ver.2
Home
|
Help
|
Advanced search
Previous release (v1)
2026-01-17 21:54:11, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS NM_001008677 6440 bp mRNA linear VRT 30-APR-2025
DEFINITION Gallus gallus chromatin assembly factor 1 subunit B (CHAF1B),
transcript variant 1, mRNA.
ACCESSION NM_001008677 XM_025149509 XM_416723
VERSION NM_001008677.4
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 6440)
AUTHORS Tang,H., Finn,R.D. and Thomas,P.D.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 6440)
AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 3 (bases 1 to 6440)
AUTHORS Takami,Y., Ono,T., Fukagawa,T., Shibahara,K. and Nakayama,T.
TITLE Essential role of chromatin assembly factor-1-mediated rapid
nucleosome assembly for DNA replication and cell division in
vertebrate cells
JOURNAL Mol Biol Cell 18 (1), 129-141 (2007)
PUBMED 17065558
REMARK GeneRIF: Depletion of CAF-1p150 and p60 led to delayed S-phase
progression concomitant with slow DNA synthesis, followed by
accumulation in late S/G2 phase.
REFERENCE 4 (bases 1 to 6440)
AUTHORS Sanematsu,F., Takami,Y., Barman,H.K., Fukagawa,T., Ono,T.,
Shibahara,K.I. and Nakayama,T.
TITLE Asf1 is required for viability and chromatin assembly during DNA
replication in vertebrate cells
JOURNAL J Biol Chem 281 (19), 13817-13827 (2006)
PUBMED 16537536
REFERENCE 5 (bases 1 to 6440)
AUTHORS Caldwell,R.B., Kierzek,A.M., Arakawa,H., Bezzubov,Y., Zaim,J.,
Fiedler,P., Kutter,S., Blagodatski,A., Kostovska,D., Koter,M.,
Plachy,J., Carninci,P., Hayashizaki,Y. and Buerstedde,J.M.
TITLE Full-length cDNAs from chicken bursal lymphocytes to facilitate
gene function analysis
JOURNAL Genome Biol 6 (1), R6 (2005)
PUBMED 15642098
COMMENT VALIDATED REFSEQ: This record has undergone validation or
preliminary review. The reference sequence was derived from
JAENSK010000020.1.
On Sep 23, 2021 this sequence version replaced NM_001008677.3.
##Evidence-Data-START##
Transcript exon combination :: SRR13267652.9862.1,
SRR13267658.12141.1 [ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA103992290, SAMEA103992323
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-175 JAENSK010000020.1 5610319-5610493
176-303 JAENSK010000020.1 5610822-5610949
304-436 JAENSK010000020.1 5613459-5613591
437-554 JAENSK010000020.1 5614284-5614401
555-658 JAENSK010000020.1 5615857-5615960
659-755 JAENSK010000020.1 5617960-5618056
756-840 JAENSK010000020.1 5619773-5619857
841-934 JAENSK010000020.1 5620850-5620943
935-1004 JAENSK010000020.1 5621571-5621640
1005-1096 JAENSK010000020.1 5621725-5621816
1097-1259 JAENSK010000020.1 5623261-5623423
1260-1664 JAENSK010000020.1 5624531-5624935
1665-1756 JAENSK010000020.1 5626394-5626485
1757-6440 JAENSK010000020.1 5626956-5631639
FEATURES Location/Qualifiers
source 1..6440
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="1"
/map="1"
gene 1..6440
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="chromatin assembly factor 1 subunit B"
/db_xref="CGNC:11983"
/db_xref="GeneID:418514"
exon 1..175
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
misc_feature 151..153
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="upstream in-frame stop codon"
exon 176..303
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
CDS 178..1878
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="CAF-1 subunit B; CAF-I 60 kDa subunit; chromatin
