 ver.2
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Previous release (v1)
ver.2
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Previous release (v1)
2025-10-31 12:51:48, GGRNA : RefSeq release 232 (Sep, 2025)
Summary:
Results:
Matches are highlighted with green background.
Overlapping matches are dark colored.
	
	
	aatgtggtgataaccagcatgctcagtcgtctctgggtttttttcagaggtattctgcgagccctcatccccatgtacagaagaaactgtgaactgctccagaaggtgtctcagtctcagcccatggcctatctgactgacttcactctacctgaggacctgaaagacttcctgtgcctcacataccctgatctaaagattgaagaagttaccaaagacctcttaaagggcacaagaggaaaaagaaagtccaaattttctctcctttccaagttgtttggggagaccgagcaacaagaagagattggagaaggggagagagatctgatgccaatattaagcgctggacattatgaagtttctagcctggacctcggagcagcagtttcacaacgacggaccgattactcagatgtgtcaccctatggactggacataaaggctatgcttcagcagtcttccaaaaccaccaaacagaaatctttggagcaacagatgaaattggacagctccagtaaagcatcattgtgtcagaagaggacgtttttgaagtcactgaagaagacgtcttcttttagaaacatggcagccctattaaag...
	
	position 820
	
	Synonym: fi11c01; nepro; si:dkey-22a1.3; wu:fi11c01; zgc:112065
	NM_001017650.2 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
	
	
	atcctgatcgcggagctggagcagctgcggggcaaaggagcgtcccgggtcggagatctgtacgaggatgagatgcgggagctgcggagacaggtggatcagctgaccggggaaaagagcaaagtggaggtggaccgggacaacctaggggaggacatcgagcgcctcaaggagagacttcaagaagagatgcttcaaagagaagatgctgagaacagcctccgcagcttcagacaggatgttgataacgcctctctggctcgtctggacctggagagaaaggtggagtccctgcaagaagagattgctttcttgaagaagcttcacgatgaggaacttgctgagatgcagatccagatgcaggagcagcatttgcagatcgatatggaagtgaccaaacctgacctgaccgctgctctgaaagacgtccggcagcagtacgagactctggcctccagaaacctgcaggagtctgaggattggtacaaatccaagtttgctgacctgtcagaagctgctgcccgaaacaatgaagccatccgtctggccaaacaggaggccaatgattaccgtcgccagctccaggctctcacttgtgac...
	
	position 699
	
	Synonym: cb28
	NM_131872.2 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
	
	
	atttacacgaggactccaaccatgtatcttgactttttgctgaagaaagatgcaaaacacatgcagcctgttccaaaaggttggacagctttcatctacaccctcgcaggttctttatgcactggcccagacaatgatttgcggacaatagagccacaccacacggtggttttggaaggtggtgactgcgtcagaatggaaaacaaggctgctgaggactctcactttgtgttaattgctggcgaacccattaatgagcctgtagttcagcatgggccctttgtcatgaacacacaagaagagattgacaagaccatctcagactacagatcagccactaatggatttgagagagcaaaagtctggcgatcaaagattggtcaacagttttaaagtgtcttcaagatccttctctgagggaatatatctactttggtgcctttaccttcagcttcagcagctccgaacatacattaggccagggatcactaaacttgttcctggtggtctggtgtcctggagattttagctccaaccctaatcaaacacacctgaacaagcgaatcaaggtcttactaggtatacttgaaacacccaggc...
	
	position 1128
	
	Synonym: zgc:92778
	NM_001002550.2 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
	
	
	taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaaacaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
	
	position 456
	
	
	NM_001441599.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaaacaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
	
	position 460
	
	
	NM_001386665.2 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaaacaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
	
	position 469
	
	
	NM_001441601.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	taataatgatgtggaaactttggttctgagtaaaacagaaggatcggctgctctcttttgcagacggctgaaatatcgagtaaaaactgatgaaacatcagatcaaagttcatcagatactgacacagaagatgagcttcccatctccacatctccaactcctggtgaagacttcatcatgcgaatacacacaggagaagcgccctatgtctgtgaactctgtggtaaagcgttcaaacgtaaacactggcttaaagaacacttttacatccatactggtgtcaaacgcaagcgcaagaagagattgagctgtgatcagtgtgaaatgaagtttgagtgctcctctgttcttcaaggtcatttaaataagcacagaggcgagaggccgttcgcctgcgttcagtgcgacaaaacctacttcaatcaacatgatcttaaacaacacctcagagactgtcattcagaaaaaaagcacggctgctatttgtgtggaaatgaattttctcgccgctctttactgcagaaacacatgcggatccacacaggagagagaccttactcctgtccacactgtgagaagactttcccctataaatacag...
	
