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2024-11-24 10:22:33, GGRNA : RefSeq release 226 (Sep, 2024)

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Results:

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Danio rerio ring finger protein 122 (rnf122), mRNA. (1585 bp)
gene_synonym="si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122" /protein_id="NP_001314745.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 608..748 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 103
Synonym: si:ch1073-392o20.1
NM_001327816.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio guanylate cyclase activator 1d (guca1d), mRNA. (558 bp)
gcap4; si:rp71-1p14.1" /codon_start=1 /product="guanylate cyclase activator 1d" /protein_id="NP_001011661.1" /db_xref="GeneID:494573" /db_xref="ZFIN:ZDB-GENE-040724-231" /translation="MGNNHASLDDILAEDMHHWYNKFMRESPSGLITLFELKSILGLQGMNEDANSYVDQVFCTFDMDRDGYIDFVEYIAAISLMLKGEINQKLKWYFKLFDQDGNGKIDKDELETIFTAIQDITRNRDIVPEEIVALIFEKIDVNGEGELTLEEFIEGAKEHPEIMDMLKILMDLTPVLLIIVEGRQK" misc_feature 82..228 /gene="guca1d" /gene_synonym="gcap4; si:rp71-1p14.1" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have...
AA_position 107
Synonym: gcap4; si:rp71-1p14.1
NM_001011661.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio B cell receptor associated protein 31 (bcap31), mRNA. (1138 bp)
protein_id="NP_956386.1" /db_xref="GeneID:368488" /db_xref="ZFIN:ZDB-GENE-030616-63" /translation="MSLQWTAVATFLYAEVLAVLLLCVPFISPKRWSKFFKSRLVTAITSYGNTAFIVIICILVFLLIDAFREVRKYSVAEKVDLSNNPVAIEHIHMKLFRAQRNEYIAGFALLLCLLLRRLATLLSQQATLMASHEAFQKQAEGANDAAKKYMEENEKLQEKLRQAGIEVPEVGGKAKGGMEEDKKNLKEEVRQLKDELDATKKALQKSDSDVKAMKKQAENLTTEYDRLLEEHARLQAKCDAQQDKKSD" misc_feature 106..>426 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389" /note="Bap31/Bap29 transmembrane region; Region: Bap31; pfam05529" /db_xref="CDD:461673" misc_feature 837 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:...
AA_position 193
Synonym: si:bz30i22.4; si:rp71-30i22.4; zgc:56389
NM_200092.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:153322 (zgc:153322), mRNA. (776 bp)
id="NP_001038898.2" /db_xref="GeneID:751723" /db_xref="ZFIN:ZDB-GENE-060825-73" /translation="MDDENWETDAVMVATAPAPAELPEVKLFGRWSCEDVQVSDMSLQDYIAVKENYAKFIPHSAGRYAAKRFRKAQCPIVERVTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 119..679 /gene="zgc:153322" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(119..121,206..214,218..229,326..328,338..340) /gene="zgc:153322" /note="S9 interface [polypeptide binding]; other site" /db_xref...
AA_position 201
NM_001045433.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nicotinamide riboside kinase 2 (nmrk2), transcript variant 2, mRNA. (1277 bp)
codon_start=1 /product="nicotinamide riboside kinase 2 isoform 2" /protein_id="NP_001004618.2" /db_xref="GeneID:447879" /db_xref="ZFIN:ZDB-GENE-040912-44" /translation="MDAMVNTVKGWMENPVKFARSHGVSVSTTSDPDSDIHILIVEGFLLYNYKPLIDVYNKCFYVTIPYEECKRRRSTRTYTVPDPPGLFDGHVWPMYLKHRTEMENSSLDIQYLDGMSSKDELYNQLYEDIQNSLLNIL" misc_feature <264..581 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /note="Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate...
AA_position 118
Synonym: itgb1bp3; zgc:103408
NM_001004618.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio trafficking protein particle complex subunit 6B (trappc6b), mRNA. (954 bp)
complex subunit 6B; trafficking protein particle complex 6b" /codon_start=1 /product="trafficking protein particle complex subunit 6b" /protein_id="NP_001006029.1" /db_xref="GeneID:450008" /db_xref="ZFIN:ZDB-GENE-041010-122" /translation="MADEALFQFLHSEIIQYVNSAETGESENGRCVSKLENMGFRVGQGLIERFTQDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVLQDNKFRLLTQLSAGKQYLEHAPKFLAFTCGLVRGALSNIGVKSIVTAEVSVMPACKFQVMIQKM" misc_feature 211..669 /gene="trappc6b" /gene_synonym="zgc:103464" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 58
Synonym: zgc:103464
NM_001006029.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ribosomal protein S5 (rps5), mRNA. (702 bp)
S5" /protein_id="NP_775339.1" /db_xref="GeneID:192297" /db_xref="ZFIN:ZDB-GENE-020419-12" /translation="MAEDWEAAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQCPIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGENPLQILVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSYNSYAIKKKDELERVAKSNR" misc_feature 85..645 /gene="rps5" /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(85..87,172..180,184..195,292..294,304..306) /gene="rps5" /gene_...
AA_position 193
Synonym: chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03
NM_173232.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio four and a half LIM domains 5 (fhl5), mRNA. (1180 bp)
gene="fhl5" /gene_synonym="zgc:92375" /codon_start=1 /product="four and a half LIM domains protein 5" /protein_id="NP_001004112.1" /db_xref="GeneID:445475" /db_xref="ZFIN:ZDB-GENE-040822-3" /translation="MSTERFDCHYCKDTLLGKKYILKEDTQYCTKCYENLFANCCEVCSLPIGCNCKDLSYKDRHWHENCFKCAKCSRSLVDKPFAAKDELMLCTECYSHEYSSKCSTCKKTVMPGSRKMEYKGNSWHETCFLCQRCQQPIGTKSFIPKDNNYFCVPCFEKQFAYQCCACKKAITTGGVTYHDKPWHRECFTCIGCKRQLAGQRFTSRENYPYCLDCFSNLYAKKCVGCTKAITSLAGAKYISFEERQWHSECFTCMQCSVSLVGRGFLTQRDDILCTDCGREK" misc_feature 146..322 /gene="fhl5" /gene_synonym="zgc:92375" /note="The first LIM domain of Four and a half LIM...
