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Previous release (v1)
2026-01-17 21:54:12, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS NM_001244593 3601 bp mRNA linear VRT 26-JUN-2025
DEFINITION Gallus gallus scinderin (SCIN), transcript variant 1, mRNA.
ACCESSION NM_001244593 XM_001234626
VERSION NM_001244593.2
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 3601)
AUTHORS Tang,H., Finn,R.D. and Thomas,P.D.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 3601)
AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 3601)
AUTHORS Nurminsky,D., Magee,C., Faverman,L. and Nurminskaya,M.
TITLE Regulation of chondrocyte differentiation by actin-severing protein
adseverin
JOURNAL Dev Biol 302 (2), 427-437 (2007)
PUBMED 17097081
REMARK GeneRIF: Adseverin-induced rearrangements of the actin cytoskeleton
may mediate activation of MAP signaling pathways necessary for
chondrocyte hypertrophy, as evidenced by changes in cell
morphology, and expression of chondrocyte maturation markers.
REFERENCE 4 (bases 1 to 3601)
AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J.,
Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M.,
Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M.
TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
gene function analysis
JOURNAL Genome Biol 6 (1), R6 (2005)
PUBMED 15642098
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAENSK010000036.1.
On Nov 27, 2021 this sequence version replaced NM_001244593.1.
Sequence Note: The RefSeq transcript and protein were derived from
genomic sequence to make the sequence consistent with the reference
genome assembly. The genomic coordinates used for the transcript
record were based on alignments.
##Evidence-Data-START##
Transcript exon combination :: AJ720675.1, HAEK01044132.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA103992290, SAMEA103992323
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-215 JAENSK010000036.1 18789316-18789530
216-370 JAENSK010000036.1 18794118-18794272
371-532 JAENSK010000036.1 18795766-18795927
533-682 JAENSK010000036.1 18808547-18808696
683-775 JAENSK010000036.1 18823272-18823364
776-908 JAENSK010000036.1 18824562-18824694
909-997 JAENSK010000036.1 18826462-18826550
998-1213 JAENSK010000036.1 18826755-18826970
1214-1335 JAENSK010000036.1 18828182-18828303
1336-1426 JAENSK010000036.1 18828520-18828610
1427-1597 JAENSK010000036.1 18831052-18831222
1598-1775 JAENSK010000036.1 18831702-18831879
1776-1897 JAENSK010000036.1 18832346-18832467
1898-1975 JAENSK010000036.1 18834004-18834081
1976-2036 JAENSK010000036.1 18835430-18835490
2037-3601 JAENSK010000036.1 18836407-18837971
FEATURES Location/Qualifiers
source 1..3601
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="2"
/map="2"
gene 1..3601
/gene="SCIN"
/note="scinderin"
/db_xref="CGNC:8188"
/db_xref="GeneID:420588"
exon 1..215
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
CDS 17..2170
/gene="SCIN"
/note="isoform 1 is encoded by transcript variant 1;
adseverin"
/codon_start=1
/product="scinderin isoform 1"
/protein_id="NP_001231522.2"
/db_xref="CGNC:8188"
/db_xref="GeneID:420588"
/translation="
MAPERHPPAFEGAGQESGLQVWRVERLELVPVPPSRHGDFFVGDAYLVLHTVRRGAAVAYRLHYWLGKECTQDESTAAAIFTVQLDDYLGGKPVQSREIQGYESNEFVSYFKGGIKYKAGGVASGFNHVVTNDLSAQRLLHIKGRRVVRATEVPLTWASFNKGDCFIIDLGNEIYQWCGSSCNKYERLKATQVAVGIRDNERNGRSRLITVEEGSEPDELITVLGEKPELPECSDDDDEMADIANRKSAKLYMVSDASGSMKLSVVAEENPFSMAMLLSEECFILDNGAARKIFVWKGKDANPQERKAAMKNAETFVQQMNYPANTQIQVLPEGGETPIFKQFFKDWKDKDQSDGFGKVYVTERVAKIEQIEFDATKLHESPQMAAQHNMIDDGSGKVQIWRVESSGRVPVEPETYGQFYGGDCYIILYTYPKGQIIYTWQGACATKDELTASAFLTVQLDRSLNDQAVQIRVSQGKEPPHLLSLFKNKPLTVYKNGTSKKEGQKPAPPTRLFQIRRNLMSVTRIAEVDVDAMSLNSNDAFVLKLPNNTGYTWVGKGVNKEEEQGAQYIASVLKCQTAKINEGQEPEEFWKALGGKKKYQTSSQLLTKAEDHPPRLFGCSNKTGRFIIEEVPGEFTQDDLAEDDVMLLDAWEQVFVWIGKEANETERQESVKSAKRYIETDPSGRDKGTPIVIVKQGHEPPTFTGWFLAWDSNKWKN"