assembly factor I p60 subunit; chromatin assembly
factor-1p60; chromatin assembly factor 1, subunit B (p60)"
/codon_start=1
/product="chromatin assembly factor 1 subunit B"
/protein_id="NP_001008677.3"
/db_xref="CGNC:11983"
/db_xref="GeneID:418514"
/translation="
MKVITCEIAWHNKEPVYSLDFQHGTDGKINRLASAGVDTAVRVWKVEKGPDGKAIVEFLSNLARHTKAVNVVRFSPSGEVLASGGDDAVILLWKLNDSKELEPLAFQDEDEAQLNKENWTVVKTLRGHLEDVYDICWTSDGNYMASASVDNTAIMWDVVKGQKVSILNEHKSYVQGITWDPLGQYIATLSCDRVLRVYNTQTKRVAFNVTKMPSESGAEGEARSYRMFHDDSMKSFFRRLSFTPDGSLLLTPAGCVESGENVTNTTYVFSRNNLKRPMGHLPCPGKATLAVRCCPVYFELRQALNKGEVSQKSSPALLNLPYRLVFAVASEDSVLFYDTEQSFPFGYVSNIHYHTLSDISWSSDGAFLAISSTDGYCSFVTFEKDELGIPLKEKPQIHVRTSVVTEKKVKKSQPNKVISPGSRLTEGTSLSTPTLQPKTPVAAAKDLPSTPVGIKNVPVSSSEERKISQPASQSTKVNQPRRITLNTLQAWSKTPRRVNLIPLKPDTPASVYTDTVPVPPSSEQEHERPLPSDDSLQNPPASKRPRTEEMPLSVSAEDQIGCKPNK"
misc_feature 208..339
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 1"
misc_feature <214..1302
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="WD40 repeat [General function prediction only];
Region: WD40; COG2319"
/db_xref="CDD:441893"
misc_feature 223..369
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="WD40 repeat [structural motif]; Region: WD40
repeat"
/db_xref="CDD:293791"
misc_feature 367..486
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 2"
misc_feature 385..558
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="WD40 repeat [structural motif]; Region: WD40
repeat"
/db_xref="CDD:293791"
misc_feature 556..675
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 3"
misc_feature 571..681
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="WD40 repeat [structural motif]; Region: WD40
repeat"
/db_xref="CDD:293791"
misc_feature 682..801
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 4"
misc_feature 700..867
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="WD40 repeat [structural motif]; Region: WD40
repeat"
/db_xref="CDD:293791"
misc_feature 859..1014
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 5"
misc_feature 1228..1353
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: WD 6"
misc_feature 1339..1824
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="Chromatin assembly factor complex 1 subunit p60,
C-terminal; Region: CAF-1_p60_C; pfam15512"
/db_xref="CDD:464756"
misc_feature 1408..1620
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 1678..1875
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/note="propagated from UniProtKB/Swiss-Prot (Q5R1S9.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
exon 304..436
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 437..554
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 555..658
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 659..755
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 756..840
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 841..934
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 935..1004
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 1005..1096
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 1097..1259
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 1260..1664
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 1665..1756
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
exon 1757..6440