AA_position 84
Synonym: zgc:92375
NM_001004112.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ADP-ribosylation factor-like 10 (arl10), mRNA. (1170 bp)
protein_id="NP_001373165.1" /db_xref="GeneID:560654" /db_xref="ZFIN:ZDB-GENE-091204-51" /translation="MLSPPFVCHPLEGNRARVFQNKPGRITCTGQQKQQLSVCRARAAPALAPGALMVVLRHFSVAFSAAMAAVGTALFIALNLFYKRRVWTPESEYFTFREEEEERSEKQVLVLGLDGAGKSSVLQGLSGAGYRRGCRPTRGFNFISLNTPACQLDFLEIGGGEDLRMYWADYLRRTNILVYVVDSSDRSRLPQAKDELHRLLKAETDLPVVVLGNKQDKPDAVSVPELREALSLSSVADQRKLFLLAAQSGSDGLSRTCSLQKIQDLLLKLV" misc_feature 480..971 /gene="arl10" /gene_synonym="si:ch211-153m12.1" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A...
AA_position 193
Synonym: si:ch211-153m12.1
NM_001386236.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nicotinamide riboside kinase 2 (nmrk2), transcript variant 1, mRNA. (1341 bp)
isoform 1" /protein_id="NP_001314713.1" /db_xref="GeneID:447879" /db_xref="ZFIN:ZDB-GENE-040912-44" /translation="MKFIIGIGGVTNGGKTTLTGRLIKNLPNCCVVHQDDFFKPQDQIELGEDGFRQWDVITALDMDAMVNTVKGWMENPVKFARSHGVSVSTTSDPDSDIHILIVEGFLLYNYKPLIDVYNKCFYVTIPYEECKRRRSTRTYTVPDPPGLFDGHVWPMYLKHRTEMENSSLDIQYLDGMSSKDELYNQLYEDIQNSLLNIL" misc_feature 139..630 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /note="Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form...
AA_position 179
Synonym: itgb1bp3; zgc:103408
NM_001327784.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio si:ch211-40k21.5 (si:ch211-40k21.5), transcript variant 2, mRNA. (1052 bp)
id="NP_001373467.1" /db_xref="GeneID:100332117" /db_xref="ZFIN:ZDB-GENE-131121-368" /translation="MEAAEQQGSESETEYPKKPRHPAKIKNDQRYNKGRINIGDEIKRWKQLKREKGFKSNIELATYLLDRAFSELSEDRSSISSISPISIPPRRQPQKSIRPALQSEATWTDSLSSDQLSDSETLPGPDSKSAKVEVLEFGYEHPPYQTIKQEEPEQQLEDESGVDIMIASTAQSYGFVPHCSSSTDEENEMQWDEIKDELAETAQRLEERLEAMRSLSVRAPKPMSVTKEKDKEVKWTNKSSLKTLFRTCHQCGESVLEFKTLTSGSLSWIQWECSKGHLMCLFHNYNTT" exon 231..342 /gene="si:ch211-40k21.5" /inference="alignment:Splign:2.1.0" exon 343..468 /gene="si:ch211-40k21.5" /inference="alignment:Splign:2.1.0" exon 469..615 /gene="si:ch211-40k21.5" /inference="alignment:...
AA_position 195
NM_001386538.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio si:ch211-40k21.5 (si:ch211-40k21.5), transcript variant 1, mRNA. (1213 bp)
id="NP_001373466.1" /db_xref="GeneID:100332117" /db_xref="ZFIN:ZDB-GENE-131121-368" /translation="MMDHGYALAARMEQIMPIRRNYTNGIRRQRDGEKQINRVNIGIAYSKWKALKEKKGFRNDADVACYLLDRAFSELSEDRSSISSISPISIPPRRQPQKSIRPALQSEATWTDSLSSDQLSDSETLPGPDSKSAKVEVLEFGYEHPPYQTIKQEEPEQQLEDESGVDIMIASTAQSYGFVPHCSSSTDEENEMQWDEIKDELAETAQRLEERLEAMRSLSVRAPKPMSVTKEKDKEVKWTNKSSLKTLFRTCHQCGESVLEFKTLTSGSLSWIQWECSKGHLMCLFHNYNTT" exon 392..503 /gene="si:ch211-40k21.5" /inference="alignment:Splign:2.1.0" exon 504..629 /gene="si:ch211-40k21.5" /inference="alignment:Splign:2.1.0" exon 630..776 /gene="si:ch211-40k21.5" /inference="...
AA_position 198
NM_001386537.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio integral membrane protein 2Cb (itm2cb), mRNA. (1823 bp)
gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:fj35c02; zgc:66349" /note="integral membrane protein 2C" /codon_start=1 /product="integral membrane protein 2Cb" /protein_id="NP_956274.1" /db_xref="GeneID:335863" /db_xref="ZFIN:ZDB-GENE-030131-7806" /translation="MVKISFQQVTVQKPEKENDGDKEEIQMPYSHKDELVLPVRSKKSPFSGLWCVVLGLVIFLSGLIMASVCLYRYYFNPQIPEDSFFHCRMMYEDPVFAPLLGRQELEEKVGIYLDDNYEQISVPVPDFGSGDPADIIHDFHRGLTAYYDIALDKCYVIELNTTIVMPPRNLWELLVNVKRGTYLPQTYMIQEEMVVTGRVRNLRQLGPFIHRLCYAKETYRLRRRSGQRRIDKRETKNCHTIRHFENTFAVETKICERLLL" misc_feature 456..734 /gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:...
AA_position 32
Synonym: fj35c02; itm2c; wu:fj35c02; zgc:66349
NM_199980.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio rhophilin associated tail protein 1-like (ropn1l), mRNA. (992 bp)
AKAP-associated sperm protein; ropporin 1-like" /codon_start=1 /product="ropporin-1-like protein" /protein_id="NP_001004624.1" /db_xref="GeneID:798354" /db_xref="ZFIN:ZDB-GENE-040724-235" /translation="MPLSETMYCAQQINIPPALPNMLKQFTKAAIRTQPRDVLQWAADYFSALSKGQDLPVKKRLELPVATQKTDTGLTPGLLKILHQQLTSKETVTKDELLPKWKALHLPVEQLDTILALGNFSENINWMQFFALACSALGGSITSALKHACEILTEDPEGGPAQIPFHMFRSLYTYLAHLDGEIPEEQIDSFLHSLEGQAQSQGGMVQPSNFTSLHTAEK" misc_feature 221..349 /gene="ropn1l" /gene_synonym="asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773" /note="dimerization/docking (D/D) domain found in ropporins; Region: DD_ROP;...
