LOCUS       NM_001398377            7299 bp    mRNA    linear   VRT 01-MAY-2025
DEFINITION  Gallus gallus PLAG1 zinc finger (PLAG1), transcript variant 3,
            mRNA.
ACCESSION   NM_001398377
VERSION     NM_001398377.1
KEYWORDS    RefSeq.
SOURCE      Gallus gallus (chicken)
  ORGANISM  Gallus gallus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
            Phasianidae; Phasianinae; Gallus.
REFERENCE   1  (bases 1 to 7299)
  AUTHORS   Tang,H., Finn,R.D. and Thomas,P.D.
  TITLE     TreeGrafter: phylogenetic tree-based annotation of proteins with
            Gene Ontology terms and other annotations
  JOURNAL   Bioinformatics 35 (3), 518-520 (2019)
   PUBMED   30032202
REFERENCE   2  (bases 1 to 7299)
  AUTHORS   Pajer,P., Pecenka,V., Kralova,J., Karafiat,V., Prukova,D.,
            Zemanova,Z., Kodet,R. and Dvorak,M.
  TITLE     Identification of potential human oncogenes by mapping the common
            viral integration sites in avian nephroblastoma
  JOURNAL   Cancer Res 66 (1), 78-86 (2006)
   PUBMED   16397219
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAENSK010000043.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR12888547.204445.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN06140855 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAENSK010000043.1  13856148-13856330   c
            184-363             JAENSK010000043.1  13829636-13829815   c
            364-463             JAENSK010000043.1  13815738-13815837   c
            464-822             JAENSK010000043.1  13811640-13811998   c
            823-7299            JAENSK010000043.1  13804586-13811062   c
FEATURES             Location/Qualifiers
     source          1..7299
                     /organism="Gallus gallus"
                     /mol_type="mRNA"
                     /db_xref="taxon:9031"
                     /chromosome="2"
                     /map="2"
     gene            1..7299
                     /gene="PLAG1"
                     /note="PLAG1 zinc finger"
                     /db_xref="CGNC:53668"
                     /db_xref="GeneID:429484"
     exon            1..183
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     exon            184..363
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     exon            364..463
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..822
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    572..574
                     /gene="PLAG1"
                     /note="upstream in-frame stop codon"
     CDS             581..2086
                     /gene="PLAG1"
                     /note="isoform a is encoded by transcript variant 3; zinc
                     finger protein PLAG1; pleiomorphic adenoma gene 1 protein"
                     /codon_start=1
                     /product="zinc finger protein PLAG1 isoform a"
                     /protein_id="NP_001385306.1"
                     /db_xref="CGNC:53668"
                     /db_xref="GeneID:429484"
                     /translation="

MATVIPGDLSEVRDTQKVPSGKRKRGETKPRKNFPCQLCDKAFNSVEKLKVHSYSHTGERPYKCTQQDCTKAFVSKYKLLRHMATHSPEKTHKCNYCEKMFHRKDHLKNHLHTHNPNKEAFKCEECGKNYNTKLGFKRHLALHAATSGDLTCKVCLQTFESTGVLLEHLKTHAGKSSGGVKEKKHQCEHCDRRFYTRKDVRRHMVVHTGRKDFLCQYCAQRFGRKDHLTRHMKKSHNQELLKVKTEPMDLLDPFTCNVSVPIKDELLPVMSLPSSELTSKPFTNTLQLNLYNTQIQSMQSSASAHQMVATSLPLGMPCPIDMESVHPSHQLSLKYPLSSTSYAVSMPEKEQPLKGEIESYLMELQSGMPSSSQDSQASSSKLGLDPQVGPLDDGSGEVSLSKGSVPISEPLNTPSLDFSQLFNFIPVNGPPYNPSVSVGNLGMSYTQEEAHSSMTQLPPQTQDPQDPSNSIGLGSLHSLSAAFTSSLSTTTTLPRFHQAFQ"

     misc_feature    581..670
                     /gene="PLAG1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q58NQ5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    644..655
                     /gene="PLAG1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q58NQ5.1);
                     Region: Nuclear localization signal.