/gene="CHAF1B"
/gene_synonym="CAF-1P60; CAF-I p60; CAF-Ip60; CAF1P60"
/inference="alignment:Splign:2.1.0"
ORIGIN
acgcatgcgcggggcgggaaacgcgctcccgcgctggagctgggccgggccgggttgccggtaggggttgggggcgcgggcggccgttacagcggttggggctgaggggggaggcacgcagggcggccaagcgaacgatcagatgctttctgaaggatcagatgcagagcgtgtgatatgaaggtcatcacttgtgagatagcttggcacaacaaggagcctgtgtacagcttggacttccagcatggaactgatgggaaaatcaaccgactggcctctgcaggtgtggacacagccgtccgggtatggaaagtggaaaaaggaccggatggaaaagctatcgtggagttcttgtccaatctcgcccgccataccaaagcagtaaatgtcgtgcgcttctctcccagtggtgaagtcctcgcatctggtggagatgatgctgttattttattatggaagctgaatgatagcaaagaattggaaccactagcttttcaggatgaagatgaagctcagctcaacaaggagaactggacagttgttaaaactttaagaggccacttagaagatgtgtatgatatttgttggacctcagatgggaattacatggcatccgcctccgtagataacacggctataatgtgggatgtcgttaaaggacagaaggtttcaatattaaatgaacacaagagttatgtccaaggaataacctgggatcctctaggccaatacattgcaactctgagttgtgatagggttctgcgggtatacaacacgcaaaccaagcgtgtagcattcaacgttaccaagatgccatctgaatcaggagctgaaggagaggctaggagctatcggatgtttcatgatgacagcatgaagtcatttttccgtaggctcagttttactcctgatggctccttactactcactccagctggctgtgttgaatcaggagaaaatgtgacaaacacaacatatgttttctccagaaataatcttaaaaggcccatgggtcatctgccctgtccgggaaaggcaactcttgctgttcgctgctgcccagtctactttgagttgagacaagcacttaataaaggtgaagtcagtcagaaatcatcgcctgccctattgaatctaccctaccgattggtgtttgctgttgcttcggaagactctgtgcttttttatgatactgagcagtctttcccttttggttacgtttctaacatacattatcacaccctcagtgacatttcatggtccagcgatggagcctttcttgctatttcttctacggatggatactgctcgtttgttacctttgagaaggatgaactgggaataccactgaaggaaaagcctcaaatacatgtcaggacttctgttgtcacagagaagaaagtgaagaagagtcagccaaacaaagtcatttccccgggctcaaggctgacagaggggacttctctgagtactcccactctccaacctaaaacgcctgtagctgctgctaaggacttgccttccacacctgttggcataaaaaatgttccagtctcatcttcagaggagaggaaaatcagccagccagccagccagagtactaaagtaaaccagcccaggaggattactctcaacactttacaagcatggagcaagacgccaaggagagtaaacttgataccactgaagccagatacaccagcctcagtatatacagatacagttcctgtacctccttcctcagagcaggaacatgagaggccattaccatctgatgacagtcttcaaaatcccccagcatctaaacgtcctagaactgaggaaatgcctctttctgtgtctgctgaagatcagatcggctgcaaaccaaacaaataacaactagtttcttagcagactcttcaatctgaacacagtgcagccatacctgagagctcatttctttctgcaaatgatgaatcctcaattcctgatgcgtatttgacatagtgctgtgagtaagctggcagtagtagacagttttcaggaatgtagctttacagaagaggaaataattctgaagcgtcttcaaagtgtagttctatttctggaagacagtgttcttccatgccacagttcaaggaaatcatgcaaatctggctatcaaaaagccatacactagcctaagtttttccatcaaaattccctgagttgatgtttataatgtatcgtgtcttccagcaacctgtctggcaaataagtagaacttcgaaggaattgagttcattctgatctgaccttgcttaagaaaaagggtggaaacaaaaaacctaaagtggtttcactggggcagcttggcttacacatcgtagcaatgtgctaaataatcagtgctcttcagtacctgtggaatggaagcaaacatcatatgctctgagtgcggcagcatgcagtatgactgacactgaaacagaaatcagaaactaaaactgcaaaaaaacaagaaagcagaaggaagacattttctgaagatctgttagaagcattaaacagtggaagaaagttatttgttgaacaaacaagtttctatatttacaaaaatgaagacatgagattttcttgaggcaccaagatttgaatttatacattaaaagaacacagaaggctttcccctgttcttttttctaagtcacattcctttggccaataaaataaaacatgaatccaatgtatattacacttttaaaagctgatttgtttattttttcctataattaaactacggcctatgattcgaaacaacaccaaacactttgaaagccactacactgaattttatctggtgtgtgaagactccagaagtagaatgctcagccacagcattccgagcttatccatttcattgcttttgcttaatatcagatatttatttttgagaagataatacttaaaatgtaaatagttgttctaattaacgataccttgtagacaaaaatttctcttgtgatttagcccgcacttttctatcatgtggagttctgaaacgcatgggaggggaaagctagaattcgtattaaacctctttgatttccccgtatttgattgtttttaaggtgtctaattagtgtttattttctttcagtttctaagcaagtgtacaaatacaccagacaatgcagaaatagaaatgtttcagaagtgtttcataaaaattccatgaagaagaaatgcttacagctatctatccccaaaaaagtttcaggcaaatggaatatgttaactacaatcaaacttcagcagaaattaataaccaaagtgtttgagggaactagctgtatttttctttaaatcactgagatgagggtagaactttaccagacccagccaaacctgggatttcttagagacgggagtgaaaagactattaccgagtaaagctacatctaaaacagtttttttccttgaaatttatagaaataaaatttgtagaggtctgaatttgtagctaaaaagcagatatttgtaactaacacagcagtgcatttgtgatggttggttttttttgtttttttttttctttgtatattgattgcactgcaaagggtcctttgagttcagacttacatttctgaatgctgattgcaaagctatcctgtttgttggtttgctttttcttgttttgtttcttcacaaaatgtattttgtcataaagtcataagctgtcataagcttctttctgttggaagctgtaagattgaatatgttattttagtgttaatgacataactggcctttgtggtctttgaatgtaattaattaccaaggtattagtcttcatttcatgccacatgcattctggtaacatctacatttgtttatatagttgctagcctattttctcactgccttgcaatgtaattggatcggtagatttattgacgctttcactgcttccatttggagattatttccacatcagcatctctgtcataatgctctatctggcattttttcttcctaataaggacttctttcattagttttagtttttcttctgctactataactttgtacttctcttttctattcattctctgttagttgtgttctactttgttgttaagaggcagcaaatcagttttaaacttgggaactgcagagctcttcactgggtgtccaaaacctgcacccagtcaaaaatattttgtagctgtgtatgtcagtatcctcccagcaaatcccctgaaagacaaaataaataggattttgataccaatttgtgttctccgaggtgaaagtagcacggtcttctgtacctgttggaccacaacgcacatggattactgagacttgtctctggagacaatggcggtaaggctggagggggctctgagcaacctggtggagctgtaggtgtcccctgttcattgcaggggagttggaccagatagccttgaggggtctcttccaactcaaaatggtgtcgctgctgtgcctgcttcatgaccatccccatttcttggtgctgattcatctgcctttttaccataagcctcagtttctgcttcagctgcctgtcacaaggaaggaaatcctcatgttatttttttacttcacttggaaagttgtcatcatccatcaagagtgcaaattttatttgcctgtttctctatggactcctaggaaaaagttatgcctcttttctcagaagcccaggctccccagcatgtgggcagttgcaggagcactgacttctgccagctcagtcatggacttttccatagcaaatatctacctcatagggagatacgtgttcggttgatgttgtgacttcaggctcaccttgagaccataggaaatcttaccagacacttttaactatttaaatgaaaggacttgatgcccaggtttatatcagaccgattgcttaccgaggacaccagagattctgctgataaaaagcaccttcaaaccttggaatcagctcagatgttcttcaggcaaaatcactgtaggtgcaatcatgaaccctattgttctgttgttgcctttcctgcttttcttgctttaaaggctgacatctctcaggcactggtcttctagtgagtcacgtaaggcttttggactctggatagctcagtcatttgtaatgccttgcagtcctttcagcttgtgcttcttgggggttccctctgtaagagtttacttggactgttagcatgcacatttcagtaaaatcattaactccttcccactatggaggaattgcccacttgcccttggagcttaaactatcccacacattttgagtatgaagaaggctacaataagagccttcaaactgcgttgggacctgatgtcacatgaaacggtcatcttcctccagaggctatgaaggcaggttctgtactttgacagagttcggagtatgtcctgaaacttccaagatgaatccacctccagtgcaaaaactctgctcagttgagtgtttctggttttgttttctgatgaaatagagtcttcctttggataccactcaagcaaccacctggagatttcttaaacactgtgttacagcaaaggcatcagaacttgccattctctgtagaagcagttccacaggtgctttccatgtgaaggattcagagcttctctctccaagtaaatgtaatcacatacatttttcagtgtgtttgacaccgtggaggcccagctggactgctgcatccagttctggcctttccagtacaagaaaaatacggaactcttggaggaactcttgtgaaaagccactgaaatgatgaaggggtctgaagcatctctctgtgaagaaaagttgagagagctagaactgttcaacttacagaagagagggcttgtgtgggacctcgtcagtgcctatcaatgcctgaagggaggttgttaagaagacggagccaggctcttcagtggtgccacaagaggataagagacaatgggcacaaactggaacacggttttcctttttcagttggttttctttacatgtactttacttacctgatcttttaaaaggtcatctttatgtcccaattttgcatattattttaaatgtgtctacgtatctgtaatcatttaccaatgccagaagaaaaagagttctttgttattttgatctattttgatctacgtgcccttttttctttggtagatgaataattgttcagttgtacgaagttcagcccatggttcagaaaagccttatctgcaggagcacagaaagtgagatgtgagaagaaagtacagattgcccacttgatgtcgctgttctaacaggattcctcctcttgcggttatggggaaccaggcagcaagaaaacaattttctttttaataatgggttgtaattgaatctatataacaaatataaattatcaccaaataaatcgattttattattttgacgagcttccttctaaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]