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Previous release (v1)
2024-11-21 22:28:44, GGRNA.v2 : RefSeq release 226 (Sep, 2024)
LOCUS NM_001413740 5366 bp mRNA linear PRI 11-APR-2024
DEFINITION Homo sapiens polyhomeotic homolog 1 (PHC1), transcript variant 4,
mRNA.
ACCESSION NM_001413740 XM_005253334
VERSION NM_001413740.1
KEYWORDS RefSeq.
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 5366)
AUTHORS Chen,L., Tong,Q., Chen,X., Jiang,P., Yu,H., Zhao,Q., Sun,L.,
Liu,C., Gu,B., Zheng,Y., Fei,L., Jiang,X., Li,W., Volpe,G.,
Abdul,M.M., Guo,G., Zhang,J., Qian,P., Sun,Q., Neculai,D.,
Esteban,M.A., Li,C., Wen,F. and Ji,J.
TITLE PHC1 maintains pluripotency by organizing genome-wide chromatin
interactions of the Nanog locus
JOURNAL Nat Commun 12 (1), 2829 (2021)
PUBMED 33990559
REMARK GeneRIF: PHC1 maintains pluripotency by organizing genome-wide
chromatin interactions of the Nanog locus.
Publication Status: Online-Only
REFERENCE 2 (bases 1 to 5366)
AUTHORS Luck,K., Kim,D.K., Lambourne,L., Spirohn,K., Begg,B.E., Bian,W.,
Brignall,R., Cafarelli,T., Campos-Laborie,F.J., Charloteaux,B.,
Choi,D., Cote,A.G., Daley,M., Deimling,S., Desbuleux,A., Dricot,A.,
Gebbia,M., Hardy,M.F., Kishore,N., Knapp,J.J., Kovacs,I.A.,
Lemmens,I., Mee,M.W., Mellor,J.C., Pollis,C., Pons,C.,
Richardson,A.D., Schlabach,S., Teeking,B., Yadav,A., Babor,M.,
Balcha,D., Basha,O., Bowman-Colin,C., Chin,S.F., Choi,S.G.,
Colabella,C., Coppin,G., D'Amata,C., De Ridder,D., De Rouck,S.,
Duran-Frigola,M., Ennajdaoui,H., Goebels,F., Goehring,L., Gopal,A.,
Haddad,G., Hatchi,E., Helmy,M., Jacob,Y., Kassa,Y., Landini,S.,
Li,R., van Lieshout,N., MacWilliams,A., Markey,D., Paulson,J.N.,
Rangarajan,S., Rasla,J., Rayhan,A., Rolland,T., San-Miguel,A.,
Shen,Y., Sheykhkarimli,D., Sheynkman,G.M., Simonovsky,E., Tasan,M.,
Tejeda,A., Tropepe,V., Twizere,J.C., Wang,Y., Weatheritt,R.J.,
Weile,J., Xia,Y., Yang,X., Yeger-Lotem,E., Zhong,Q., Aloy,P.,
Bader,G.D., De Las Rivas,J., Gaudet,S., Hao,T., Rak,J.,
Tavernier,J., Hill,D.E., Vidal,M., Roth,F.P. and Calderwood,M.A.
TITLE A reference map of the human binary protein interactome
JOURNAL Nature 580 (7803), 402-408 (2020)
PUBMED 32296183
REFERENCE 3 (bases 1 to 5366)
AUTHORS Huttlin,E.L., Bruckner,R.J., Paulo,J.A., Cannon,J.R., Ting,L.,
Baltier,K., Colby,G., Gebreab,F., Gygi,M.P., Parzen,H., Szpyt,J.,
Tam,S., Zarraga,G., Pontano-Vaites,L., Swarup,S., White,A.E.,
Schweppe,D.K., Rad,R., Erickson,B.K., Obar,R.A., Guruharsha,K.G.,
Li,K., Artavanis-Tsakonas,S., Gygi,S.P. and Harper,J.W.