AA_position 94
Synonym: asp; bZ1F1.7; si:rp71-1f1.7; zgc:101773
NM_001004624.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LRAT domain containing 1 (lratd1), mRNA. (1966 bp)
Splign:2.1.0" CDS 173..955 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="family with sequence similarity 84, member A" /codon_start=1 /product="protein LRATD1" /protein_id="NP_956912.1" /db_xref="GeneID:393590" /db_xref="ZFIN:ZDB-GENE-040426-1247" /translation="MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEELDDRSQSDSFKDNNSPSKDGPVARNEIEYTAFCCQECIYSKLRENEDLNVYSVKTLLTMCKPGDLLELVANAQPPHWAIFEGEDQVIHLYKGEIRKDSLFEISCGRQARIVNNRYRYRPLPADLVMQNASGHVGLSSGEICWTNSESFAAWCRFGKREFKAGGEVHSVEQRYFLKVHLSESTAHTLMFRSLEEMIRERRRVDASGILKELSLVTGKE" misc_feature 527..769 /gene="lratd1" /gene_synonym="fam84a; zgc...
AA_position 26
Synonym: fam84a; zgc:63724
NM_200618.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 183 (rnf183), mRNA. (1858 bp)
EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF183" /protein_id="NP_001070136.1" /db_xref="GeneID:767730" /db_xref="ZFIN:ZDB-GENE-060929-1090" /translation="MGDGREKPQSSRKGSNAKPKLDSKGSLNLGSSEQRQRADKPVRRSRSNDTENRRREASRGRERDRRDEGRPQRGRSEEGRRRGHNHEPGNRAWDKEPPKDELQDTECIVCFCNFDNVFKTPKLLSCGHTFCLECLARINVNSPEIKTLTCPICREVTEIRHGRDLPHLLNNEAIFRQLPSEMQRALSVRFKRSKGKLVLKNPPTNNSIKTTLNLPVSKKKEEQAGNNAIGAIEEGLGQATMINVGRPPNRMRGRMRRVMYSSQCYYAVVAVIISITVALMMVGIFTFVVMPNLQRPITKPLQNQTGSSAVQADSSP" misc_feature 490..654 /gene="rnf183" /gene_synonym="zgc:153310" /note="RING finger...
AA_position 99
Synonym: zgc:153310
NM_001076668.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio small nuclear ribonucleoprotein polypeptide A (snrpa), mRNA. (1342 bp)
inference="alignment:Splign:2.1.0" CDS 43..888 /gene="snrpa" /gene_synonym="fc19d01; wu:fc19d01; zgc:77810" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_955965.1" /db_xref="GeneID:324121" /db_xref="ZFIN:ZDB-GENE-030131-2841" /translation="MAGQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGATPAMAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAMPPGGMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK" misc_feature 61..327 /gene="snrpa" /gene_...
AA_position 23
Synonym: fc19d01; wu:fc19d01; zgc:77810
NM_199671.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nucleophosmin 1a (npm1a), mRNA. (1598 bp)
synonym="npm1; sb:cb487" /note="nucleophosmin 1; nucleophosmin 1a (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin 1a" /protein_id="NP_955460.2" /db_xref="GeneID:266985" /db_xref="ZFIN:ZDB-GENE-021028-1" /translation="MDLEQMGPQTFLYGCELKAGKDITFNPEDDDYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEITPPVVFRLRTGSGPVHISGQHLVIMGGDQSFDEEEEEEEEEETVMTSKKRPALSTPKPSKKMKMDEEDDDDDDEDDDDEDDDEEDESEEESPVKEKKAPAKPKTPTQNGKGPKPSTPAKQTPQKGKKEQTPKTPQTPRTLADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQTVK" misc_feature 167..466 /gene="npm1a" /gene_synonym="npm1; sb:cb487" /...
AA_position 48
Synonym: npm1; sb:cb487
NM_199428.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio mitochondrial ribosomal protein L46 (mrpl46), mRNA; nuclear gene for mitochondrial product. (1114 bp)
GENE-040718-224" /translation="MAAPFARVCQPLWRKITTAILSKGVRNVSSTRQQWAKLNVKTAGAASPWALHGAVCLQRLPVVSQDRSPIEEDFMELMRQIEFEKSLLADHEVKVLEDTARMSRKQDEDYDSDEEDDYRNKKIVTAQDLEDVWEQNLKQFQPAPRLQGDGETDMSSLERCLADSLVLLVQKDVGSQKIWLLPQIEWQTGETLRQTAERALASLPGADLKATFLGNAPCGFYKYKYPKDVQKEGLVGAKVFFFKAVMSSQKHLPLEKNTFAWVKKDELQEFLKPEYLKQVRRFIMTL" misc_feature 176..508 /gene="mrpl46" /gene_synonym="fk88g07; wu:fk88g07; zgc:92810" /note="39S mitochondrial ribosomal protein L46; Region: MRP-L46; pfam11788" /db_xref="CDD:432074" misc_feature 476..877 /gene="mrpl46" /gene_synonym="fk88g07; wu:fk88g07; zgc:92810" /note="...
AA_position 264
Synonym: fk88g07; wu:fk88g07; zgc:92810
NM_001002518.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio purine nucleoside phosphorylase 5b (pnp5b), mRNA. (1154 bp)
stop codon" CDS 51..935 /gene="pnp5b" /gene_synonym="zgc:101740" /EC_number="2.4.2.1" /codon_start=1 /product="purine nucleoside phosphorylase 5b" /protein_id="NP_001004628.1" /db_xref="GeneID:447889" /db_xref="ZFIN:ZDB-GENE-040912-54" /translation="MTPDSATGYSYEECTATADWLLKRAPERPLVGIVCGSGLGGLAKMLKDELVINYCDIPNFPQSTVHGHAGKLVFGTLKGKPCVCMQGRFHLYEGYAIQKTTMPIRVFKLMGVETVILTNAAGGLNQDFKVGDIMIIKDHINIPGFAGHNPLVGANDDRFGVRFPCMSDAYDRDLQQLVRAVADELDFSVFMRDGVYSVLGGPSFETIAECRALRQLGADAVGMSTVHEVIVARHCDMRVLALSLITNKAVMDYQSEKKANHEEVLETGALRAKQMEKLVSTVVSRIPNTPTHCS" misc_feature 84..899 /gene="pnp5b" /gene_synonym="zgc...
