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Previous release (v1)
2025-12-19 07:18:44, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS XM_040701179 1092 bp mRNA linear VRT 01-MAR-2022
DEFINITION PREDICTED: Gallus gallus myosin heavy chain IB-like (LOC112532565),
transcript variant X1, mRNA.
ACCESSION XM_040701179
VERSION XM_040701179.1
DBLINK BioProject: PRJNA698609
KEYWORDS RefSeq; includes ab initio.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
COMMENT MODEL REFSEQ: This record is predicted by automated computational
analysis. This record is derived from a genomic sequence
(NC_052536.1) annotated using gene prediction method: Gnomon,
supported by mRNA evidence.
Also see:
Documentation of NCBI's Annotation Process
##Genome-Annotation-Data-START##
Annotation Provider :: NCBI
Annotation Status :: Full annotation
Annotation Name :: Gallus gallus Annotation Release 106
Annotation Version :: 106
Annotation Pipeline :: NCBI eukaryotic genome annotation
pipeline
Annotation Software Version :: 9.0
Annotation Method :: Best-placed RefSeq; Gnomon
Features Annotated :: Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##
##RefSeq-Attributes-START##
ab initio :: 13% of CDS bases
##RefSeq-Attributes-END##
FEATURES Location/Qualifiers
source 1..1092
/organism="Gallus gallus"
/mol_type="mRNA"
/isolate="bGalGal1"
/db_xref="taxon:9031"
/chromosome="5"
/sex="female"
/tissue_type="blood"
/geo_loc_name="USA: Fayetteville"
/lat_lon="36.0822 N 94.1719 W"
/collection_date="20-May-2019"
/collected_by="Nick Anthony"
gene 1..1092
/gene="LOC112532565"
/note="Derived by automated computational analysis using
gene prediction method: Gnomon. Supporting evidence
includes similarity to: 1 mRNA, and 88% coverage of the
annotated genomic feature by RNAseq alignments"
/db_xref="CGNC:85722"
/db_xref="GeneID:112532565"
CDS 1..825
/gene="LOC112532565"
/codon_start=1
/product="protein argonaute 2-like isoform X1"
/protein_id="XP_040557113.1"
/db_xref="GeneID:112532565"
/db_xref="CGNC:85722"
/translation="
MRTVSCFEQEVSDVSSDEAAEVALNGGAARHGRPRGAPRGGGGRARGAGRRREGGLAVRGGRGAQLRAAHTGSAPPASLAVVPTRAAARRHGNGRPRGSAGGGVTPCGARDGAAPGAGIASRVRPRPVRGDGWSRAAAPAPRSGRGSLCCTGPKRRGRHAELCDTAARGGERRGSERVVEPRAAREPRAEGKMAFKGPPSDSGRSVVLCLSLGRSHRAASRFPRENLLPARILSLAFSSLRRSMERTGWGHTVPGGHRPGEMMTECPPSLNGLR"
ORIGIN
atgaggacagtgtcctgttttgagcaagaagtctcagatgtgagctcggatgaagctgccgaggttgcgctgaacggcggcgccgcgcggcacgggcggccccggggggcaccgcggggggggggggggagggcacggggtgcggggcggcgccgggagggagggctcgcggtgcggggcggccgcggggcacaattgcgggctgctcacacgggctccgcaccgccggcttcgcttgcagtcgttcccacgcgggcggcggcgcgtcgccacgggaatgggcgcccgcggggatccgctgggggcggcgtgacgccgtgcggtgcccgggatggagctgcgcccggggcggggatcgcctcgcgggtgcggcctcggcccgtgcgcggggacggctggagccgcgcggcagcccctgcgccgcgatccggccgtgggtccctctgctgcacggggccgaagcgccgcgggcggcacgcggagctctgcgacaccgccgcgcggggcggggaacgccgggggtcggagcgcgtggtggagccgagggcggcccgagagccgcgggcagagggaaagatggcctttaagggtcccccgtccgactccggccgttccgtcgttctgtgtctgtctctggggagatcccaccgcgcggcatctcggttcccccgtgaaaatctgctgcctgcacggatcctctccctggccttcagttcccttaggaggagcatggagcgtaccgggtggggtcacaccgtgcctgggggccatcgcccaggggaaatgatgactgagtgtcctccgtcgctaaatggtttgcggtgagtctgatcccagcagcctgcaggctgtgtgctgatggggtgtgtgggtgtgggaagccctgcagccccggggtgtctctgcacgtgccctgctcagctcacacctgccctgccctgtgctgcccgcatccacggaacgagctatagaagcctgagctgtcccctgtcttctggcatgatcctggagcgctgaagagaagagcttaacttgcaaagttacactgacattgtgagccttgcatacctaataaaccatggcttctttaac
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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