TITLE Architecture of the human interactome defines protein communities
and disease networks
JOURNAL Nature 545 (7655), 505-509 (2017)
PUBMED 28514442
REFERENCE 4 (bases 1 to 5366)
AUTHORS Hauri,S., Comoglio,F., Seimiya,M., Gerstung,M., Glatter,T.,
Hansen,K., Aebersold,R., Paro,R., Gstaiger,M. and Beisel,C.
TITLE A High-Density Map for Navigating the Human Polycomb Complexome
JOURNAL Cell Rep 17 (2), 583-595 (2016)
PUBMED 27705803
REFERENCE 5 (bases 1 to 5366)
AUTHORS Willer,C.J., Schmidt,E.M., Sengupta,S., Peloso,G.M., Gustafsson,S.,
Kanoni,S., Ganna,A., Chen,J., Buchkovich,M.L., Mora,S.,
Beckmann,J.S., Bragg-Gresham,J.L., Chang,H.Y., Demirkan,A., Den
Hertog,H.M., Do,R., Donnelly,L.A., Ehret,G.B., Esko,T.,
Feitosa,M.F., Ferreira,T., Fischer,K., Fontanillas,P., Fraser,R.M.,
Freitag,D.F., Gurdasani,D., Heikkila,K., Hypponen,E., Isaacs,A.,
Jackson,A.U., Johansson,A., Johnson,T., Kaakinen,M., Kettunen,J.,
Kleber,M.E., Li,X., Luan,J., Lyytikainen,L.P., Magnusson,P.K.E.,
Mangino,M., Mihailov,E., Montasser,M.E., Muller-Nurasyid,M.,
Nolte,I.M., O'Connell,J.R., Palmer,C.D., Perola,M., Petersen,A.K.,
Sanna,S., Saxena,R., Service,S.K., Shah,S., Shungin,D., Sidore,C.,
Song,C., Strawbridge,R.J., Surakka,I., Tanaka,T., Teslovich,T.M.,
Thorleifsson,G., Van den Herik,E.G., Voight,B.F., Volcik,K.A.,
Waite,L.L., Wong,A., Wu,Y., Zhang,W., Absher,D., Asiki,G.,
Barroso,I., Been,L.F., Bolton,J.L., Bonnycastle,L.L., Brambilla,P.,
Burnett,M.S., Cesana,G., Dimitriou,M., Doney,A.S.F., Doring,A.,
Elliott,P., Epstein,S.E., Ingi Eyjolfsson,G., Gigante,B.,
Goodarzi,M.O., Grallert,H., Gravito,M.L., Groves,C.J., Hallmans,G.,
Hartikainen,A.L., Hayward,C., Hernandez,D., Hicks,A.A., Holm,H.,
Hung,Y.J., Illig,T., Jones,M.R., Kaleebu,P., Kastelein,J.J.P.,
Khaw,K.T., Kim,E., Klopp,N., Komulainen,P., Kumari,M.,
Langenberg,C., Lehtimaki,T., Lin,S.Y., Lindstrom,J., Loos,R.J.F.,
Mach,F., McArdle,W.L., Meisinger,C., Mitchell,B.D., Muller,G.,
Nagaraja,R., Narisu,N., Nieminen,T.V.M., Nsubuga,R.N., Olafsson,I.,
Ong,K.K., Palotie,A., Papamarkou,T., Pomilla,C., Pouta,A.,
Rader,D.J., Reilly,M.P., Ridker,P.M., Rivadeneira,F., Rudan,I.,
Ruokonen,A., Samani,N., Scharnagl,H., Seeley,J., Silander,K.,
Stancakova,A., Stirrups,K., Swift,A.J., Tiret,L.,
Uitterlinden,A.G., van Pelt,L.J., Vedantam,S., Wainwright,N.,
Wijmenga,C., Wild,S.H., Willemsen,G., Wilsgaard,T., Wilson,J.F.,
Young,E.H., Zhao,J.H., Adair,L.S., Arveiler,D., Assimes,T.L.,
Bandinelli,S., Bennett,F., Bochud,M., Boehm,B.O., Boomsma,D.I.,
Borecki,I.B., Bornstein,S.R., Bovet,P., Burnier,M., Campbell,H.,
Chakravarti,A., Chambers,J.C., Chen,Y.I., Collins,F.S.,