misc_feature 17..1105
/gene="SCIN"
/note="propagated from UniProtKB/Swiss-Prot (Q5ZIV9.2);
Region: Actin-severing. /evidence=ECO:0000250"
misc_feature 44..379
/gene="SCIN"
/note="Gelsolin sub-domain 1-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S1_like; cd11290"
/db_xref="CDD:200446"
misc_feature order(95..100,212..214,230..235,239..247,251..259,
263..268,299..301,305..307)
/gene="SCIN"
/note="putative actin binding interface [polypeptide
binding]; other site"
/db_xref="CDD:200446"
misc_feature 422..691
/gene="SCIN"
/note="Gelsolin sub-domain 2-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S2_like; cd11289"
/db_xref="CDD:200445"
misc_feature 761..1054
/gene="SCIN"
/note="Gelsolin sub-domain 3-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S3_like; cd11292"
/db_xref="CDD:200448"
misc_feature order(1037..1039,1052..1054)
/gene="SCIN"
/note="putative nucleotide binding site [chemical
binding]; other site"
/db_xref="CDD:200448"
misc_feature 1106..2161
/gene="SCIN"
/note="propagated from UniProtKB/Swiss-Prot (Q5ZIV9.2);
Region: Ca(2+)-dependent actin binding.
/evidence=ECO:0000250"
misc_feature 1184..1474
/gene="SCIN"
/note="Gelsolin sub-domain 4-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S4_like; cd11293"
/db_xref="CDD:200449"
misc_feature order(1232..1237,1337..1339,1355..1360,1364..1372,
1376..1384,1388..1393,1424..1426,1430..1432)
/gene="SCIN"
/note="putative actin binding interface [polypeptide
binding]; other site"
/db_xref="CDD:200449"
misc_feature 1445..1447
/gene="SCIN"
/note="putative nucleotide binding residue [chemical
binding]; other site"
/db_xref="CDD:200449"
misc_feature 1538..1810
/gene="SCIN"
/note="Gelsolin sub-domain 5-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S5_like; cd11288"
/db_xref="CDD:200444"
misc_feature 1562..1564
/gene="SCIN"
/note="putative nucleotide binding residue [chemical
binding]; other site"
/db_xref="CDD:200444"
misc_feature 1853..2149
/gene="SCIN"
/note="Gelsolin sub-domain 6-like domain found in
gelsolin, severin, villin, and related proteins; Region:
gelsolin_S6_like; cd11291"
/db_xref="CDD:200447"
exon 216..370
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 371..532
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 533..682
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 683..775
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 776..908
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 909..997
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 998..1213
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1214..1335
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1336..1426
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1427..1597
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1598..1775
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1776..1897
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1898..1975
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 1976..2036
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
exon 2037..3601
/gene="SCIN"
/inference="alignment:Splign:2.1.0"
ORIGIN
