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Previous release (v1)
2026-01-17 21:54:12, GGRNA.v2 : RefSeq release 232 (Sep, 2025)
LOCUS NM_001001529 2624 bp mRNA linear VRT 01-MAY-2025
DEFINITION Gallus gallus prolyl 3-hydroxylase 1 (P3H1), mRNA.
ACCESSION NM_001001529 XM_417657
VERSION NM_001001529.2
KEYWORDS RefSeq.
SOURCE Gallus gallus (chicken)
ORGANISM Gallus gallus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes;
Phasianidae; Phasianinae; Gallus.
REFERENCE 1 (bases 1 to 2624)
AUTHORS Tang,H., Finn,R.D. and Thomas,P.D.
TITLE TreeGrafter: phylogenetic tree-based annotation of proteins with
Gene Ontology terms and other annotations
JOURNAL Bioinformatics 35 (3), 518-520 (2019)
PUBMED 30032202
REFERENCE 2 (bases 1 to 2624)
AUTHORS Ishikawa,Y. and Bachinger,H.P.
TITLE An additional function of the rough endoplasmic reticulum protein
complex prolyl 3-hydroxylase 1.cartilage-associated
protein.cyclophilin B: the CXXXC motif reveals disulfide isomerase
activity in vitro
JOURNAL J Biol Chem 288 (44), 31437-31446 (2013)
PUBMED 24043621
REMARK GeneRIF: An additional function of the rough endoplasmic reticulum
protein complex prolyl 3-hydroxylase 1.cartilage-associated
protein.cyclophilin B: the CXXXC motif reveals disulfide isomerase
activity in vitro.
REFERENCE 3 (bases 1 to 2624)
AUTHORS Burge,S., Kelly,E., Lonsdale,D., Mutowo-Muellenet,P., McAnulla,C.,
Mitchell,A., Sangrador-Vegas,A., Yong,S.Y., Mulder,N. and Hunter,S.
TITLE Manual GO annotation of predictive protein signatures: the InterPro
approach to GO curation
JOURNAL Database (Oxford) 2012, bar068 (2012)
PUBMED 22301074
REMARK Publication Status: Online-Only
REFERENCE 4 (bases 1 to 2624)
AUTHORS Ishikawa,Y., Wirz,J., Vranka,J.A., Nagata,K. and Bachinger,H.P.
TITLE Biochemical characterization of the prolyl 3-hydroxylase
1.cartilage-associated protein.cyclophilin B complex
JOURNAL J Biol Chem 284 (26), 17641-17647 (2009)
PUBMED 19419969
REFERENCE 5 (bases 1 to 2624)
AUTHORS Morello,R., Bertin,T.K., Chen,Y., Hicks,J., Tonachini,L.,
Monticone,M., Castagnola,P., Rauch,F., Glorieux,F.H., Vranka,J.,
Bachinger,H.P., Pace,J.M., Schwarze,U., Byers,P.H., Weis,M.,
Fernandes,R.J., Eyre,D.R., Yao,Z., Boyce,B.F. and Lee,B.
TITLE CRTAP is required for prolyl 3- hydroxylation and mutations cause
recessive osteogenesis imperfecta
JOURNAL Cell 127 (2), 291-304 (2006)
PUBMED 17055431
REFERENCE 6 (bases 1 to 2624)
AUTHORS Vranka,J.A., Sakai,L.Y. and Bachinger,H.P.
TITLE Prolyl 3-hydroxylase 1, enzyme characterization and identification
of a novel family of enzymes
JOURNAL J Biol Chem 279 (22), 23615-23621 (2004)
PUBMED 15044469
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence was derived from
JAENSK010000329.1.
On Sep 23, 2021 this sequence version replaced NM_001001529.1.