AA_position 47
Synonym: zgc:101740
NM_001004628.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 24 (rnf24), mRNA. (1603 bp)
CDS 332..781 /gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24" /protein_id="NP_001007353.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 557..718 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" exon 475..517 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
NM_001007352.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio cytochrome b5 reductase 1 (cyb5r1), mRNA. (1711 bp)
db_xref="GeneID:336553" /db_xref="ZFIN:ZDB-GENE-030131-8497" /translation="MSYAMSTTVAVTVGVVLVSTAGLLGYYYFNRKRKILITLIDPSEKYKLRLVDKEIISHDTRRFRFALPSPEHVLGLPVGKHVYLSARIDGNLIVRPYTPVSSDDDKGFVDLVVKIYFRDVHPKFPEGGKMSQYLESLRIGDVIDFRGPGGLLEYKGAGRLDIQADKKAPAETKTVKSLGLIAGGTGITPMLQLIRDITKNPNDTTTCSLLFANQTEKDILLKDELEEIQARHSDRFKLWFTVDRAPADWEYSQGFISAEMIQDHLPPPSDDSMILMCGPPPMIQFACNPNLDKLGYRQSQRFAY" misc_feature <174..971 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="nitrate reductase [NADPH]; Region: PLN02252" /db_xref="CDD:215141" exon 75..221 /gene="cyb5r1" /gene_synonym="dia1; wu...
AA_position 222
Synonym: dia1; wu:fb13e02; wu:fb15h03; zgc:56042
NM_200189.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio programmed cell death 2 (pdcd2), mRNA. (1410 bp)
db_xref="GeneID:393370" /db_xref="ZFIN:ZDB-GENE-040426-1236" /translation="MAANTLKESNTHSDVVLGFLEEAESWQLLSDQFPSKVGGRPAWLSQSDLPAVSELQCEECKLPAVFLLQVYAPVTEYDRCFHRTLFVFCCKTPACYTRNDSKCFKVFRSQLPRKNEFYPFNPPPDEKPEQPVHDAQVLGSGLKLCRLCGCLGQKACSRCHSVTYCCKEHQTTDWKQRHKKECLAEASQVSGELNSFLFPEWELVTEPEVIPAKDELQESPSLDQENIASLNSGLEDSELESMALHETLDSKVFQKFKQRIANEPQQVLRYCRGGSPLWVTAEHVPREEEVPECTCGAKRLFEFQIMPQLLNHLKVDSTDASIDWGTVAIYTCAESCDQGNKYSPEFIWKQDFSGDQAE" misc_feature 534..647 /gene="pdcd2" /gene_synonym="zgc:63685" /note="MYND finger; Region: zf-MYND; pfam01753" /db_xref="CDD:460312" misc_feature 852..1154 /gene="...
AA_position 213
Synonym: zgc:63685
NM_001045138.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio proteasome 26S subunit, non-ATPase 8 (psmd8), mRNA. (1448 bp)
subunit, non-ATPase, 8" /codon_start=1 /product="26S proteasome non-ATPase regulatory subunit 8" /protein_id="NP_001002131.1" /db_xref="GeneID:415221" /db_xref="ZFIN:ZDB-GENE-040625-136" /translation="MASVLKETAGLYETLKAEWNKKNPNLNKCGELLSKLKISLLELNFLPTTGTKLTKQQLILARDVLEIGALWSILKKDIPSFERYMAQLKCYYFDYKDELPESAYRHQLLGLNLLFLLSQNRVSEFHTELERLSAKDIQTNVYIRHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDTLLDTIRDEIAGCIEKAYEQIQFNEATRVLFFSSPKKMTDYAKKRNWTQSPDGYYSFSTQHQKTEEVTIPSTELAKQVIEYARQLEMIV" misc_feature 394..738 /gene="psmd8" /gene_synonym="fa93g07; fb17c09; fb49a10; wu:fa93g07; wu:fb17c09; wu:fb49a10; zgc:86762" /note...
AA_position 96
Synonym: fa93g07; fb17c09; fb49a10; wu:fa93g07; wu:fb17c09; wu:fb49a10; zgc:86762
NM_001002131.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio low density lipoprotein receptor-related protein associated protein 1 (lrpap1), mRNA. (2075 bp)
gene_synonym="wu:fi20f07; wu:fi22c06" /codon_start=1 /product="alpha-2-macroglobulin receptor-associated protein precursor" /protein_id="NP_958463.2" /db_xref="GeneID:333939" /db_xref="ZFIN:ZDB-GENE-030131-5871" /translation="MQLLILVSLFAVGAMAGKYSKEMNEKNASDKSNSQVEFRIAKLNQVWEKAIRMQLAPVRLSELHSDLKIQEKDELQWKKLKAEGMDEDGEREAKLRRNFNIILAKYGMDGKKDTRTLDSNRLKDHEVKVGDTFDDPKLDKLWNKARTSGKFSDEELQTLHREFQHHKDKIHEYNIVMDTVSRTEEIHKNVISPLEGDVKENVLHQKHTDLKQRMRDLNQGFERLRKITHEGYTDDSEFREPRVIELWEMAKRSNLSKDELDSLKEELRHFETKVEKHQHYQEQLELSHQKLKHVEALGDEDHIMRNKEKYNTLAEKAREMGYKMKKHLQDLTNKLSKNGLQHNEL" sig_peptide 116..163 /gene...
AA_position 72
Synonym: wu:fi20f07; wu:fi22c06
NM_201306.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio C1GALT1-specific chaperone 1 (c1galt1c1), mRNA. (3444 bp)
CDS 241..1194 /gene="c1galt1c1" /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375" /codon_start=1 /product="C1GALT1-specific chaperone 1" /protein_id="NP_955961.2" /db_xref="GeneID:324052" /db_xref="ZFIN:ZDB-GENE-030131-2772" /translation="MMSEGSSFMKGMIFGGIFCLIMSFFETFNPGTHSEGHNHLHHHLKPVSKDELQKLSESQMSEFAMQVRVYCLIMVTPKLLVHWATANDTWSKHCDKSVFYTSEASKALDAVDLQEQDEWTRLRKAIQHAYENAGDLHWFFIARPTTFAIIENLKYLVLDKDPSQPFYIGHTEKSGELDYVEYDSGIVLSYEAMRRLMEVFKDEDKCPERGRALWKMSEEKQLATCLKYSGVFAENGEDAQGKGLFNKKSVSSLISDSISQNPGDVVEACCSDMAITFAGMSPSQIQVLMYGVYRLRPYGHDFHDSLTFLPPKDSDND" ORIGIN // REFERENCE 1...
