2024-09-29 11:27:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001012820 2086 bp mRNA linear VRT 23-SEP-2023 DEFINITION Gallus gallus claudin domain containing 1 (CLDND1), mRNA. ACCESSION NM_001012820 XM_416577 VERSION NM_001012820.2 KEYWORDS RefSeq. SOURCE Gallus gallus (chicken) ORGANISM Gallus gallus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus. REFERENCE 1 (bases 1 to 2086) AUTHORS Burge S, Kelly E, Lonsdale D, Mutowo-Muellenet P, McAnulla C, Mitchell A, Sangrador-Vegas A, Yong SY, Mulder N and Hunter S. TITLE Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation JOURNAL Database (Oxford) 2012, bar068 (2012) PUBMED 22301074 REMARK Publication Status: Online-Only REFERENCE 2 (bases 1 to 2086) AUTHORS Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J and Wilson SA. TITLE Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags JOURNAL Genome Res 15 (1), 174-183 (2005) PUBMED 15590942 REFERENCE 3 (bases 1 to 2086) AUTHORS Caldwell RB, Kierzek AM, Arakawa H, Bezzubov Y, Zaim J, Fiedler P, Kutter S, Blagodatski A, Kostovska D, Koter M, Plachy J, Carninci P, Hayashizaki Y and Buerstedde JM. TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis JOURNAL Genome Biol 6 (1), R6 (2005) PUBMED 15642098 COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence was derived from JAENSK010000019.1. On Sep 23, 2021 this sequence version replaced NM_001012820.1. ##Evidence-Data-START## Transcript exon combination :: AJ720437.1, HAEK01004560.1 [ECO:0000332] RNAseq introns :: mixed sample support SAMEA103992290, SAMEA103992323 [ECO:0006172] ##Evidence-Data-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-170 JAENSK010000019.1 34621-34790 c 171-346 JAENSK010000019.1 34099-34274 c 347-640 JAENSK010000019.1 28094-28387 c 641-748 JAENSK010000019.1 27312-27419 c 749-886 JAENSK010000019.1 26810-26947 c 887-2086 JAENSK010000019.1 25502-26701 c FEATURES Location/Qualifiers source 1..2086 /organism="Gallus gallus" /mol_type="mRNA" /db_xref="taxon:9031" /chromosome="1" /map="1" gene 1..2086 /gene="CLDND1" /note="claudin domain containing 1" /db_xref="CGNC:66314" /db_xref="GeneID:418357" exon 1..170 /gene="CLDND1" /inference="alignment:Splign:2.1.0" exon 171..346 /gene="CLDND1" /inference="alignment:Splign:2.1.0" misc_feature 343..345 /gene="CLDND1" /note="upstream in-frame stop codon" exon 347..640 /gene="CLDND1" /inference="alignment:Splign:2.1.0" CDS 352..1107 /gene="CLDND1" /codon_start=1 /product="claudin domain-containing protein 1" /protein_id="NP_001012838.1" /db_xref="CGNC:66314" /db_xref="GeneID:418357" /translation="
MMDNRFATALVIACVLSLISTIYMAASLGTDFWYEYHTLSPAENITEAGRSIWEEFVSEEADEKTYTDALFRCNGTVGLWRRCITVPKNSHWYSPPETDMTTNCISFSLSDQFMEKYVEPGNHNSGTDLNRTYLWRLQFLLPFVSLGLMCFGALIGLCACACRSLYPAIATGVLHFLAGLCTLGLVGCYVAGIELLHKKLPLPGDVRGEFGWSFCLACVSAPLQFMAAALFIWAARTNRKEFTLLKAYRVA"
misc_feature 403..1047 /gene="CLDND1" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" exon 641..748 /gene="CLDND1" /inference="alignment:Splign:2.1.0" exon 749..886 /gene="CLDND1" /inference="alignment:Splign:2.1.0" exon 887..2086 /gene="CLDND1" /inference="alignment:Splign:2.1.0" ORIGIN
ggggcggggcggtgtgcggccttatgactgctgcggcaccttcgattcggaagaaggttgcgacggactgcagttcccgtggtgccacttggcggggcgtagcgttggcccaggggcagctgcggcgcggaagtggtgcgcggggctggggatggaggtggttcgctgcggctgctgcttgtgcatcgatggcattgctggagcggtctgaatggagcagttagggccagcagggagttggcggtgtgtgcttctggcttactgcaggacgccggtagcacggtgtctctgaagtcacctgcaaccactggagctgcgtatgctgctggatctgaggagctctaagcagcaatgatggataaccgttttgctacagcactggtaattgcatgtgttctcagcctcatctccaccatatatatggcagcttcattgggcactgatttttggtatgagtatcacactctgtcccctgctgagaacattactgaagctggcaggagcatctgggaggaatttgtcagtgaagaggcagatgagaagacctacacagatgcactattccggtgcaatggcacagttgggttgtggaggaggtgcatcactgtacccaaaaactctcactggtacagcccaccagaaactgatatgactacaaactgcatcagtttttccctctctgatcagtttatggaaaagtatgtagagcctggaaatcacaacagtggcaccgatttgaatcggacttatctctggcgattgcagtttctcctgccatttgtcagccttggtctcatgtgctttggagctctgattgggctctgtgcatgtgcctgtcgcagcctataccctgccattgccactggagtcctccattttctcgcaggactttgtacactgggcctggttggctgctatgtagctgggattgagctgcttcataagaagctgcccctacctggtgacgtgaggggtgaatttggctggtccttctgcctagcctgtgtctcagcacctttgcagtttatggcagctgctcttttcatctgggcagctcgaaccaacagaaaggaattcactctcttgaaagcataccgtgtagcatagtaagtgttgctacccaagtattaggtttccatgtaacagacttccctcaacccttattacttttattcttcttttagacagaaatttggccttgtactgcttgtttcttgccagttgagacagtatagcctgcaggccctgaagacaaagacctttgggctaaattaccaaactttgccagaagtctgcagaacttatattaaaaaccatttttagaaactatatatattttaagctttctttggttgattttctttgaatatccccttagttaaatgtgtatctcttctgaattttattaccttgtcagcctggaggaaatagggaaggcattgtgatgtggaagtgagataaggaaagatgcagttaggcgagaatgggaactggggagtgcaaataatcacaagttgggcactctccataggccatagagcagacaagagacacgtggaaacagaagaacctgtgttatggaaatactgtagttaaatcagtcctgtagcttagctttaggtctcttattcttgctagtttgttacttcctatagcttctgcaaaaactgatgtaggcagagcagctagctctgggagtggttgcacagcacactaccctaaacagagaatctgtgctgcttttgctgtggaagagaagtttccctatatggaactttgtgctactctagatatgctgcttccaggtacctgcactacatgtgtttgtgcactctaatcttaacttgtgattttgcttgctgtgaaatagggctttcctctctcctgttatactgaaggcaaaccttcacaacttttttcactttgaatttgatttagtgtatgtgtgtatatgtacataatataaacttttgtaaaactcttattttacctatgtagcacacaacaggctcttttttaaaaggtgctgctcaattcccaccttgccccaaatctattgtttaagtgaaataaaacagtcctcaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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