Cooper,R.S., Danesh,J., Dedoussis,G., de Faire,U., Feranil,A.B.,
Ferrieres,J., Ferrucci,L., Freimer,N.B., Gieger,C., Groop,L.C.,
Gudnason,V., Gyllensten,U., Hamsten,A., Harris,T.B., Hingorani,A.,
Hirschhorn,J.N., Hofman,A., Hovingh,G.K., Hsiung,C.A.,
Humphries,S.E., Hunt,S.C., Hveem,K., Iribarren,C., Jarvelin,M.R.,
Jula,A., Kahonen,M., Kaprio,J., Kesaniemi,A., Kivimaki,M.,
Kooner,J.S., Koudstaal,P.J., Krauss,R.M., Kuh,D., Kuusisto,J.,
Kyvik,K.O., Laakso,M., Lakka,T.A., Lind,L., Lindgren,C.M.,
Martin,N.G., Marz,W., McCarthy,M.I., McKenzie,C.A., Meneton,P.,
Metspalu,A., Moilanen,L., Morris,A.D., Munroe,P.B., Njolstad,I.,
Pedersen,N.L., Power,C., Pramstaller,P.P., Price,J.F., Psaty,B.M.,
Quertermous,T., Rauramaa,R., Saleheen,D., Salomaa,V.,
Sanghera,D.K., Saramies,J., Schwarz,P.E.H., Sheu,W.H.,
Shuldiner,A.R., Siegbahn,A., Spector,T.D., Stefansson,K.,
Strachan,D.P., Tayo,B.O., Tremoli,E., Tuomilehto,J., Uusitupa,M.,
van Duijn,C.M., Vollenweider,P., Wallentin,L., Wareham,N.J.,
Whitfield,J.B., Wolffenbuttel,B.H.R., Ordovas,J.M., Boerwinkle,E.,
Palmer,C.N.A., Thorsteinsdottir,U., Chasman,D.I., Rotter,J.I.,
Franks,P.W., Ripatti,S., Cupples,L.A., Sandhu,M.S., Rich,S.S.,
Boehnke,M., Deloukas,P., Kathiresan,S., Mohlke,K.L., Ingelsson,E.
and Abecasis,G.R.
CONSRTM Global Lipids Genetics Consortium
TITLE Discovery and refinement of loci associated with lipid levels
JOURNAL Nat Genet 45 (11), 1274-1283 (2013)
PUBMED 24097068
REFERENCE 6 (bases 1 to 5366)
AUTHORS Levine,S.S., Weiss,A., Erdjument-Bromage,H., Shao,Z., Tempst,P. and
Kingston,R.E.
TITLE The core of the polycomb repressive complex is compositionally and
functionally conserved in flies and humans
JOURNAL Mol Cell Biol 22 (17), 6070-6078 (2002)
PUBMED 12167701
REFERENCE 7 (bases 1 to 5366)
AUTHORS Ohta,H., Tokimasa,S., Zou,Z., Funaki,S., Kurahashi,H.,
Takahashi,Y., Kimura,M., Matsuoka,R., Horie,M., Hara,J., Shimada,K.
and Takihara,Y.
TITLE Structure and chromosomal localization of the RAE28/HPH1 gene, a
human homologue of the polyhomeotic gene
JOURNAL DNA Seq 11 (1-2), 61-73 (2000)
PUBMED 10902910
REFERENCE 8 (bases 1 to 5366)
AUTHORS Satijn,D.P., Gunster,M.J., van der Vlag,J., Hamer,K.M., Schul,W.,
Alkema,M.J., Saurin,A.J., Freemont,P.S., van Driel,R. and Otte,A.P.
TITLE RING1 is associated with the polycomb group protein complex and
acts as a transcriptional repressor
JOURNAL Mol Cell Biol 17 (7), 4105-4113 (1997)
PUBMED 9199346
REFERENCE 9 (bases 1 to 5366)
AUTHORS Gunster,M.J., Satijn,D.P., Hamer,K.M., den Blaauwen,J.L., de
Bruijn,D., Alkema,M.J., van Lohuizen,M., van Driel,R. and Otte,A.P.