AA_position 49
Synonym: fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375
NM_199667.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio si:dkey-27h10.2 (si:dkey-27h10.2), transcript variant X4, mRNA. (631 bp)
codon_start=1 /product="uncharacterized protein si:dkey-27h10.2 isoform X4" /protein_id="XP_021326893.1" /db_xref="GeneID:100150349" /db_xref="ZFIN:ZDB-GENE-090313-296" /translation="MYPNIIILVIAVLCITGVVVYCCLQKNSRKYSVDLHPKKEDAQIPLSTVDAEVFDTTSEKDLQTFAPVEPVKDPDIGKEAEKPEEGKEIPDVKQENQQNLSTPEATVIPNDKKDELTVVDLTDAEPAISTKTSMESLDDTLNENNSNNTRIEGIANGYEFIEIFLDGPL" ORIGIN //...
AA_position 113
XM_021471218.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio expressed sequence CO360592 (gb:co360592), transcript variant X5, mRNA. (1304 bp)
protein C11orf65 homolog isoform X1" /protein_id="XP_021330228.1" /db_xref="GeneID:558891" /db_xref="ZFIN:ZDB-GENE-071015-3" /translation="MPYCTELQPCDWLIRNLHERAVGQVYLIKWPFSTSEDPIFKLTEDTKKTEFHHCKIRRQQDVARKKKMRKIEWMRKMYAEGRTGHSKTAQQLQNSPETLLDSFETSDFEQEVDELLAWTRALDFDDYINEWRNLGTSRCYIVDKDELSVDVQRDFGICKISPLRQDESQHLDLI" misc_feature <818..1135 /gene="gb:co360592" /note="chromosome 11 open reading frame 65 and homologs; Region: C11orf65; cd21090" /db_xref="CDD:411042" ORIGIN //...
AA_position 144
XM_021474553.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:171971 (zgc:171971), mRNA. (2038 bp)
alignment:Splign:2.1.0" CDS 84..1256 /gene="zgc:171971" /codon_start=1 /product="uncharacterized protein LOC569690" /protein_id="NP_001103298.1" /db_xref="GeneID:569690" /db_xref="ZFIN:ZDB-GENE-070928-37" /translation="MCDHGDGDAEASSSSTFRPSFALGNVKGLPGRISHNPPPPGRLTSLRSRDLTLGGFKKKTFVPNVHSVRKSKDELQEEPHSAPKKERRDREDRHRERRQRREKPQTIQSHSIFEQGPADTYRKLGNWGSSNLTACDPALVTKCIKKEKNNTEDDDNAILQKLTRDDFLDDPGLKNDPKQRPIRLPLHQSCNFLSTDAASSFKEETTSDNPRHSPRVEQKYPQTSRSSSAGPEQPTVGELFQQLSVSDKEELLFIQLPDTIPGQPKTSSPEKTRKDCKAEEKRTAHIKAIDKPDKSTVPVLSDFSEGLIGKLQIRKSGKVQLVMGNVTLDVSEGAAFSFLQQLVCVRLSEGLTGDMTVLGNITHKLACSPDFETLLQEAKIA...
AA_position 72
NM_001109828.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio required for meiotic nuclear division 5 homolog B (rmnd5b), mRNA. (1430 bp)
RFVTYGHQSEERLDELLNNVCELRSRLLAYGVQDADLSVLHQTMAQCCKEIKETVQMLASRHKDIHGSVSKVGKAIDRNFDAEVSAVVAENVWDSPERQKYLSETIVEHLYRQGMLSVAEDLCQESGVVIDMSMKQPFLELNRILEALRTQDLRPALEWAVTNRQRLLDLNSTLEFKLHRLYFISLLNGGIGKQQEALQYARHFQPFASQHQRDIQILMGSLVYLRHGIENSPYRSLLETDQWAEICNIFTRDACALLGLSVESPLSVSFASGCMALPVLMNIKQVIEQRQCSGVWTHKDELPIEIDLGKKCWYHSVFACPILRQQTSESNPPMKLICGHVISRDALNKLTNAGKLKCPYCPMEQNPSDAKQIYF" misc_feature 514..948 /gene="rmnd5b" /gene_synonym="zgc:73277" /note="CTLH/CRA C-terminal to LisH motif domain; Region: CTLH; pfam10607" /db_xref="CDD:402305" misc_feature 1054..1230 /gene="rmnd5b" /gene_synonym="zgc...
AA_position 315
Synonym: zgc:73277
NM_200774.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio acetylserotonin O-methyltransferase (asmt), mRNA. (1268 bp)
db_xref="ZFIN:ZDB-GENE-080220-43" /translation="MAEEAELYPKKILEYMEGFLVSKTLFSACELGVFELLQSACLSAGQVSAALSTSVDGTERLLSACVGLQLLNTHTHTDRTVLYSNTEMSNVFLVKSSPKSLYHSIEYSSRTIYLCWHYLSDAVRDGKNQYEKAFGVNSKDLFEALYRSDDEMVKFMHLMNSVWNICGRDVITAFDLTPYKTICDLGGCSGALAKQCVSAYPESSVTIFDLPRVVQNSQKHFMTDQDPRIAFCEGDFFKDELPQADLYILARILHDWTDQRSVELLTKIYQSCRPGGALLLAEALLHEDDSGPLTVQLYSLNMLVQTEGRERKASEYTRLLNAAGFTHVHTHTTGKIYDAVLAIK" misc_feature 63..326 /gene="asmt" /gene_synonym="hiomt; zgc:171885" /note="dimerization domain; Region: dimerization2; pfam16864" /db_xref="CDD:465287" misc_feature 375..1004 /gene="asmt" /gene_synonym="...