	position 473
	
	
	NM_001441600.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	gagagcgaccagattcctgtccacaacatcaaatgcatcacactcttccatccgcaccagaaatgcaactgcagtttagtggttgcggcacgtggtccgtatatcttctggtgcttactgctgatctccaaagctggtctgaatgttcacaattcccacatcacgggtcttcattccacccctatcatatccatgacggcttgccacaataatgggactgttttaacatgctcactagatgggaaggttaagaagctaacgactgttttcacagacctagctgtcgagttcaagcaagaagagattgttctgcctgaaggagtcgcgggtcgacggatacacggtatatcaatcagtccaaacagtgcctacttggctgttctctccaatgagggtatgaacaatggcttccatcctgtcgctctcaactaccaggtacagttcatcacctttaagactccagatgaagcggcagctaagatgcttgatgctcactgtctctttagaaactctgatttgctggatttgttacgatggcggatactaaaagacaaaagcatcccttcggcctacgagaataatctagaagagaagctgcaa...
	
	position 1359
	
	
	XM_691843.10 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	AUTHORS Saito S and Shingai R. TITLE Evolution of thermoTRP ion channel homologs in vertebrates JOURNAL Physiol Genomics 27 (3), 219-230 (2006) PUBMED 16926268 aaactcacaacaaacagggaattgataagatcctaaaaccaccaccatgaacgagaaggacattgaggagggcggagtggccgtgatgccgaaagatctaagctggattccaactttcttcaagaagagattgtgcacaacgtttgtggaggactccttcagtaacggaggtctgtgtcagtgcggggcggcacgagaccatcacccatcagtggcactgggcgataacttcagcacagcagtggtcagtcagtggttcagcactcagcactcctctgaacagcccactgacgcttatggagaattggacttcaataacagtaggaaaagagacagctactttctgcgtctgtccagcaccacagatcctgccaaagtgtttgacctgatgaaggagcactggaagctgcaacagcctaacctggtggtgt...
	
	position 121
	
	Synonym: TRPM4b1; trpm4c
	NM_001282153.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
	
	
	agacagacagaaggatggatggatgggtagatagatggatggatggatgggtggacagacaaacagacagacaaagagaaggatggatggatggatgtgtagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatgtagaaatacatagatggatgggtagagtgatggacagatgttcagtagatgaatagatagatgggtagatgcatacagttatgtataaatggcacattagtagataagggtaaacagatgacaagaagagattgatcaagctttaagactgaataagagtcatatagaagagtctaataaatagagagaaggttctagggttagctggatggacggatggatgattcaccattagacatgtgggagcttgatagatgagtatgaatggacagcggcacttttctgtaacactgttgactgttatcttatacttgtttcccccatcttctacatgtttcctaaacagcaggaagaaccggccgacaccagggtggagtatagactcactggagcagtgtcacatttaggaagcaaactgttttctgga...
	
	position 2842
	
	
	XR_012383012.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	agacagaaggatgggtagatggatggatggatagacagacagacagaaggatggatggatgggtagatagatggatggatggatgggtggacagacaaacagacagacaaagagaaggatggatggatggatgtatagatagatagatagatagatagatagatagatagatgtagaaatacatagatggatgggtagagtgatggacagatgttcagtagatgaatagatagatgggtagatgcatacagttatgtataaatggcacattagtagataagggtaaacagatgacaagaagagattgatcaagctttaagactgaataagagtcatatagaagagtctaataaatagagagaaggttctagggttagctggatggacggatggatgattcaccattagacatgtgggagcttgatagatgagtatgaatggacagcggcacttttctgtaacactgttgactgttatcttatacttgtttcccccatcttctacatgtttcctaaacagcaggaagaaccggccgacaccagggtggagtatagactcactggagcagtgtcacatttaggaagcaaactgttttctgga...
	
	position 2961
	
	
	XR_012383011.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	ttaaactttttttccaaatacaaacatcattttgccacggcaggacatgttgttggaggaattgctatcggagctgcagttttatctggagttggagttggagctgctgctggagctggtttagcagctttttgtgctggagtaggaagtgtttcagttgctggagctgctgttggaggtgttgttggaggtgttgttggaggtgttgctgctagcaaatatgaggaagaaataaagtggaagaagagaagaagagaagaagaagagagagaacaacaagttgacaaaaaaatacaagaagagattgagagagcaataaaggagattgatgagagattcagagaagaaatggtagctaaaaatcttaaagcagagaaacagagtgaggaagaacagagaagacaagagaaacaaagactagaggagattaagagagtaagagaaaagacagaggagagaatcagagcagaaattgaagctaaaaagcagagagacggagtaaggaagaacagagaagacgagagaaacaaaaacaagaggagttagagtgataaaagagacagaggagagagtcagagcagaaaatgaggctaaattaaa...
	
