatgacacgttcatgctgaagcaccagtgtatgtgcggaaacacacacgtgcacccagagcacgccggccgcatccagagcatctggtcccggctgcaggaaactggtctgctcggcaagtgtgagcggatccggggtcgtaaagccacactggatgaaatccagaccgtgcactctgagtaccacaccctgctctatgggaccagcccccttaaccggcagaagctggacagcaagaagctgcttggccccatcagccagaagatgtacgccatgctgccctgtgggggcattggggtggacagtgacacggtgtggaatgagatgcactcctcaagtgccgtgcgaatggcagtgggctgcctggtggagctggccttcaaggtggctgcaggagagctcaagaatggatttgctatcatccggcccccaggacaccatgctgaggagtccacagccatgggattctgcttcttcaactccgtagccatcacagctaaactcctgcagcagaagctgagcgtgggcaaggtcctcatcgtggactgggatattcaccatggcaacggcacccagcaagcattctacaacgatccctctgtgctctacatctccctgcatcgctacgacaacgggaacttctttccaggctctggggctcctgaagaggttggtggagggccaggtgtggggtacaacgtaaatgtggcgtggacaggaggtgtggatccccccattggagatgtggaatacctgacagccttcaggacagtggtgatgcccattgcccaggagttctcacctgacgtcgtcctagtctccgctgggtttgatgctgttgaaggacatctgtctccactgggtggctattctgtcaccgccagatgttttggccacttgaccaggcagctcatgacactggctgggggccgggtggtgctggccctggagggaggccatgacttgaccgccatctgtgatgcctctgaggcctgtgtctcggctctgctcagcgtggagctgcagcccttggatgaagcagtcttgcagcaaaagcccagcgtcaatgcggttgccacactagagaaagtcatcgagatccagagcaaacactggagctgtgtacagaggtttgccgctggtctgggctgctcgctgcgggaggctcagacaggtgagaaagaggaggccgagactgtgagcgccatggccctgctttccgtgggggctgagcaggcccaggctgttgccactcaagagcacagccccaggccagcagaggagcccatggagcaggagcctgccctgtgacaccctggcccccatccctctgggcttcatcattgtgattttgtttattttttctattaaaaacaaaaagtcacacattcaacaacgtgtgccgtgtgggtctctcagcctcgcccgcctccaagctgtttcagaaccccctcccactacaagggccctgggtcagctttcgaatccattccttctatggggcattgggtgcagtacccactttgcccatgttgtatcccatacccaattccccgtactcttctaccgtggacagtgctccaggcagtactgccaactctggagctgcctgagatgggaacagtgattggtgcctggacttcagttggcttttggggaatgccttaatttgaaatctgcccctctccaccctcaggatgatgtactaccatttaagatgcagaatcgagggaaggtaggcgtccaccccaaactttcccttcctctctatctccctcaccattctgcagactctcctctttggcctcagcactgaagactcgtgcccaggatgtaggccttagacttgtggccaggcttcttgtctcttactcctgagtatcccaggagctcaaagggtaccgggtggtgtgcagcggggttagaaggggccaggaggacctgcgtatgcaggcaggttctccactttttttctattaaactctccgtcttgtgctggaccagtataaggaggggagaaggtagaccctgcatgggggcttcaggttcatgcaagcccctctgatgttctgggccagattttctccatccatcagcctgctgcaagcagaagggtcaagatccagctcccttctggagcctttttgctttgaaacctggggatcgtgaaagacagggtagatatagttctagaatagacagggccagaaccctgtctagaagccacccctgtcccccagaggtgttgggggggggggagtccagctctcagcaggaggttgttaggagctatccatcttttccagtagccttgtgtccagaggctggagcccacagacttccagtgaatgtggtctagcctgtaggaaaccaaagatgggaaatggctcctaaggggccaatttttcttcccctataccacatccccagggctcagctatctgtttccatattgtccgtatggggcctgagcagggctgagggagctggggagtcccaccactattagttttctgtgtgtttgcgtgctgtctgtatcatccttgcactgaaccagaggctgctcacctcccactctctccccgtaggctgatcttatcctgtgccaacccactcctgctttgtctccctggacatggattttagttcagtagtttgtatcccaacacatggtttttgtcttcgtgtaaataaacttatttgtggcagtgctttctgggaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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