TITLE Identification and characterization of interactions between the
vertebrate polycomb-group protein BMI1 and human homologs of
polyhomeotic
JOURNAL Mol Cell Biol 17 (4), 2326-2335 (1997)
PUBMED 9121482
REFERENCE 10 (bases 1 to 5366)
AUTHORS Verloes,A., Drunat,S., Gressens,P. and Passemard,S.
TITLE Primary Autosomal Recessive Microcephalies and Seckel Syndrome
Spectrum Disorders - RETIRED CHAPTER, FOR HISTORICAL REFERENCE ONLY
JOURNAL (in) Adam MP, Feldman J, Mirzaa GM, Pagon RA, Wallace SE, Bean LJH,
Gripp KW and Amemiya A (Eds.);
GENEREVIEWS(R);
(1993)
PUBMED 20301772
COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The
reference sequence was derived from AC006581.16.
On Nov 8, 2022 this sequence version replaced XM_005253334.4.
Summary: This gene is a homolog of the Drosophila polyhomeotic
gene, which is a member of the Polycomb group of genes. The gene
product is a component of a multimeric protein complex that
contains EDR2 and the vertebrate Polycomb protein BMH1. The gene
product, the EDR2 protein, and the Drosophila polyhomeotic protein
share 2 highly conserved domains, named homology domains I and II.
These domains are involved in protein-protein interactions and may
mediate heterodimerization of the protein encoded by this gene and
the EDR2 protein. [provided by RefSeq, Jul 2008].
Publication Note: This RefSeq record includes a subset of the
publications that are available for this gene. Please see the Gene
record to access additional publications.
##Evidence-Data-START##
Transcript exon combination :: SRR14038197.1173594.1,
SRR14038192.150198.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA1965299, SAMEA1966682
[ECO:0000348]
##Evidence-Data-END##
COMPLETENESS: full length.
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-319 AC006581.16 63466-63784
320-481 AC006581.16 66587-66748
482-592 AC006581.16 68713-68823
593-673 AC006581.16 69942-70022
674-823 AC006581.16 70558-70707
824-955 AC006581.16 71614-71745
956-1448 AC006581.16 79392-79884
1449-2236 AC006581.16 81520-82307
2237-2384 AC006581.16 82822-82969
2385-2596 AC006581.16 83224-83435
2597-2711 AC006581.16 84081-84195
2712-2820 AC006581.16 85813-85921
2821-2971 AC006581.16 86133-86283
2972-3203 AC006581.16 86786-87017
3204-5366 AC006581.16 88262-90424
FEATURES Location/Qualifiers
source 1..5366
/organism="Homo sapiens"
/mol_type="mRNA"
/db_xref="taxon:9606"
/chromosome="12"
/map="12p13.31"
gene 1..5366
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="polyhomeotic homolog 1"
/db_xref="GeneID:1911"
/db_xref="HGNC:HGNC:3182"
/db_xref="MIM:602978"
exon 1..319
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
misc_feature 89..91
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="upstream in-frame stop codon"
exon 320..481
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
CDS 368..3358
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="isoform c is encoded by transcript variant 4; early
development regulator 1 (homolog of polyhomeotic 1); early
development regulatory protein 1; polyhomeotic-like 1"
/codon_start=1
/product="polyhomeotic-like protein 1 isoform c"
/protein_id="NP_001400669.1"
/db_xref="GeneID:1911"
/db_xref="HGNC:HGNC:3182"
/db_xref="MIM:602978"
