2024-09-29 11:16:01, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS XM_046903304 4942 bp mRNA linear VRT 01-MAR-2022 DEFINITION PREDICTED: Gallus gallus claudin-16-like (LOC769267), transcript variant X1, mRNA. ACCESSION XM_046903304 VERSION XM_046903304.1 DBLINK BioProject: PRJNA698609 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_052552.1) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI Annotation Status :: Full annotation Annotation Name :: Gallus gallus Annotation Release 106 Annotation Version :: 106 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 9.0 Annotation Method :: Best-placed RefSeq; Gnomon Features Annotated :: Gene; mRNA; CDS; ncRNA ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4942 /organism="Gallus gallus" /mol_type="mRNA" /isolate="bGalGal1" /db_xref="taxon:9031" /chromosome="21" /sex="female" /tissue_type="blood" /geo_loc_name="USA: Fayetteville" /lat_lon="36.0822 N 94.1719 W" /collection_date="20-May-2019" /collected_by="Nick Anthony" gene 1..4942 /gene="LOC769267" /note="Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 long SRA reads, 8 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="CGNC:55121" /db_xref="GeneID:769267" misc_feature 1 /gene="LOC769267" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 4107..4799 /gene="LOC769267" /codon_start=1 /product="claudin-16-like" /protein_id="XP_046759260.1" /db_xref="GeneID:769267" /db_xref="CGNC:55121" /translation="
MSALLQMTAFGLTLLSALFLLLATCTDCWMVNADDSLEVSHKCRGLWRECVTNTQDGVRTCDQYDSILADHPVKIVVTRTLLITADLLVGLALATLLLGLDCTKFLKEEPHVKLKMCYGAGIILGIGSILGLVGSVWYAVDVYVERAMLVSHNLFLGVHYDFGWSCWLGMAGSTGCFVASVLLTCCLHAHTGQSVLSRAAPSHIKSCRDIPAVDNSEGAVASCRLQPNEG"
misc_feature <4464..4655 /gene="LOC769267" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN
ggcttctgtaaggcaggaaggactaacagccctctctctcttttgcattgcagaccccatgtaaaaatatcgtcagccatcaggggagagcagtgcttgtagtgtctgcaccgtcagggagattggtgcttggtttcccctcaaaacacacctcaaagctactgcagtgaggattgggaaggaaaatcgtgcttaaaaatatatgtatctgaagtgtgtttttatataaagagcgcagagttgtgtagaagaatgtttttattcttttagtgtaaacctgcattaacttttctgtgtgatgtacgccgtgggagcagcactgtttgggattcctatttttgtgggtttttttcagatagtttgtactaaaagttgtgactcaatggtattaaaatatttctgattatgggtgtccttctgaagtcatctctttgccctctattcccaacctgagcctcttcccattgcttccatgcctgtgccttagggctgaggccttatccctgggctggggagtgggtctggggagggggataaggttggtggtttgggcagggggtttgggctgaaggtgtctgcctgctgctggctcctaggctagaaccacctcctctcagcctcttgggaggcacttgaaataagtgtggctcctgagagcggcccaccaggccttgagccagtgtgaaacagaactttgcaggtatgccagggcaggtgctattgctcaaaccgtgcttaaaggttgcttaatttaagcctaaagcacctaaatcccatctgactggcctggcactgcacccctgtagccacagcctgggccctcagcaaggcccttcccagactgcggcctagcgtgggtctgtgccagggctgcggcctagtgtgggccctcccagccaggccccatcacctcccattcctcagctcagccctacaacaaagcactcattgcagtcaccccgctgcttgtgaaggagacctgcagggtttaatctcttttccaagaactcggggctgggctgctccttgctgtgctaattgagttgatttctgcttttgtggcacctgcttttccttggcactgctggaggcccaggggttttgcccagctcccctatcttcctgcagcccctggctcacagatatgttctattctcccccaaaactctgattttggggactcctgtgacactgccacaggctcagtcccatggctctctgggatcagccgcccaggctgcaagaacataagagggggaaaaatagctgagctgcagaagcaattacatgtttggggacacaaaggcccccactgtcctccagacaatcccttgtgtgttttgcccatggcagagtggaattaaatatgggaacaggctgccaggcttgggatggcctgcagccttgcatgcaatgcgtgggatccactgccatccaaatcacgaaaaagagcactttagtggctttctgtccccacaccctccctctttctatcttacaaaaccattatgatgcagatctaatcttcatctcatcttcactgaccaaggaaatattcttaattattgaaagactgatatatttacccctctacctgtatcttttcaatgcccaaaacatttcaactgagaatcagacaggtgggcgcatttcatatatagtaaacccacagattagatgagcagaaaataaaatcaaaattcttttatgtatcaccaatgcacacgtgtagagaacataccagaatttcatccattttgtggctatctaagtattgtaaatagaaaatttctgagatcttagttggaaaatgaaggtatacaaaccctactggaagatttcagccctaattcaccactacatgcacaggtatgctcaagaaaagcgttgccatgagccaaaataccatttgaaacaggataatctgaaataaagccacagcaattactcatgtcaggaacctgggtgcctctgcagggctgaatctcaagaatttgctattaaggattgtgcagcactctacaaaacccctgtagttcagtaccgcagaggattatttagaggggaaaagataataataaaagtacctctcttaaatatatcccatgatttggaaatacatacatggagtgttgtttcccattcacccatgagatgagagcatagatacggccgacaaccatggggcactgcttatgctggagatgttcagaggatgctgcaacaagatgctgtgcaagaaagcggttttcctgggtagtaaggaacaaagctgaagtatttgggcagcacgaggcagctgaggtgctgctttcgagggtcagcaaaaagcccacaaaaatgcctctggccaagcagccacgttgtctgagctggaaaccaccagagaggagtgactgtgcataatggcctgggagcccccacacagccaggaaatggacgagttttacaggctgcattaagtgcccctgtgaggctgtgtcctttacagccttttgctgcatccctcccttgaaagctttgaattctgggggtgccagagagatgatcacggccctctttgaacagaacccccaggatctgtgaggggtcccatcaaggtggcttgttttgctgcctctgggttgacctctctgccagtttgaaacctatgagatgtctctgggagatgggaaatgctgggccatttcacagctgggaacctgatggataacactaggggttttgaattaccctccctgcaacaaactgcatttaacttcttcctcctgccacctccgtccgtctgcctcctgcgccagtgcattggagccaacacacctcaggccactcacccatgagcgctgattaaaaggtgtgattaaagaacaggggacgtttgcccagcacacagagtcccccacctggggagtgtttctccacatctcccgcagccccagctggttcccacaggtgtcaagatgtgatgttttttggaggccgatctctgtttccagccaattaccatttaaccacgaggctcccctgtcgtgccttagtacacaaagcgctctgaaacaccctggagaagcattaaatagcccagcacagatgtgggctcacagtgctctgtgggcatttaatttccgttgggcacctctacatcccattcaggtgggactgaatcccaccctgggacttcagatgtctgcaccccagcgaggttgagcctggatgctgtgatgaagtggttacagctccaggtgctaaagcatacggcaatgccaagatttgggctgcaaaacgcaccgaagtaggagtcctctccagtggaacatatgagatatggtgtcctctgctcataccttctgtacaatcgctttctctgcgaagtcccttcaactctggccgtgatggaaatcagatggttccatcccctttgctctctggaaatgctcagcagcacccaaaggcgcccacattgagccacggcagcgctctctctttgggcttgctgcttgagaatgggacacctccatgggacactcccacgtattccagattgggtgttttgacgcttcataacttacaaagcagttacaaggaaaggtgggtaatctttttgctgaatgatgaaaacatcaaggaagccttaggatatcaggagatacgtacgtgctcaaataatggagtctgactacagctgctctttgacaatagtttccaagcagctcttgattcccagagggacattactgagggttatagagttatagaatcatctaggctggaaaatgccttcaggatcacccagtgcgagcattttcacctactaagtcctgtcactaagccctgtctcttagtgccatgtccacatgtgtctgaaatgcctccagggctggggactccagctctcccctgggcagccagttccagcgcttgaccacactccctataaagaaatccttcctgacattccatctagccctcctctgtcacaactggagaccatctgagctgcttttagggatccagagcacgttctggcccagacagaggacaacgtaccggggaggtggtcagagcagaggcgggaggcatctctgtgttcccttgcaggtgtccccatgagtgcgctcttgcagatgacagcctttggtctcactctcctctcggccctattcctccttcttgccacatgcactgactgctggatggtgaatgctgatgacagcttggaggtgagccacaaatgccggggcctttggagggaatgtgtcaccaacacgcaggatggagtgaggacctgtgaccagtatgactccattttggcagaccatccagtgaagattgtggtgacacgaacgctgctgatcacagcggacctcctggtgggcctggctttggctactttgctccttgggctcgactgcaccaagttcctcaaggaagaacctcatgtcaaactgaagatgtgctacggggctggcatcatcctcggcatcgggagtatcctgggtctcgtgggctccgtgtggtatgcagtggatgtctacgtggagagggccatgctggtgtcccacaatctcttcctgggggtccactatgactttgggtggtcctgctggctggggatggctggctcaacgggctgcttcgtggcatctgtcctgctcacctgctgcctccatgcccacacaggtcagtctgtgttgtcccgggctgccccatcccacatcaagtcctgcagggatatacctgcggtggacaactcggagggtgcagttgcttcttgcaggctgcagccaaatgaagggtagttggcatttgcaccctggctgttgggtgggaagggggagggctgcatcatgccaagcagagccccataggttctgtgggggcacgggggagtgcagaaatgctccacccccacccagggcatctcgaggtcctggtggaggtg
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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