2024-09-29 11:21:14, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_046907775 2306 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus claudin domain containing 1 (CLDND1), transcript variant X2, mRNA. ACCESSION XM_046907775 VERSION XM_046907775.1 DBLINK BioProject: PRJNA698614 KEYWORDS RefSeq; includes ab initio. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052573.1) annotated using gene prediction method: Gnomon, supported by mRNA and EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## ab initio :: 2% of CDS bases ##RefSeq-Attributes-END## FEATURES Location/Qualifiers source 1..2306 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="1" /sex="female" /tissue_type="blood" /geo_loc_name="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..2306 /gene="CLDND1" /note="claudin domain containing 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 mRNAs, 4 ESTs, 7811 long SRA reads, 17 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns" /db_xref="CGNC:66314" /db_xref="GeneID:418357" misc_feature 1 /gene="CLDND1" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 572..1327 /gene="CLDND1" /codon_start=1 /product="claudin domain-containing protein 1 isoform X1" /protein_id="XP_046763731.1" /db_xref="GeneID:418357" /db_xref="CGNC:66314" /translation="
MMDNRFATALVIACVLSLISTIYMAASLGTDFWYEYHTLSPAENITEAGRSIWEEFVSEEADEKTYTDALFRCNGTVGLWRRCITVPKNSHWYSPPETDMTTNCISFSLSDQFMEKYVEPGNHNSGTDLNRTYLWRLQFLLPFVSLGLMCFGALIGLCACACRSLYPAIATGVLHFLAGLCTLGLVGCYVAGIELLHKKLPLPGDVRGEFGWSFCLACVSAPLQFMAAALFIWAARTNRKEFTLLKAYRVA"
misc_feature 623..1267 /gene="CLDND1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" polyA_site 2306 /gene="CLDND1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ggcgcggaagtggtgcgcggggctggggatggaggtggttcgctgcggtgagtattgcgctccggggcggttgcggcccgcggaggggcggtcccggaggaaggggcggttcgtgttgagggctcggggtctgacggcctgcccggccctcggcccagcggtggggcgaggccgacggggcgttggcagctcctcgggtggcggcgcggtacggggcgcgggcctgtcctgccggttgtgtgccgcgcctgctgcggatgctgctgtggtcctgggagttcttgccgtcagatttctccctacgctcttcgtcgttttctcgttacgctgactgacaccagcgggttgctgctatcgtggttgcaagctctttggtttcttgtctccttccaggctgctgcttgtgcatcgatggcattgctggagcggtctgaatggagcagttagggccagcagggagttggcggtgtgtgcttctggcttactgcaggacgccggtagcacggtgtctctgaagtcacctgcaaccactggagctgcgtatgctgctggatctgaggagctctaagcaatgatggataaccgttttgctacagcactggtaattgcatgtgttctcagcctcatctccaccatatatatggcagcttcattgggcactgatttttggtatgagtatcacactctgtcccctgctgagaacattactgaagctggcaggagcatctgggaggaatttgtcagtgaagaggcagatgagaagacctacacagatgcactattccggtgcaatggcacagttgggttgtggaggaggtgcatcactgtacccaaaaactctcactggtacagcccaccagaaactgatatgactacaaactgcatcagtttttccctctctgatcagtttatggaaaagtatgtagagcctggaaatcacaacagtggcaccgatttgaatcggacttatctctggcgattgcagtttctcctgccatttgtcagccttggtctcatgtgctttggagctctgattgggctctgtgcatgtgcctgtcgcagcctataccctgccattgccactggagtcctccattttctcgcaggactttgtacactgggcctggttggctgctatgtagctgggattgagctgcttcataagaagctgcccctacctggtgacgtgaggggtgaatttggctggtccttctgcctagcctgtgtctcagcacctttgcagtttatggcagctgctcttttcatctgggcagctcgaaccaacagaaaggaattcactctcttgaaagcataccgtgtagcatagtaagtgttgctacccaagtattaggtttccatgtaacagacttccctcaacccttattacttttattcttcttttagacagaaatttggccttgtactgcttgtttcttgccagttgagacagtatagcctgcaggccctgaagacaaagacctttgggctaaattaccaaactttgccagaagtctgcagaacttatattaaaaaccatttttagaaactatatatattttaagctttctttggttgattttctttgaatatccccttagttaaatgtgtatctcttctgaattttattaccttgtcagcctggaggaaatagggaaggcattgtgatgtggaagtgagataaggaaagatgcagttaggcgagaatgggaactggggagtgcaaataatcacaagttgggcactctccataggccatagagcagacaagagacacgtggaaacagaagaacctgtgttatggaaatactgtagttaaatcagtcctgtagcttagctttaggtctcttattcttgctagtttgttacttcctatagcttctgcaaaaactgatgtaggcagagcagctagctctgggagtggttgcacagcacactaccctaaacagagaatctgtgctgcttttgctgtggaagagaagtttccctatatggaactttgtgctactctagatatgctgcttccaggtacctgcactacatgtgtttgtgcactctaatcttaacttgtgattttgcttgctgtgaaatagggctttcctctctcctgttatactgaaggcaaaccttcacaacttttttcactttgaatttgatttagtgtatgtgtgtatatgtacataatataaacttttgtaaaactcttattttacctatgtagcacacaacaggctcttttttaaaaggtgctgctcaattcccaccttgccccaaatctattgtttaagtgaaataaaacagtcctcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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