AA_position 238
Synonym: hiomt; zgc:171885
NM_001114909.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio BRCA2 and CDKN1A interacting protein (bccip), mRNA. (1087 bp)
GeneID:541348" /db_xref="ZFIN:ZDB-GENE-050320-39" /translation="MASSAKRRAVETGQNPQDSDESSDEGLEDSGDDDSENSEEEVNEEVIVDFEAHTISDNDFHGIKTLLQQLFLKCHVNTSDLTDIIIQQNHIGSVIRQAEVPEDSDDEGDPDEVFGFISMVNLTERQGVECLEKLKDMILDQCVKCSTPDVQERMENLLQGNTQSVGLLLSERFVNVPPQIALPLHKQLQKEMAEAQRTNKPSGKCQFCLMISKTCKPLKKKSISAGDQAKDELLFVNDEEEFFYEQATVKFSYCVQDEADSCATGKWSYDDEPMKPFRTVMVIPMDRMDTIMQKMTDYLTV" misc_feature 63..191 /gene="bccip" /gene_synonym="mp:zf637-1-000774; zgc:110272" /note="propagated from UniProtKB/Swiss-Prot (Q5BJJ7.1); Region: Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite" misc_feature 204..791 /gene="bccip" /...
AA_position 230
Synonym: mp:zf637-1-000774; zgc:110272
NM_001013475.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nuclear factor I/Xb (nfixb), mRNA. (2893 bp)
Splign:2.1.0" CDS 119..1441 /gene="nfixb" /gene_synonym="zgc:136878" /codon_start=1 /product="nuclear factor I/Xb" /protein_id="NP_001035338.1" /db_xref="GeneID:678521" /db_xref="ZFIN:ZDB-GENE-060421-5000" /translation="MATEPFLVNEDPSRGPGIPECFVVSDSYRDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMTKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKPPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGSPLESTDGERLVKSPQCSNHGLCVQPHHIGVSVKELDLYLAYFVHTPESGQSDNSNQQGEADIKPPPNGHLSFQDCFVTSGVWNVAELVRVSQTPVATATGPNFSLADLDSPGYYNINLGRRSITSTPSTSSNKRKSIDDSEMESPVDDVFYSGRSPAPGASQPSGWPNDVDAVQHHLASMQERKIKHESDGVQFPYHAGSPRASASSLHFPSPSLIQQSS...
AA_position 77
Synonym: zgc:136878
NM_001040248.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio tripartite motif containing 35-28 (trim35-28), mRNA. (1662 bp)
product="tripartite motif containing 35-28" /protein_id="NP_001103174.1" /db_xref="GeneID:559351" /db_xref="ZFIN:ZDB-GENE-071004-19" /translation="MADSSDDDITDRPPLLETDLTCPVCKDIFKEPELLSCSHSFCKVCLEGSWKNQTKRQCPMCRKCCDGETPIPNRALHNACVSYKKERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVTLHPGHELVPTEQGVPFCKDELTMKIKILESKLDSFKRMKKRYKETITFIEGQTKEAENQIKQEFERLHQVLNEEEKTRLLALSREEDEKKQVVTEKIEAIGRDITGLAELIQSVKREMGAEDLTFLLNFQKLKRRTQWTGDDPRRVYGALINMALHVGALGYKIWESMQAHVTCLPVILDPNTASPWLSISPDFSSMQESRERQSFPDNPERFDPCVFVLGSEGFSSGRHRWEVRVADHPKWILGVCKESVVRKRKFTVTTTAGVWTIGLSKGVYNALTSPRTVLNLERRPETVRVKVNMEKGEVSFWDTGNNKHLCTFNDKFTGKLF...
AA_position 143
Synonym: zgc:171672
NM_001109704.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio nuclear factor 1 X-type-like (LOC110437879), transcript variant X3, mRNA. (1459 bp)
samples with support for all annotated introns" /db_xref="GeneID:110437879" CDS 276..866 /gene="LOC110437879" /codon_start=1 /product="nuclear factor 1 X-type-like isoform X3" /protein_id="XP_021333010.1" /db_xref="GeneID:110437879" /translation="MDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKAPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGSPLESTDGERLVKSPQCSNHSLCVQPHHIGVSVKELDLYLAYFVHMPGQWVTLSFFPPTATDMLI" misc_feature 279..389 /gene="LOC110437879" /note="Nuclear factor I protein pre-N-terminus; Region: NfI_DNAbd_pre-N; pfam10524" /db_xref="CDD:463134" misc_...
AA_position 49
XM_021477335.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio leucine zipper protein 2 (luzp2), transcript variant 2, mRNA. (2669 bp)
protein_id="NP_001092725.1" /db_xref="GeneID:100137118" /db_xref="ZFIN:ZDB-GENE-060503-278" /translation="MKFIGAVYLLFLLPALSFNSSYEGLEKKLKEVFTERTGILRHLSKTSKELDSIKGNLQSLKNEDAVPKKDVQRILELSHKQRDEMKSLQAALQKQLDDAAERAEKQQATIKFLKMEMEKKTKIIKDLQQENKSLKNKLLSGNKLCDIHAEESKKIQAQLKELRYGKKDLIFKGQQLMDLENKLKVAKDELEKAALDKESQLKALRDTVHICFSSVLHSQTASLHRFPATPTNLLRYSALVNNSRVTFQQPHMKVGSDCSHNQTESSSVMKKTFGHSQSKTPEQNGQGQARTAEESVKTDGELKKTQSDKHN" misc_feature 22..>636 /gene="luzp2" /gene_synonym="si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1" /note="Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB...
AA_position 187
Synonym: si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1
NM_001099255.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ribosomal protein S5 (rps5), transcript variant X1, mRNA. (730 bp)
protein_id="XP_021337005.1" /db_xref="GeneID:192297" /db_xref="ZFIN:ZDB-GENE-020419-12" /translation="MAEDWEAAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQCPIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGENPLQILVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 115..675 /gene="rps5" /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(115..117,202..210,214..225,322..324,334..336) /gene="rps5" /gene_...
AA_position 193
Synonym: chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03
XM_021481330.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio nuclear factor 1 X-type-like (LOC110437879), transcript variant X2, mRNA. (1802 bp)
with support for all annotated introns" /db_xref="GeneID:110437879" CDS 596..1210 /gene="LOC110437879" /codon_start=1 /product="nuclear factor 1 X-type-like isoform X2" /protein_id="XP_021333009.1" /db_xref="GeneID:110437879" /translation="MYSPYCLTQDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKAPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGSPLESTDGERLVKSPQCSNHSLCVQPHHIGVSVKELDLYLAYFVHMPGQWVTLSFFPPTATDMLI" misc_feature 620..733 /gene="LOC110437879" /note="Nuclear factor I protein pre-N-terminus; Region: NfI_DNAbd_pre-N; pfam10524" /db_xref="CDD:463134" misc_...