	position 2350
	
	
	XM_017354872.4 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	and polyA evidence [ECO:0006239]" /db_xref="GeneID:799647" /db_xref="ZFIN:ZDB-GENE-061214-2" ORIGIN // gcagttcctccttcccggctgttatggctgtaccgcacacacacagagcaccgtgaactgaaaactcacaacaaacagggaattgataagatcctaaaaccaccaccatgaacgagaaggacattgaggagggcggagtggccgtgatgccgaaagatctaagctggattccaactttcttcaagaagagattgtgcacaacgtttgtggaggactccttcagtaacggaggtctgtgtcagtgcggggcggcacgagaccatcacccatcagtggcactgggcgataacttcagcacagcagtggtcagtcagtggttcagcactcagcactcctctgaacagcccactgacgcttatggagaattggacttcaataacagtaggaaaagagacagctactttctgcgtctgtccagcaccacagatcctgccaaagtgtttgacctgatgaaggagcactggaagctgcaacagcctaacctggtggtgtcagtg...
	
	position 182
	
	Synonym: TRPM4b1; trpm4c
	XR_012387707.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
	
	
	gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
	
	position 3223
	
	
	XM_009297091.5 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
	
	position 3267
	
	
	XM_009297090.5 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
	
	position 3336
	
	
	XM_073939341.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	gaagaggcccgggaacgttgggccgctgaagctgtacgcatccaagaacttcagcagcacggagtgaaggagacagagcgactcaatgccagcttggtggctctgcatcaagaaaactccagtctgcaggaagagctccagcaaacagacaaactgtcagaaaccatgctggagctaaagcagctgctggacaaaactgagggcgaacgggacgctgcacgggaagagatcaccgctgtgaaattccagatgagcacagagagcatgtctctcaagcaccaaatgaagagtcttcaagaagagattgacggtttgaaagatcagctagacacagagaggaagaagaaatcagagctggaggccaaattatccgaactagagggagcgaatgtggaatactctcgtctgattgaggagaaggactcgcacattacttactgtgagactttgctgcgtgagagcgagtctgagacacagcaactgcaggaaagagcatcaagatccaaagaggctcttagtgatgtagagaaggagagggaagaattgaagcagaaattggatcaagtgttgatggagactcagaaccagcatctccgcatg...
	
	position 3435
	
	
	XM_068216950.2 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
	
	position 6841
	
	
	XM_073928168.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
	
	position 6880
	
	
	XM_073928167.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
	
	position 6883
	
	
	XM_073928166.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
	
	
	ttgcgggtggagaaaaagacaaatataaagctttaacgtgagtttatcagtgtgcctgattttacgtatgtattcagaagtcttaatggaccccgtgggaatgttactttaaatgcataacacaaaaaaattacagtcgttaagaatcgtgggaactttgaacttaaacctaatatggaaacgctattattaagttgcgccctgataagatatagcgccccctgtctgtggcactactgtataactctgtagcctctaccctccagtgccatgcagaccttcacattcagaggtcaagaagagattgtgagttcaataatgtaaatagagttttagtagagtataatatattatggaatcgttaaacactattttgttgatgataaataagtatggctttttaagagagagatttctttcctttggatttttttttttcgtggcaaggttattgtcggtttaaggattactttgtcaagatgctttttttgtttcgttatttccactgaaattgctcagattaagattaggaaagggaacactacgcaaacttgtggggcgtcatttgtgaaacacaatattaattttgtttgtgtgtgt...
	
	position 6922
	
	
	XM_073928165.1 -
	
Danio rerio (zebrafish) -
	
NCBI -
	
UCSC
	 
 
Data Export:
Maximum 10000 results can be retrieved as Tab-delimited text or JSON format.
Debug Info:
Redirect URI : https://ggrna.dbcls.jp/en/dr/seq%3acaagaagagattg
lang         : en |
div          :  |
spe          : dr |
query_string : seq:caagaagagattg |
format       : html |
download     : 
0.000 | 0.000 | search_start;
0.074 | 0.074 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=0&format=json
0.111 | 0.037 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caagaagagattg)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.114 | 0.002 | cgi_end;
 
GGRNA ver.2 by
@meso_cacase at 
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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