ggctccgtgcagcgctatggctcccgagcggcacccgccggcctttgagggcgccgggcaggagagcgggctgcaggtgtggcgcgtggagcggctggagttggtgccggtaccgcccagccgccatggggacttcttcgtcggggacgcctatctggtgctgcacaccgtccgccgcggagccgccgtcgcctaccgcctgcactactggctcgggaaagaatgtacccaggatgagagtacagctgcagctatcttcactgttcaactggatgactacttaggaggaaagcctgtacagagcagagaaattcaaggatatgaatctaatgagtttgtgagctatttcaaaggaggaattaaatacaaggcaggtggtgttgcctctggatttaatcacgttgttactaatgatctgagtgcccagaggcttctccatatcaagggccggagagttgtgagagccacagaagtccccttgacttgggccagcttcaacaaaggagattgtttcattattgaccttggaaatgagatctatcaatggtgtggctcttcatgcaacaaatacgagcgcctgaaggccactcaagttgctgttggcattcgggacaacgaacgaaacgggaggtccagattaattacggtggaagagggcagcgaaccagatgagcttataacggtcttaggggaaaagccagagcttcctgaatgtagtgatgatgacgatgagatggctgatattgcaaatcggaagagtgctaaactctatatggtgtcagatgcaagtggatccatgaagttgtcagtggtagcagaggaaaaccctttctctatggctatgcttttgtcagaggaatgcttcatcctggacaatggtgctgcaaggaagatctttgtgtggaaaggcaaagatgctaacccacaggaaagaaaggctgccatgaagaatgctgaaacattcgtacagcagatgaattatcctgccaacacacagattcaagtgcttccagaaggaggtgaaacgccaattttcaaacaatttttcaaagactggaaggataaagatcaaagcgatggcttcggcaaagtatatgtcacagagagagtggctaaaattgagcagattgaatttgatgctaccaagttacatgagtctccacaaatggctgcacagcataacatgatagatgatggctcagggaaagtacagatctggcgtgtggaaagcagtggcagagttcctgtggaacccgaaacgtatggacagttctatggtggtgactgttacatcatcctatacacatatcctaaagggcagatcatctacacatggcaaggagcctgtgctacaaaagatgaactgactgcatctgcatttctgactgttcagctcgaccggtcattgaatgatcaggctgtgcagattcgagtcagtcaaggcaaagaacctccccatttactgagcctgttcaaaaataaaccacttactgtctacaagaatggaacatccaagaaggaaggtcagaaacctgctccacccacacggctcttccaaatacgcaggaacctaatgtccgttaccaggattgctgaggttgatgttgatgcaatgtcactgaattccaatgatgcctttgttctgaaacttccaaacaacactggttacacctgggtgggaaaaggagtaaacaaagaagaggaacaaggagctcaatacattgccagtgttcttaagtgccagactgctaagattaatgaaggccaggaaccagaggaattctggaaagcacttggaggtaaaaaaaaatatcagacttcatctcagcttttgacaaaggctgaagatcatcctcctcgcctgtttggttgttctaataagaccggcagatttattattgaggaggtcccaggagaattcactcaggatgatttggctgaagatgatgtcatgttactagatgcttgggagcaggtttttgtctggattgggaaagaagctaatgaaactgaacgacaggaatccgttaaatctgccaaacgctatattgaaacagacccttctggcagagataaggggacccccatcgttatagtgaagcaggggcatgagcccccaaccttcacgggctggttcctggcttgggattccaacaaatggaaaaactgagctacccaagagagcttcagcttcaagccaaagaatcatgagtgcacaactattttctagtatttttaagcataagcttatgcaacaacatgatgcagatcttgttaccctttgctgagctttgatatctttatatgaataacttagcggttctcagtgctggataggatgaatgataattgtcaagtgaggtgggtggggcttttcacgtaggaaatatgcaacctatgaattcttcacaaaagtggaccagtttattttactttgcaaagatgggccaaattctgccttcccttaacaattcaaaccaatgccaaagaaactcctttagtgtaaagacagcataattttgtgcataatttggctggtgtagaatttcagacaatgcctgatgcagagctttgtcttgcaaggggcaaacaagagatgagtattttgacacagctgttcttaacatgtctgtttgctgtccttggtctagatattataattggagcttaggattgtacacttgtaagaatatgaaggtgttttgtggtgcgtagggtttttttttttttttagattctatctaaatcattttaatggattttaggtttctctatgcaaaccagcctccagctccacatctttttaactgaagctctcacgcacattttagggaactacttttcagtggaagcagaagtaacagcttcaaaaatacttactctgccttaaccagaccgcacttaagccatactttgccttgattgccttactcagcagtccctcgtgctttcatggcatgtaatttgttcacattgtcaggtacaggatatgtttccaactcattttctaaacaggtctcagtcaaatatcagcatggaaactgcttttttcagcagcattcctgggaatttggagtatgaggaagcaccacataagtttctctcagacacagctatttgggatttctttttttgtattctggtgaatttaagagcatatcttcaaagtatgtttttttaagttgtagctttgccagaaaagtctccttaagggcattaggaaaaatcctgctacaaatctatagcgctgctttaagcatttatcctagaatgcttgttttaaacaatttgtacagcagtaaatcatgttaatgtggctttttaacgaaggcttttcaacacttttgttgttctcataagatagtttggaaagtgaacattttagttattttttactttttatgattgtgattttgaatctgagttatgcaaaagagtgaattttatctgagctcataataacattgacaaaaactaaagagaagctaagtcaattaattcagggagttttttcagccttaaacattcatttagatcctttcttaaataactgggctgtatctggatgtcatttcatttaaaataaaattatgaaacagta
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]