2024-11-22 05:29:30, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS XR_007077956 2933 bp RNA linear PRI 26-AUG-2024 DEFINITION PREDICTED: Homo sapiens uncharacterized lncRNA (LOC105375539), transcript variant X1, ncRNA. ACCESSION XR_007077956 VERSION XR_007077956.1 DBLINK BioProject: PRJNA807723 KEYWORDS RefSeq. SOURCE Homo sapiens (human) ORGANISM Homo sapiens Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_060931) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Updated annotation Annotation Name :: GCF_009914755.1-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; RefSeqFE; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/23/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2933 /organism="Homo sapiens" /mol_type="transcribed RNA" /isolate="CHM13" /db_xref="taxon:9606" /chromosome="7" /sex="female" /cell_line="CHM13htert" /tissue_type="hydatidiform mole" /note="haploid cell line" gene 1..2933 /gene="LOC105375539" /note="uncharacterized LOC105375539; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 ESTs, 1 long SRA read, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns" /db_xref="GeneID:105375539" ncRNA 1..2933 /ncRNA_class="lncRNA" /gene="LOC105375539" /product="uncharacterized lncRNA, transcript variant X1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:105375539" ORIGIN
aggttctcttttcttgacttttcccaaatctcagtttcttcttcctcaagtatataaagcaaactcctgtgactctaccttcttcactatgccattttcaacaatcttgaccccaaaataaaattccctgccctgaataaagaagacccaagctatgaaatcacaaaaacttcctctatcccggtagcttacagcatctggtgaagtcggtaatttctcaaaaaaaaaataaaacagggaccaaccctagacagacagagatatgcgacctttaagacaaagaactcaaaatcgtgctttgaggaaactcaatgaaattcaagataaacaaacatgtcccccaaaatgacagtcaatgttacgataaaaataaagattagtaaaagactgaccagataatgagatagccttatatttccaaggtcatcttgaccttcaagaaggggtcaaatatgcattaacaagtgaaaaataggaatataaaaagtaggatcatttgcaaggcaatacacagtatctaatgtggaaagtaacgacggatataattaagaccagcaaaaggcctgctatgtgaaatgagtaacttgcacaaggcacatctgctgatctgagcagcggagagggaagagattattctggaagaggcagaggagtggtgtgagataaggacacactggtgcaaaatagtatcattagcaaacagaacctgccgggggactgtggcctatatgacttttctttccactgtcctctgtgagagctcaaatgcaccattttctgttccaaggatttgctcccgcagccctcactccaccccagttagaagctgctggtatttattcctctgcagtctcccatggacaaactcccactccttcttcgtggagcatggtctagagcagaggtcatctctccctccctccaaatcccacagtaattggcatgagcctctctcatagcttgctcacgtgccacctaattctgcaccttttcatttcaactagattgagagttaggtgtggatcatgaaccttaaacaacaccttcatcaacaggatgtgtaaatgactgctttcactgttctatcgtgaacagaagaaatacaccattaaaatgattgtttaaattaatttaaccacaaaaactttcccaaatgctgtcaacaatgcaaccgcaaaagaattactctcctaaattgtgagattgtagaatgaaacaagaagcaaagaaaattatgtcaaatattggagaggagcctcagaatttgaatccctcttctacaaatatcatttgacatgatgcctctctctacctgagacacagaatggcacctgtgccccatacccactggagactgtggaaatctggagggagcaaccttggtgattctgccccaagagaagggattctctggagctctggacaacatcctgggactaagatggacagtgggagtattgcagcttggagaggataatatttaagccgctcctctgtctgctgggcatgttctctaggatgtgtcaacagctccgccaacacaaagcaccaaaaggtgagctcattgtctttcctgcaagtcagagtcccctgtgccatccccattgatgccccagcctcctccatccccccagtcacacgtgcccaatggggctgtcccatcacatgggttccctcacgagcggcacctcatgcccctcttctgggaccacttcccatctttgttaactataattcagaaaggataccttggtgacaaactcaccgtgttttttctttctctatctataaatatatttacctcaatctcaatatttaatgaatgagaattataattctgacttgatgcttatttttaatctcctttcttgactttcactgttcctttcagtctattctgctgggagatagttatcttttgggctacttttaaaatcttctctttgtcatttgtgttccgcaatttcaccataacatatgtattcatctacttcatattcatttaacttgttgaaacagaggatttaggtcctgaaacacgtcttgaaaattctcagctaatgtctcataattatcacctatcattctctctactttctctttgtgacacttcaatcatgtgtaagaaaaatgggaagttccaacaaaatattatatatacactaatacactagaacccacaagtgttttattccttatcccttaccttttcttgtttcctgtttaattttctgtgctgcattctaggtaacttcttcagatctgtctttgacctcctgtaacaatctcttttgaagcatgtcatcttttcttcatttccattttgttttcaatgataatcttaatcgttagtgtattctctttgattattttttaatgtttccttgattatttctgacagtcttctttttcatgttcacatatcaattcgcttttgtattcctttaaatatagctctttaacttttatatctttttatggcaaaattccttgtcttcatacatttcaattgcttactgtttctactcacttttcttcattggttcttgctttagttgtcttaatagtgggaatatatttacctgacattaatctgtgggatttcagagagtcctgcattgagagtgcagaacgtccagtccatagcttttccagctgtctccagtcttatcccaaatgcacggggcaaagaattgtctgctgcactctgagttgccaaacacactcctgggtttggttcctgggatcagaacacgctctcaggacagtcacaatgttccctccagaacacagttctcatttttgttatttttcatgacaccttctccagaaattagcacctataaggctgtgtagtcatgactttccctacctgttcttccaagaaaaatttatataaatacattttcaataaaaaaactccaaagtctaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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