/translation="
METESEQNSNSTNGSSSSGGSSRPQIAQMSLYERQAVQALQALQRQPNAAQYFHQFMLQQQLSNAQLHSLAAVQQATIAASRQASSPNTSTTQQQTTTTQASINLATTSAAQLISRSQSVSSPSATTLTQSVLLGNTTSPPLNQSQAQMYLRVNRTLGRNVPLASQLILMPNGAVAAVQQEVPSAQSPGVHADADQVQNLAVRNQQASAQGPQMQGSTQKAIPPGASPVSSLSQASSQALAVAQASSGATNQSLNLSQAGGGSGNSIPGSMGPGGGGQAHGGLGQLPSSGMGGGSCPRKGTGVVQPLPAAQTVTVSQGSQTEAESAAAKKAEADGSGQQNVGMNLTRTATPAPSQTLISSATYTQIQPHSLIQQQQQIHLQQKQVVIQQQIAIHHQQQFQHRQSQLLHTATHLQLAQQQQQQQQQQQQQQQPQATTLTAPQPPQVPPTQQVPPSQSQQQAQTLVVQPMLQSSPLSLPPDAAPKPPIPIQSKPPVAPIKPPQLGAAKMSAAQQPPPHIPVQVVGTRQPGTAQAQALGLAQLAAAVPTSRGMPGTVQSGQAHLASSPPSSQAPGALQECPPTLAPGMTLAPVQGTAHVVKGGATTSSPVVAQVPAAFYMQSVHLPGKPQTLAVKRKADSEEERDDVSTLGSMLPAKASPVAESPKVMDEKSSLGEKAESVANVNANTPSSELVALTPAPSVPPPTLAMVSRQMGDSKPPQAIVKPQILTHIIEGFVIQEGAEPFPVGCSQLLKESEKPLQTGLPTGLTENQSGGPLGVDSPSAELDKKANLLKCEYCGKYAPAEQFRGSKRFCSMTCAKRYNVSCSHQFRLKRKKMKEFQEANYARVRRRGPRRSSSDIARAKIQGKCHRGQEDSSRGSDNSSYDEALSPTSPGPLSVRAGHGERDLGNPNTAPPTPELHGINPVFLSSNPSRWSVEEVYEFIASLQGCQEIAEEFRSQEIDGQALLLLKEEHLMSAMNIKLGPALKICAKINVLKET"
misc_feature 368..442
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 977..1066
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1124..1408
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1637..1879
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature <1763..2353
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="large tegument protein UL36; Provisional; Region:
PHA03247"
/db_xref="CDD:223021"
misc_feature 2009..2110
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2249..2359
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2276..2278
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:21406692; propagated from
UniProtKB/Swiss-Prot (P78364.3); phosphorylation site"
misc_feature 2825..3148
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="Unstructured region on Polyhomeotic-like protein 1
and 2; Region: PHC2_SAM_assoc; pfam16616"
/db_xref="CDD:465202"
misc_feature 2885..3127
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="propagated from UniProtKB/Swiss-Prot (P78364.3);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 3035..3037
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="Phosphoserine.
/evidence=ECO:0007744|PubMed:19690332; propagated from
UniProtKB/Swiss-Prot (P78364.3); phosphorylation site"
misc_feature 3107..3109
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="Phosphothreonine.
/evidence=ECO:0007744|PubMed:19690332; propagated from
UniProtKB/Swiss-Prot (P78364.3); phosphorylation site"
misc_feature 3146..3352
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="SAM domain of Ph (polyhomeotic) proteins of
Polycomb group; Region: SAM_Ph1,2,3; cd09577"
/db_xref="CDD:188976"
misc_feature order(3200..3205,3305..3310,3317..3322,3329..3331)
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="oligomer interface EH [polypeptide binding]; other
site"
/db_xref="CDD:188976"
misc_feature order(3233..3247,3251..3256,3263..3268,3278..3280,
3293..3295)
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="oligomer interface ML [polypeptide binding]; other
site"
/db_xref="CDD:188976"
exon 482..592
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 593..673
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 674..823