AA_position 57
XM_021477334.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio sarcolemma associated protein b (slmapb), mRNA. (1950 bp)
slmap; zgc:55817" /note="upstream in-frame stop codon" CDS 55..1185 /gene="slmapb" /gene_synonym="slmap; zgc:55817" /codon_start=1 /product="sarcolemma associated protein b" /protein_id="NP_956471.1" /db_xref="GeneID:393146" /db_xref="ZFIN:ZDB-GENE-040426-809" /translation="MEEQKLKDPINKVSLIKDELSRSTVEASESEKVIQRLNQELQEANEQANSSKHKCVELQGLLEEEKRANKQQAEESAKQMKVLQTQLQKLQEEMENLRDQKDSAVFSMRQETHAAQEEVQVLRRTMEKTAAEREHEVSALKGNLATLTSELEKWQQAANKYERELESVQASHQQQNQQRDRATKQQAGELEKVQKDCESLRRDCASLRSEREQLADKQQKEKASLQNENSSLRSEKEQLQKKQQQLEKELDSSKRQNTSLSNTVKSLEKTQADLEKRLSVLQEEHQRDNGQLEQSNSRIKELQKEYEEMQAELSGLRGKFENAEE...
AA_position 17
Synonym: slmap; zgc:55817
NM_200177.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:153896 (zgc:153896), mRNA. (1480 bp)
ALFLSVNGKPLSERRTYNKLLLISFDGFRWDYDQDVDTPNLDKLVKEGVKAKYINPPALTMTSPSHFTTITGRWIEDHGVVHNLMFNDTTGLRVPHKATLKKSEWWDNGVLPLWITAQKQGLKTASFYYPGGGVNYSGQAVNRFLVENHGSPDDNETEWQQNIDTVMGWFAKEDFDFVTLYYGEPDNVGHAVGPETHERRKIIEQIDRTIGYLRESIHKNALTDHLNVILTSDHGMTTIKNATEVKEIVLANYISLLKLTRFDLLDYGGFGMITPREGKEQEVYNALKNAHPNLTVYRKDELPENFHMKKHARIQPIVLLADLGFNINSRLILDINKGDHGFSSEEMDMKMFFRAFGPDFSPNFLAEPFDSVSIYPLMCKLLGVVPEANNGSLSDTKGMLVDNFDAGGSSGRIQVSFTLLVVSTVILTLI" sig_peptide 2..52 /gene="zgc:153896" /gene_synonym="si:ch211-225l4.2" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 80..1177 /gene="zgc...
AA_position 308
Synonym: si:ch211-225l4.2
NM_001045194.2 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio C-type lectin domain family 4 member F-like (LOC110437865), mRNA. (651 bp)
includes similarity to: 1 Protein" /db_xref="GeneID:110437865" CDS 1..651 /gene="LOC110437865" /codon_start=1 /product="C-type lectin domain family 4 member F-like" /protein_id="XP_021327940.1" /db_xref="GeneID:110437865" /translation="MSQPIYASINTNSRLKMDRSSHRNQTVIVLSVFIYTNNKNCAKDRRQLVTNISNLTGAKDELTNLLMERDQLIKQLQIFGQEAVWFYYQSSFYYLSNETKSWTESRRCCKDRGADLIIVNNKQEQDFIMKITGNNEFWIGLTDSDEEGNWKWVDGSILTSGFWASSGSITEPNGRETENCAVTHLKKHPELKGWLDVACDDAHQWICEKSILPVTI" misc_feature 253..627 /gene="LOC110437865" /note="C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific...
AA_position 59
XM_021472265.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio zmp:0000000924 (zmp:0000000924), transcript variant X2, mRNA. (1383 bp)
codon_start=1 /product="macrophage mannose receptor 1-like isoform X2" /protein_id="XP_068074683.1" /db_xref="GeneID:101884643" /db_xref="ZFIN:ZDB-GENE-130530-927" /translation="MRAEMSEDIYNNVIKTESERMNRERVEMAVVIYESTDCVRDYDFRTESNTQQPIQNTGSDSVKTRFSRAAPVCLVLLCFLLLTAVIVLSVFIYTNNTNYTEERRQLITNITNLTGAKDELTNLLYDKDQLIKWLQIFGQEAGWFYYQSSFYYFSNETKSWTESRRYCRDKRADLIIINNKQEQDFIMKITCNNEFWIGLTDIKKEGTWKWVDGSILTSGFWASSGSINEPNGGKTENCAVTHLKKHPELIGWLDVTCDDAHQWIFIVLSVFIYTNNKNCAKDRRQLVTNISNLTGAKDELTNLLMERDQLIKQLQIFGQEAVWFYYQSSFYYLSNETKSWTESRRCCKDRGADLIIVNNKQEQDFIMKITGNNEFWIGLTDSDEEGNWKWVDGSILTSGFWASSGSITEPNGRETENCAVTH...
AA_position 117
XM_068218582.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio nuclear factor 1 X-type-like (LOC110437879), transcript variant X1, mRNA. (3874 bp)
annotated introns" /db_xref="GeneID:110437879" CDS 2607..3281 /gene="LOC110437879" /codon_start=1 /product="nuclear factor 1 X-type-like isoform X1" /protein_id="XP_021333004.1" /db_xref="GeneID:110437879" /translation="MATESYLVHEGPHRAPGISECFLVPESYRDEFHPFIEALLPHVRAFSYTWFNLQARKRKYFKKHEKRMSKDEERAVKDELLGEKPEIKQKWASRLLAKLRKDIRPEFREDFVLTITGKKAPCCVLSNPDQKGKIRRIDCLRQADKVWRLDLVMVILFKGSPLESTDGERLVKSPQCSNHSLCVQPHHIGVSVKELDLYLAYFVHMPGQWVTLSFFPPTATDMLI" misc_feature 2691..2804 /gene="LOC110437879" /note="Nuclear factor I protein pre-N-terminus; Region: NfI_DNAbd_pre-N; pfam10524" /db_xref="CDD:463134"...