##Evidence-Data-START##
Transcript exon combination :: AY463528.1, SRR13267659.45659.1
[ECO:0000332]
RNAseq introns :: single sample supports all introns
SAMEA103992290, SAMEA103992323
[ECO:0000348]
##Evidence-Data-END##
PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP
1-482 JAENSK010000329.1 6360111-6360592
483-635 JAENSK010000329.1 6361062-6361214
636-825 JAENSK010000329.1 6361630-6361819
826-957 JAENSK010000329.1 6362345-6362476
958-1097 JAENSK010000329.1 6363330-6363469
1098-1187 JAENSK010000329.1 6363625-6363714
1188-1240 JAENSK010000329.1 6363834-6363886
1241-1362 JAENSK010000329.1 6364206-6364327
1363-1490 JAENSK010000329.1 6364423-6364550
1491-1586 JAENSK010000329.1 6364635-6364730
1587-1737 JAENSK010000329.1 6364804-6364954
1738-1855 JAENSK010000329.1 6365263-6365380
1856-1931 JAENSK010000329.1 6365562-6365637
1932-2072 JAENSK010000329.1 6365795-6365935
2073-2624 JAENSK010000329.1 6366025-6366576
FEATURES Location/Qualifiers
source 1..2624
/organism="Gallus gallus"
/mol_type="mRNA"
/db_xref="taxon:9031"
/chromosome="21"
/map="21"
gene 1..2624
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="prolyl 3-hydroxylase 1"
/db_xref="CGNC:3587"
/db_xref="GeneID:414142"
exon 1..482
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
CDS 39..2216
/gene="P3H1"
/gene_synonym="LEPRE1"
/EC_number="1.14.11.7"
/note="leprecan 1; leprecan-1 homolog; leucine- and
proline-enriched proteoglycan 1 homolog; leucine
proline-enriched proteoglycan (leprecan) 1"
/codon_start=1
/product="prolyl 3-hydroxylase 1 precursor"
/protein_id="NP_001001529.1"
/db_xref="CGNC:3587"
/db_xref="GeneID:414142"
/translation="
MALLLPLLPLLVWAAGPPGPLGPPEHSEPPLPAEPPDALFAAGAEAYARGDWPAVVLQMERALRARAAIRARSVRCRLRCANATAVVPTDGLEPTLHDLLFFRGLLRRAACLRGCGPTQPSRYRLGEELEREFRKRSPYNYLQVAYFKINKVAKAVAAAHTFFVANPEHVEMKQNLEYYQMMAGVRESDFADLEARPHMTEFRLGVRFYSEEQPAAAVLHLEKALQEYFVADTECRALCEGPYDYEGYNYLEYNADLFQAMTDHYMQVLSCKQGCVTELASQPGREKPLEDFLPSHFNYLQFAYYNNGNYEKAIECAKTYLLFFPNDEVMNQNLAYYTAVLGEDLARPIEPRKEIQAYRQRSLMEKELLFFSYDVFGIPFVDPDTWTPEEVIPKRLREKQKVERETAARISEEIGNLMKEIETLVEEKAKESAEMSKFIREGGPLVYEGASVTMNSKSLNGSQRVVVDGVLSAEECRELQRLTNAAASAGDGYRGKTSPHTPSETFYGVTVLKALKLGQEGKVPLQSAHLYYNVTEKVRHMMESYFRLEVPLHFSYSHLVCRTAIDEKQEGRSDNSHEVHVDNCILNAEALVCVKEPPAYTFRDYSAILYLNGDFEGGAFYFTELDAKTQTAEVQPQCGRAVGFSSGSENPHGVKAVTKGQRCAIALWFTLDPRHSERERVQADDLVKMLFRTEEVDLLQETSAEQEPTAATSTAGLHAAGKDEL"
sig_peptide 39..80
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="COORDINATES: ab initio prediction:SignalP:6.0"
mat_peptide 81..2213
/gene="P3H1"
/gene_synonym="LEPRE1"
/product="Prolyl 3-hydroxylase 1. /id=PRO_0000240355"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1)"
misc_feature 144..245
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: TPR 1"
misc_feature 282..284
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q6JHU8.1); glycosylation site"
misc_feature 444..545
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: TPR 2"
misc_feature 630..731
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: TPR 3"
misc_feature 918..1019
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: TPR 4"
misc_feature 1416..1418
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q6JHU8.1); glycosylation site"
misc_feature 1452..2048
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="Prolyl 4-hydroxylase alpha subunit homologues;
Region: P4Hc; smart00702"
/db_xref="CDD:214780"
misc_feature 1635..1637
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="N-linked (GlcNAc...) asparagine.
/evidence=ECO:0000255; propagated from
UniProtKB/Swiss-Prot (Q6JHU8.1); glycosylation site"
misc_feature 2139..2213
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite"
misc_feature 2202..2213
/gene="P3H1"
/gene_synonym="LEPRE1"
/note="propagated from UniProtKB/Swiss-Prot (Q6JHU8.1);
Region: Prevents secretion from ER.
/evidence=ECO:0000255|PROSITE-ProRule:PRU10138"
exon 483..635
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 636..825
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 826..957
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 958..1097
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1098..1187
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1188..1240
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1241..1362
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1363..1490
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1491..1586
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1587..1737
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1738..1855
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1856..1931
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 1932..2072
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
exon 2073..2624
/gene="P3H1"
/gene_synonym="LEPRE1"
/inference="alignment:Splign:2.1.0"
ORIGIN
gtggtctggtgcggagccgggcggccgcaggctcggccatggcgctgctgctgccgctgctgccgctgctggtctgggcggcgggaccgccgggaccgctgggaccgccggagcactccgagccccctctgccggccgagcccccggacgcgctcttcgctgccggcgccgaggcgtacgcgcggggggactggcccgccgtggtgctgcagatggagcgggcgctgcgggcccgcgccgctatccgcgctcgatcggttcggtgccgcctgcgctgcgccaatgccaccgcggtggtaccgacggatggactcgagccgactctccacgatctgctgttctttcgggggctgctgcggcgcgccgcctgtctgcggggctgcgggcccacccagccctcccggtaccgcctgggcgaggagctggagcgagagttccgcaagcggagcccctacaactacctccaggtcgcctacttcaagatcaataaggtggcgaaggccgtggctgcagcccacaccttctttgtggccaaccccgagcacgtggagatgaagcagaacctggagtactaccagatgatggcgggcgtcagggagtccgacttcgctgacctggaggccaggccccacatgacagagttccgcctgggtgtcaggttctacagcgaggagcagccggctgctgctgtcctgcacctggagaaggcactgcaggaatactttgtggcagacaccgagtgccgtgctctctgtgaggggccctatgactatgaaggctacaactacctggagtacaacgcagacctgttccaggccatgacagatcactacatgcaggtgctgagctgcaagcagggctgcgtcacagagctcgcctcgcagcctggccgggagaagcccctggaggatttcctgccctcacatttcaactacttgcagtttgcctactacaacaatgggaattatgaaaaagcgattgaatgtgccaaaacatacttgctcttcttcccaaatgatgaggtgatgaaccagaatttggcctattacactgctgtcctgggagaagacctggccaggcccattgagccccgaaaggaaatccaggcataccgccagcgaagcctcatggagaaggagctgctcttcttcagctacgacgtctttgggatcccatttgtggacccggacacgtggacacccgaagaggtgataccaaagaggcttcgagagaaacaaaaggtggagcgggagacagcggcgcgcatctccgaggagatcggcaacctgatgaaggagatcgagacgctggtggaggagaaggcgaaggagtctgcagaaatgagcaagttcatccgagaaggtggccccttggtgtatgagggagccagcgtcaccatgaactccaaaagcctgaacgggtctcagcgcgtggtggtggacggagtcctctcagctgaggagtgccgggagctgcagagactcaccaacgcagctgcctcggcaggggatggctatcgtgggaagacatcgcctcacacccccagtgagaccttctacggtgtcaccgtcctgaaggccctcaagctgggccaggagggcaaggtccccctgcagagtgcccacctctactacaacgtgacggagaaggtgcggcacatgatggagtcctacttccgcctggaggtcccgctccatttctcctactcacacctggtgtgccgcacagccatcgatgagaagcaagaaggccggagtgacaacagccacgaggtgcatgtggacaactgcatcctcaacgcggaggccctggtgtgtgtgaaggaaccaccagcctacaccttccgggattacagtgccatcctctacctcaatggggactttgaagggggagctttctacttcacggagctggatgccaagacgcagactgcagaggtgcagccccagtgtggccgtgccgtgggcttctcctctggctcagagaacccccacggggtgaaggctgtgaccaaaggccaacgctgtgccattgccctctggttcaccctggacccacggcacagtgagcgggagcgcgtgcaggcggacgatttggtgaagatgcttttcaggacggaagaggtggatttgctgcaggagacgagcgcggagcaggagccaacggctgccaccagcactgctggcttgcatgcagcagggaaggacgaactgtgacaatcctcatgcagggtcccagccctgccagggccagcaccaccagctccacaccatttgggacacagctgcagccacgcggctttggctgctcagccccgggctgcaggctgggccctactttgtggtgtggcatggagagctccatggctccgagcgctgctgcggaactgccaccaaccttgagatgagcagccagactttgggggtggataagggtgaggaacatggggaaaagggagggatgttttttagagttgaggacccagtgccatggtagcagtgtggggctgggagggctggagccacaccaaacgtgcctttctgctttgctctagcccactccccaccacggctatttaagtgccttctgcagaggactggtgaataaaggtgtcttttccaaaa
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]