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 824..955
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 956..1448
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 1449..2236
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2237..2384
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2385..2596
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2597..2711
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2712..2820
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2821..2971
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 2972..3203
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
exon 3204..5366
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/inference="alignment:Splign:2.1.0"
regulatory 5345..5350
/regulatory_class="polyA_signal_sequence"
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="hexamer: AAGAAA"
polyA_site 5366
/gene="PHC1"
/gene_synonym="EDR1; HPH1; MCPH11; RAE28"
/note="major polyA site"
ORIGIN
agcccggcccgcagcccctggcctgcggcccccaccttctcggccgggcaggaagtgacaggcccggagcgagccccggaggcctggctgagccgcggccgggcccgcacccggagcggcgggaggggcggggagccgcggtcgcgccgggcgcctcccaccccgccctcggcgcccccgcccctccaggaaggggaggaggcgaggggagcccgccgcggaggccgagcgagcccccagcccagcctggcgactggggaccccggcacatgaggtggacgcccccggggaagacttgggtgcacagccaggcgagaaggtcttgagtcagacagagcaccagccttggggaccctggaccactatcatggagactgagagcgagcagaactccaattccaccaatgggagttctagctcagggggcagctctcggccccagatagctcaaatgtcactttatgaacgacaagcagtgcaggctctgcaagcactgcagcggcagcccaatgcagctcagtatttccaccagttcatgctccagcagcagctcagtaatgcccagctgcatagcctggctgccgtccagcaggccacaattgctgccagtcggcaggccagctccccaaacaccagcactacacagcagcagactaccaccacccaggcctcgatcaatctggccaccacatcggccgcccagctcatcagccgatcccagagtgtgagctctcccagtgctaccaccttgacccaatctgtgctactggggaacaccacctccccacccctcaaccagtctcaggcccagatgtatctacgggtaaaccgaaccctgggtcggaatgtgcctctagcctcccaactcatcctgatgcctaatggggcggtggctgcagtccagcaggaggtgccatctgctcagtctcctggagttcatgcagatgcagatcaggttcagaacttggcagtaaggaatcaacaggcctcagctcaaggacctcagatgcaaggctccactcagaaggccattcctccaggagcctcccctgtctctagcctctcccaggcctctagccaggccctagcggtggcacaggcttcctctggggccacaaaccagtccctcaaccttagtcaagctggtggaggcagtgggaatagcatcccagggtccatgggtccaggtggaggtgggcaggcacatggtggtttgggtcagttgccttcctcaggaatgggtggtgggagctgtcccagaaagggtacaggagtggtgcagcccttgcctgcagcccaaacagtgactgtgagccagggcagccagacagaggcagaaagtgcagcagccaagaaggcagaagcagatgggagtggccagcagaatgtgggcatgaacctgacacggacagccacacctgcgcccagccagacacttattagctcagccacctacacacagatccagccccattcactgattcagcaacagcaacagatccacctccagcagaaacaggtggtgatccagcagcagattgccatccaccaccagcagcagttccagcaccggcagtcccagctccttcacacagctacacacctccagttggcgcagcagcagcagcagcaacaacagcaacagcagcaacagcagcagccgcaagccaccaccctcactgcccctcagccaccacaggtcccacctactcagcaggtcccaccttcccagtcccagcagcaagcccaaaccctggtcgttcagcccatgcttcagtcttcacccttgtctcttccacctgatgcagcccctaagccaccaattcccatccaatccaaaccacctgtagcacctatcaagccgcctcagttaggggccgctaagatgtcagctgcccagcaaccaccaccccatatccctgtgcaagttgtaggcactcgacagccaggtacagcccaggcacaggctttggggttggcacagctggcagctgctgtacctacttcccgggggatgccaggtacagtgcagtctggtcaggcccatttggcctcctcgccaccttcatcccaggctcctggtgcactgcaggagtgccctcccacattggcccctgggatgacccttgctcctgtgcaggggacagcacatgtggtaaagggtggggctaccacctcctcacctgttgtagcccaggtccctgctgccttctatatgcagtctgtgcacttgccgggtaaaccccagacattggctgtcaaacgcaaggctgactctgaggaggagagagatgatgtctccacattgggttcaatgcttcctgccaaggcatctccagtagcagaaagcccaaaagtcatggacgagaagagcagtcttggagaaaaagctgaatcagtggctaatgtgaatgctaatactccaagcagtgaactagtagccttgacccccgccccttcagtaccgcctcctacactagccatggtgtctagacaaatgggtgactcaaaacccccacaggccatcgtgaagccccagattctcacccacatcattgaaggctttgttatccaggaaggagcagaacctttcccggtgggttgttctcagttactgaaggagtctgagaagccactacagactggccttccgacagggctgactgagaatcagtcaggtggccctttgggagtggacagcccatctgctgagttagataagaaggcgaatctcctgaagtgcgagtactgtgggaagtacgcccccgcagagcagtttcgtggctctaagaggttctgctccatgacttgcgctaagaggtacaatgtgagctgtagccatcagttccggctgaagaggaaaaaaatgaaagagtttcaagaagccaactatgctcgcgttcgcaggcgtggaccccgccgcagctcctctgacattgcccgtgccaagattcagggcaagtgccaccggggtcaagaagactctagccggggttcagataattccagttatgatgaagcactctctccaacatctcctgggcctttatcagtaagagctgggcatggagaacgtgacctggggaatcccaatacagctccacctacaccggaattacatggcatcaaccctgtgttcctgtccagtaatcccagccgttggagtgtagaggaggtgtacgagtttattgcttctctccaaggctgccaagagattgcagaggaatttcgctcacaggagattgatggacaggcccttttattacttaaagaagaacatcttatgagtgccatgaacatcaagctgggccctgccctcaagatctgcgccaagataaatgtcctcaaggagacctaaggtggccctcttgcacaaaccagcctaaggcagacactctccactgtccaggttataacctggtaccagcagactttgcagggaagaaagagttgttccaatcatgtaaccttctgtaggggattactgagacagggaagagaagtgcaagaattggttgctggtgctacatggcggcagctttgacattttctctgggttctactttattttttaaaatctttacagttctcaccatttcacgtaccttaatccaatctttataaaagaggcagtctagagaactaggactgctcagccttatcctggagtggagcatttagcccaggtcttaattctccaagaggaggaatacatagtatggtaaggcaaggaactgggtggaatgtcaggttgcctgcccaatgggagaggtagggtttttctagcttgtgtgacagaagtagcaaaatctggtcctcccccctcccagtgtagctgtggctcagagttttttctttttgttgtcacttactcccttgtgattgaattttttctcctgcatccatggcaggatccccagccagtatagagacttggttggcatcttctgctgcagggactaaaagtatttgactggggcacatgtggctgttgtcattctttctgcatcccactgttcccctccaatttatgttattttctaccctgtttttcagttccatctctgctctgtcctatagctttataaaaccagagtgtgtggggctgaggtcaggagtataagtacctgccttaggcactattccttatataacaaaaatattaaatatttttttcctcagtaaaaggatgaaaattggtttcagttgtcttactctattccagtctttgcccactttcacacaaatgacaaggccaatatgttttgtttgttttttaatcattaagagtttttgtacaaaaggtgatggttttttttcttcattttaaaacaccagggtgtgggggagggatgcaaacaaataacaaaaaagatgcttttgtaacattattttccctgtttagaaagaaaaaaatcactccaatagtattgaaaagtccaaagatgaaatagtttcattttcttttcctaaggcttataaaaggccccctgcctgttgattccatccctcttttgtgtccagtggagccatgttactcttcagtggcccaggggttcactattaaagaaagatcagtccaggtttctgggcacatggcctaaacaggaagatggaagcatcagaggattaaaaacctttccccacagaaatgtgggcaagaagacacttccctgagccagcagaagggacaggtgcagcagcattccacacccagcgcagaggacagcagagccctcgatgtcccacttctgcttccgttccctttctagaagattgaaaaaaaggtcaaaaccacatgcctgtggagaaagtgcgacatgtttagaaatactggtagggaaccaggagtaagaaaagctttaccagcttttactacaaatggatgaaagacatcaggatcccaccaccgcaaggtaaagtgacttcccttttctggaacccctgtggcacaggagtaccaattttcctttccaacgaactggatttctggataggcattttggctgtatgtggacagataagaccacagtccttagcccaatcccagctatacagtcaccccaatttccacaaatgatgtgatggtaccgtataatcctgtaattgggaaatttcacatttttcctgtcctaatctcagaggtgggagaagcaagtctagaacatctccaggctcagactaaacgagagtacttggactgcaaccaagtaatcactgcaaagtagttccaagcagcaagaaataccagattctcatggaggctactatagggtacagaataacaacatgaaagcaatcaaccctgtataaataatgtttcttggcattttttttttaattaaagaaatccagtgtctcaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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