AA_position 77
XM_021477329.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SERPINE1 mRNA binding protein 1a (serbp1a), mRNA. (2317 bp)
db_xref="GeneID:335449" /db_xref="ZFIN:ZDB-GENE-030131-7389" /translation="MPGHLQEGFGCVVTNRFDQLFDDEEDPFEVLKQAEKKKKDATVPGAAKTAAQAAKQPKKESQKERRNPLPDKKEETQAPVPLKKDGMRKMGRRPEQQGQQGSVPQQQAGQGEGRPPADRRPDRRPPRERRFDKPADEKPAEGGEFSVEKTMGDRPFRGRGGPRGGRGGRGRGVGRTDGFDSRGKREFDRHSGSDRSLKAEEKRGGSGSHNWGTVKDELSELDQSNVTEDTPEGEEHPPADSENKENEVEEAKEEGPKEMSLDEWKAQQDKERAKVEFNIRKANEGADWKKGYVLHKSKAEDASADDAAGDHHFRKPANDITSQLEINFGDLGRPGRGRGGPRGGRGGRGAAAATRPPRERRPDKVGGVSVPNVDDPEAFPALA" misc_feature 86..>358 /gene="serbp1a" /gene_synonym="hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc...
AA_position 223
Synonym: hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc:55489
NM_214714.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio potassium channel, subfamily K, member 18 (kcnk18), mRNA. (1176 bp)
GENE-100405-2" /translation="MSVSQKRQFTGRCSTLFWRLFPHVFLILSLVLYAVLGALVFRAIEYTNPRNESEEILSIVQKVMEIVQNHTDASEQKHLINKAKYILDDYCYEKERDHGWTFFASLFFCCTVFTTVGYGRIYPLTSKGKVACVLYAMVGIPLMLLVISDVGDLLAVLLSKAYTRLNLFFRRWIGHQSWRLQSHEKTSALPQAQADTDGTYKFNQDVVVLETTNNQQVIQTRSSIRRGSFQLRNNKEIFDRIIVRESFRIKGTLSKSCSCPELDRVPTPKDELFNDIGQEMEQLDVPLLVILLMVFAYMVICSQILKCWEKQMDHSDAFYFTFITLTTIGFGDIVPEHPKFFMVTFLFIITGMAIMSMAFKLGQSQIVCFYRRCIKSLSMGKVRIHNDLNNN" misc_feature <298..462 /gene="kcnk18" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" misc_feature 865..1101 /gene="kcnk18" /note="Ion channel; Region:...
AA_position 269
NM_001190307.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio leucine zipper protein 2 (luzp2), transcript variant 1, mRNA. (1542 bp)
protein_id="NP_001108187.1" /db_xref="GeneID:100137118" /db_xref="ZFIN:ZDB-GENE-060503-278" /translation="MKFIGAVYLLFLLPALSFNSSYEGLEKKLKEVFTERTGILRHLSKTSKELDSIKGNLQSLKNEDAVPKKDVQRILELSHKQRDEMKSLQAALQKQLDDAAERAEKQQATIKFLKMEMEKKTKIIKDLQQENKSLKNKLLSGNKLCDIHAEESKKIQAQLKELRYGKKDLIFKGQQLMDLENKLKVAKDELEKAALDKESQLKALKDTVHICFSSVLHSQTASLHRFPATPTNLLRYSALVNNSRVTFQQPHMKDIPKVPRITTTSKLPVSSAVMRRESTGPKDCQMVKVGSDCSHNQTESSSVMKKTFGHSQSKTPEQNGQGQARTAEESVKTDGELKKTQSDKHN" misc_feature 248..>862 /gene="luzp2" /gene_synonym="si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1" /note="Septal ring factor EnvC, activator...
AA_position 187
Synonym: si:ch211-243k12.1; si:dkey-239j7.1; si:dkeyp-86e4.1
NM_001114715.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:172182 (zgc:172182), mRNA. (1308 bp)
xref="ZFIN:ZDB-GENE-080204-56" /translation="MTSPQKIPIDLKMMIKDTKQDMDDVHQALEKLRSLSQEERTEAEVLRSRIDEQSTLICILKRRADEMLLRCQALEKINAELENLRANVQVELENERKKSELLEQRFMDLASNHRELINFKNEYKSQNAKLEKENERLRKENEALFSEEVQEKEETILKLTQELKDLAEQHKILENEYQEKTTGFQIKLKELMNLHRIKEASLKNELSDTQKQLKTAVEMCAELDLKLRQTQVKESMRETDTQERLEKLIKEKDELIDLSVQRGKIIRDKQVEIQELERKRQEAENGRRHAEDRFEKEAAAVNSELRVKELREALERAEFSCNELKKEFEAFKKHSCELLEKEKELNCKLRHMII" misc_feature <201..1025 /gene="zgc:172182" /gene_synonym="boip; ccdc89" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" exon...
AA_position 252
Synonym: boip; ccdc89
NM_001114566.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 122 (rnf122), transcript variant X1, mRNA. (719 bp)
si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122 isoform X1" /protein_id="XP_005172552.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 397..534 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 102
Synonym: si:ch1073-392o20.1
XM_005172495.5 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio calreticulin 3b (calr3b), mRNA. (2917 bp)
ADLNQADMHGDSQYYIMFGPDICGYSTKKVHVIFNYKGQNHLIKKDIKCKDDELTHLYTLILNPDQTYEVKIDNEKVESGSLEEDWDFLPPKKIKDPEAKKPEDWDDRAKIDDETDTKPEDWDKPENIPDPDAKKPEDWDEDMDGEWEPAMIPNPEYKGEWKPKQIDNPNYKGAWVHPEIDNPEHVPDDQIYKFDNIGVLGLDLWQVKSGTIFDNFFISDDVKEAEEFGNETWGATKGPEKKMKEEQEEKKRKEEEEKNKEQNTEAADEEEEDEGEEEEEEDETEEPQEDEGDEDVLQKDEL" sig_peptide 98..157 /gene="calr3b" /gene_synonym="calr3; calrl; id:ibd1087; wu:fc59g10" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 173..1096 /gene="calr3b" /gene_synonym="calr3; calrl; id:ibd1087; wu:fc59g10" /note="Calreticulin family; Region: Calreticulin;...
AA_position 414
Synonym: calr3; calrl; id:ibd1087; wu:fc59g10
NM_201465.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X1, mRNA. (1786 bp)
rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_005160122.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MIYLPVLSMTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 627..788 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 1786 /gene="rnf24" /...
AA_position 96
Synonym: zgc:103462
XM_005160065.5 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

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Debug Info:

Redirect URI : http://ggrna.dbcls.jp/ja/dr/aa%3aKDEL
lang : ja | div : | spe : dr | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.081 | 0.081 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=0&format=json
0.378 | 0.297 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.384 | 0.005 | cgi_end;

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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]