                     /evidence=ECO:0000250"
     misc_feature    686..748
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(701..703,707..709,713..715,719..724,731..736,
                     743..745,791..793,797..799,809..814,821..826,833..835,
                     875..877,881..883,887..889,893..898,905..910,917..919)
                     /gene="PLAG1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    <752..997
                     /gene="PLAG1"
                     /note="Putative transcriptional repressor regulating G2/M
                     transition [Transcription / Cell division and chromosome
                     partitioning]; Region: SFP1; COG5189"
                     /db_xref="CDD:227516"
     misc_feature    770..838
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    815..883
                     /gene="PLAG1"
                     /note="Zinc-finger double domain; Region: zf-H2C2_2;
                     pfam13465"
                     /db_xref="CDD:463886"
     misc_feature    860..922
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    947..1009
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1034..1096
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    order(1049..1051,1055..1057,1061..1063,1067..1072,
                     1079..1084,1091..1093,1154..1156,1160..1162,1172..1177,
                     1184..1189,1196..1198,1238..1240,1244..1246,1250..1252,
                     1256..1261,1268..1273)
                     /gene="PLAG1"
                     /note="putative nucleic acid binding site [nucleotide
                     binding]; other site"
                     /db_xref="CDD:275368"
     misc_feature    1139..1201
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1223..1279
                     /gene="PLAG1"
                     /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn
                     finger"
                     /db_xref="CDD:275368"
     misc_feature    1676..1798
                     /gene="PLAG1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q58NQ5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     misc_feature    1919..2002
                     /gene="PLAG1"
                     /note="propagated from UniProtKB/Swiss-Prot (Q58NQ5.1);
                     Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
     exon            823..7299
                     /gene="PLAG1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

gtgtgcggcaggctgggctgcaccgcagcgcatacactacaatggctgctggaaggacgggaaagcaaacaatttccaggcccgccgcgtccagcccgaaatatggggaaaaaattacagaaaaatcggagaacactgtaaagggtggaaacggggcgcagaggggatgctgaggctcccgcgtgccacagcagaggcctgaggcagccaggtaaaagcccagcagtaaaggtcagtagcctcacctatgccatactgtccagcctggcctgggcttgctggaagcactgactcatcagatgcgagcaatacccaagaaacaaccacaggatcctgcagaggctggaggatgaagccgatccaaccagtaaaaatgggaagtactggattctggtttcctccaagaagagtcagcggaactggttaagaccaaaatctgaggactttagtgggcaaacatcagtccccttttgctttcttttacgaccacatgaaacttgagaagccatctaaagctaaatcatttagtggagttgggcaattcccaagtgtccaacaagaaggcctggtttaggctgcgatggccactgtcattcctggtgatttgtcagaagtaagagatacccagaaagtcccttcagggaaacgtaagcgtggtgaaaccaaaccaagaaaaaactttccttgccaactgtgtgacaaggcctttaacagtgttgagaaattaaaggttcactcatactctcacacaggagagaggccctacaagtgcacacaacaagactgcaccaaggcctttgtttctaagtacaaattactaaggcatatggctactcattctcctgagaaaacccacaagtgtaattattgtgagaaaatgtttcaccgaaaagatcacctaaagaatcacctacatacacacaatcccaacaaagaggcctttaagtgtgaagaatgtggaaagaactacaataccaagcttgggttcaaacgtcacctggctttgcacgctgcaacaagcggtgacctcacctgtaaggtatgtttgcagacttttgaaagcacaggagtgctgctggagcacctaaaaactcatgcaggcaagtcatcgggtggagtgaaggagaaaaaacaccagtgtgaacactgtgatcgtcggttctacacccgaaaggatgtccgtagacacatggtagtgcacactggaagaaaggacttcctctgtcagtactgtgcacagagatttgggcgtaaggatcacctaacgcgccacatgaagaaaagtcacaaccaagaacttttgaaggtcaaaacagagccaatggaccttctagatccctttacctgcaacgtttctgtgcctatcaaggatgagctgcttccagtgatgtcgttaccttccagtgaactgacatcaaagccatttacaaacactttgcaattaaatctctacaacactcagattcagtccatgcagagttctgcatctgcacaccaaatggttgccacgtcgttaccattgggaatgccttgtccaatagatatggagtctgtccacccttcgcaccagctatcattgaaatatccgctcagttctacctcatacgcagtttctatgcctgaaaaagaacagcctttgaaaggggaaatcgaaagttacttaatggagttgcaaagtggtatgccttcttcgtcccaggattctcaagcatcttcatcaaaactagggctggatccacaagtagggccgctagatgatgggtctggggaggtttccctttccaagggctctgttcctattagtgaacctctaaacaccccgtcattggacttttctcagctgttcaacttcatacccgtcaacggccctccctataacccttctgtttcagtgggaaaccttggaatgagttatacgcaggaggaggcacattcttctatgactcaacttccaccacagacacaggatccacaagatcctagcaatagtataggtcttgggtctctgcactcgttgtcagcagctttcacgagcagtctaagcacaaccaccaccctaccacgatttcatcaagctttccaataggatgtacaaagctggcttgttactgtctatttgtagaaatgccttaggtgaccatttttaacttagtgcctactataagacattatcagttctctgcttttgtacagtaccaatctcatgaagccagtaagaaatttaaatctttaaaaatgttttggaagtgtttattctcagctgtgtttacttcattgtttttttgtttttgtttttttttttaagtctcattgtattgttttcattttcactgccaattgacacatttaaaatgtccactagaaaggcatcccaagcaaactttcaacacgcatcccttttttaaaaaccttttcaaccttacagccacttctgttctgttgatgtcagtggtggaactaccatttttaccttttatatattacagcatttgcaaaggatccagttcaaacgtgtatcacaaaggttcctgaagattcgggaaaaaagtttctccggtccctttccaaaaaaaccctcttcccaaatggtgacatctgatctgttctataatgacaaattgtaatttttaaataaaggtagaattcagatttttctgaaaatttggatgtgtatatatagaagtccatatatacacatgtacatatatataacgttttgacttatattgaagtcattataaaaggtgttaggaattttgccattttctggcttaaatctttgtggcttgttatgaatattggaagaaaaaaaatacagtttaattttctaaaatcatggctgaacagaacttcaacagagaatctctgcttgcctaactgacaaaagtttcaagttgaatttggaactgtgttgtgctttcatgactctggtagaggaaaacaggcaaatttaatggctgatcttgaaatataaaagtgttgtaatttagtaatgcagaatattttgtcgcagtttttgttttgattcttaacttgctgtttttttctctttagtagcatagaaagagtactgcataggaatcttccaatagtgtactgacatttgtaggcatcggtcttctcccagctgccaccaccaaagggtggatcaagtccagccagaaagtgtgtatctattttcagttcaatattagtgtgcggtcagagagtgaatgtaaatttacaaataccatttttggggctttttttttttttttttttctattggaatgaacttttcagctgtgttacatggtgtgttatgtcctcctaagcaacaagttagatgttaatcatactttctacacctgggtacttggttagggactttttgcccactgccaagatttaaagacaggactcttaggagtgaagtaaaagcatattgcttacaccacttttgcctaatgcaatattttctattccccaacccctaataaccaaaagaggaaaaaaggaaaaaaaaacaaaaacaaaaacaaacctgtgatgcatgaaagcaaactcgagttgctgtaattcaacaataacacgcttttccttgtcatttttgtacaaggaattaaaaaatagaaatcgagtacatttgtatctctcaaacaataatgaggattcatacgaggttttaagtggttaaactaaatatacttcacagaaacaaaagttgctcccatttaaggagctcgtgctccagatgttttatcagtagctcctacttttttttaattctaggagcaatatgcaggtgtagttttactattttatacatatatgtatttaaattttattactgaaagataacatttttataaatgtgtttgtgttccaaaggcattaaaataaggatgtattgataaggaaaataccttttgaaattctacaaactgctcctaaatgttgggtttaggagctcgttatctcaaagtgggcttttagctctgcttcatgactgcttcctctggtttctatgaaacagatcgcttgcttacttacatctttagttgaatgattcgttcaatattgctttttttttttttcttctttttctcatcacctttataaaggaaagaaaaacacaggtgaacagagcacaaggtgaacgccacagaatgtatttctggttaaaaatcagcaaccacaatgcacatagggacaacttggctttcctctgagtcttttcaggcaatttgggatgaagagcaacggcctcccttgctcctgtgagctctgatccacgtgaagcagagcccagcagctccccgtgagcggagggatgccgtgacgctcggctctggcagcggctgcggagtggataggccgcgctcttcttcctggcgatgatgcacacaggccttgggagcttcagctctgtgagcaatttttggatggcctggaggaagttccttggtcgagtgtcacaaataagttcagactcctctgccgctgccagatgcttggccaggctgctcgctgaggggacttgatgtggcacatgtaccgctcggcgcagggcagtgccacctgcttatcaggcccagctgccgatcagactcgattaaaaaaacccaacaaacgcttggccaacacccagttcttagtacttagccggagaccttactacttggttagtgccttagcttcctgagaaggggttgacatttcactttggagatagacgtacatttcagtggaggagcagggacctcagacaaggtattgaacctcattcagtcagggctgcggccggcggctgcactcggcctgtgccgctgagctaggatgtaggacggtgtggaagcagatgtgacactgtaagcaatattaacacattagtgcttttggatatcatttaggcagagtcagtattggccactactaaaacgtcacgttttaaaccctgttttctaggtttcagattggttctttgagggaggggggagggctggctgatcgtgcaccactctttgtgcaacttcgagacttctagtgaggtttgttgggttttttttttgtttgttttttcttttttttttttttctgttccgttctgtttgggttttgttgtgttttttttttttttttttaaatatatatatttttgtgtacttgttgcttgtgcttaatttagtagtaaattgtggaatagagtgatttattgttaatttggcagtagcggttttttaaaaccatatactgactgaaacatgagccagagctgattgctttattaagctaataatgaatgttaagagtacatattttcaggatcatttgcctagtgagctaaacatgtattataggccaatattttttaaaataaagcttggtcaacctctatgttacacatattacaagatatagcactttcaaaagaaaacctaaaccttttaagaaagtttcttacaggttatgctttttattataaaaccttttattataatttgtttcaagtgccattagattacatatatgtaggcctttggtataatgctttgtgtacaaaatggtagacattgtaattttaaacaggtacatttttacagtgttttcttatcaatttgctatattgcacagaaccagtgtgtctttcttaagggttttacaatggtttttactaggtttacacgtttcaaactacactgtcttctactgccattttgaataccagtcaaaaaaaaaaaaaaaaaaagaaaaagaaaaggaaaaagaaagagtttgtcctcaccaattgtaatttgtgtcctctggagttctgggtggtaactattgcaaaaatatttaacacgcagtatttgatgcagatgttttttttttatcatatgctctcaacactatgctgctgtctgaagttaacttagggcctgatcctgcatccgtaaacgtcaaggggagcagggctgcatccttcgttatgtctgtctcatacactggtttagcagctcatcctgtattcttctcagtctatagataagcctccaaagtaaatgtacttacctggtatgtagtaaactgtatagacttagctgcccattctgcatcttcccagtgtacaattaaaaccataggcattagcattacactcagcgtacaaacaatgccacagtagttcaaaatgtgtttggatagtcccaaagctttatgtaataagggtgtcttactttgttggaaggcagtgtcttttgataacagttatctagccctggaagtgacacagaactattgctaatcatatgtaaacacttttcagtataagcttcagtggtacagtcgaaccagagtgaatgtttatctcctcagaaacactcctgcaatattgttatattggatcatgctgctaatgtaacttgggatacaactcctctcatggtgctacaaacctccctgtctcattcagatgtatttttacccatagaaaaaaggactatactagacctatagttgtatgatatatttttatactgtgacttaatttgtcattaatgaactttgtacaacaccacaatgtattcatatgcacttgcagaagtaaaatgtcggacatgcaaatggaaacgctgacaagcccagctcttgttcacagaaacaggtggtttagttaaaattcattgcgggctttttatatggtgtggagtgaagaacctactatatattactaaaagcttctgaatttagacaaaaactgggaaagagtatattggggaatgatgacacacccaaacctgactcggattgctgaaattctattttttagctagtgggaaaattgttcggactcgaatgctaaaatgttttaatgataaaattttttttgagtcaaaaatagagaaaaaaaaaagaacacagaaaaccctgcattccagacagaatttgtgtatgtttcttgcatttaaaatttgctatcctgtgatatgggaaattgagttgcttatcatgtatatgtactttaaaatgtattcacaaactactgttgtatttgtataaaatatagacaaaaagattgcgtatatatttttgtgtataagctctgtaaaatagcaatcacattatgaagctgcagcagaacttcattttaaacattcacatccaaagaaacagactatttattgtccacataccctgattataaaatataccttgctgctattaaacaatagtgctgcagcttcttgtggcctacagtgttatgtttgctgtacaaaaatatgtgaactccacaaaatatatcaataaaattacagaatggttttagttaatgaataa

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