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2025-09-13 19:49:43, GGRNA : RefSeq release 231 (Jul, 2025)

Summary:

Results:

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Danio rerio zgc:153322 (zgc:153322), mRNA. (776 bp)
id="NP_001038898.2" /db_xref="GeneID:751723" /db_xref="ZFIN:ZDB-GENE-060825-73" /translation="MDDENWETDAVMVATAPAPAELPEVKLFGRWSCEDVQVSDMSLQDYIAVKENYAKFIPHSAGRYAAKRFRKAQCPIVERVTNSLMMHGRNNGKKLMAVRIMKHAMEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR" misc_feature 119..679 /gene="zgc:153322" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(119..121,206..214,218..229,326..328,338..340) /gene="zgc:153322" /note="S9 interface [polypeptide binding]; other site" /db_xref...
AA_position 201
NM_001045433.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio guanylate cyclase activator 1Ab.1 (guca1ab.1), mRNA. (2915 bp)
cyclase activator 1e" /codon_start=1 /product="guanylate cyclase activator 1Ab.1" /protein_id="NP_956950.1" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" /translation="MGDSSSMSATELSACKCHQWYRKFMTECPSGQLTFYEFKKFFGLKNLSEKSNAYVNTMFKTFDIDDDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA" misc_feature 113..499 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /note="Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]; Region: FRQ1; COG5126" /db_xref="CDD:444056" exon...
AA_position 108
Synonym: gcap5; guca1e; zgc:66243
NM_200656.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ribosomal protein S5 (rps5), mRNA. (702 bp)
uS7" /protein_id="NP_775339.1" /db_xref="GeneID:192297" /db_xref="ZFIN:ZDB-GENE-020419-12" /translation="MAEDWEAAPAVAETPEIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSSGRYAAKRFRKAQCPIVERVTNSMMMHGRNNGKKLLTVRIVKHAFEIIHLLTGENPLQILVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSYNSYAIKKKDELERVAKSNR" misc_feature 85..645 /gene="rps5" /gene_synonym="chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(85..87,172..180,184..195,292..294,304..306) /gene="rps5" /gene_...
AA_position 193
Synonym: chunp6933; fc74e05; fj57h03; wu:fc74e05; wu:fj57h03
NM_173232.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio B cell receptor associated protein 31 (bcap31), mRNA. (1138 bp)
protein_id="NP_956386.1" /db_xref="GeneID:368488" /db_xref="ZFIN:ZDB-GENE-030616-63" /translation="MSLQWTAVATFLYAEVLAVLLLCVPFISPKRWSKFFKSRLVTAITSYGNTAFIVIICILVFLLIDAFREVRKYSVAEKVDLSNNPVAIEHIHMKLFRAQRNEYIAGFALLLCLLLRRLATLLSQQATLMASHEAFQKQAEGANDAAKKYMEENEKLQEKLRQAGIEVPEVGGKAKGGMEEDKKNLKEEVRQLKDELDATKKALQKSDSDVKAMKKQAENLTTEYDRLLEEHARLQAKCDAQQDKKSD" misc_feature 106..>426 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:rp71-30i22.4; zgc:56389" /note="Bap31/Bap29 transmembrane region; Region: Bap31; pfam05529" /db_xref="CDD:461673" misc_feature 837 /gene="bcap31" /gene_synonym="si:bz30i22.4; si:...
AA_position 193
Synonym: si:bz30i22.4; si:rp71-30i22.4; zgc:56389
NM_200092.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio integral membrane protein 2Cb (itm2cb), mRNA. (1823 bp)
gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:fj35c02; zgc:66349" /note="integral membrane protein 2C" /codon_start=1 /product="integral membrane protein 2Cb" /protein_id="NP_956274.1" /db_xref="GeneID:335863" /db_xref="ZFIN:ZDB-GENE-030131-7806" /translation="MVKISFQQVTVQKPEKENDGDKEEIQMPYSHKDELVLPVRSKKSPFSGLWCVVLGLVIFLSGLIMASVCLYRYYFNPQIPEDSFFHCRMMYEDPVFAPLLGRQELEEKVGIYLDDNYEQISVPVPDFGSGDPADIIHDFHRGLTAYYDIALDKCYVIELNTTIVMPPRNLWELLVNVKRGTYLPQTYMIQEEMVVTGRVRNLRQLGPFIHRLCYAKETYRLRRRSGQRRIDKRETKNCHTIRHFENTFAVETKICERLLL" misc_feature 456..734 /gene="itm2cb" /gene_synonym="fj35c02; itm2c; wu:...
AA_position 32
Synonym: fj35c02; itm2c; wu:fj35c02; zgc:66349
NM_199980.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio LRAT domain containing 1 (lratd1), mRNA. (1966 bp)
Splign:2.1.0" CDS 173..955 /gene="lratd1" /gene_synonym="fam84a; zgc:63724" /note="family with sequence similarity 84, member A" /codon_start=1 /product="protein LRATD1" /protein_id="NP_956912.1" /db_xref="GeneID:393590" /db_xref="ZFIN:ZDB-GENE-040426-1247" /translation="MGNQLDRITHLNYSELPTGDPSGIEKDELRVGVAYFFSDEEEELDDRSQSDSFKDNNSPSKDGPVARNEIEYTAFCCQECIYSKLRENEDLNVYSVKTLLTMCKPGDLLELVANAQPPHWAIFEGEDQVIHLYKGEIRKDSLFEISCGRQARIVNNRYRYRPLPADLVMQNASGHVGLSSGEICWTNSESFAAWCRFGKREFKAGGEVHSVEQRYFLKVHLSESTAHTLMFRSLEEMIRERRRVDASGILKELSLVTGKE" misc_feature 527..769 /gene="lratd1" /gene_synonym="fam84a; zgc...
AA_position 26
Synonym: fam84a; zgc:63724
NM_200618.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nucleophosmin 1a (npm1a), mRNA. (1598 bp)
synonym="npm1; sb:cb487" /note="nucleophosmin 1; nucleophosmin 1a (nucleolar phosphoprotein B23, numatrin)" /codon_start=1 /product="nucleophosmin 1a" /protein_id="NP_955460.2" /db_xref="GeneID:266985" /db_xref="ZFIN:ZDB-GENE-021028-1" /translation="MDLEQMGPQTFLYGCELKAGKDITFNPEDDDYDHQLSVRMACVDPSTKDELNVVEIEGQDSEGQKVKAVLATLKPSTLPSVCLGGFEITPPVVFRLRTGSGPVHISGQHLVIMGGDQSFDEEEEEEEEEETVMTSKKRPALSTPKPSKKMKMDEEDDDDDDEDDDDEDDDEEDESEEESPVKEKKAPAKPKTPTQNGKGPKPSTPAKQTPQKGKKEQTPKTPQTPRTLADIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQTVK" misc_feature 167..466 /gene="npm1a" /gene_synonym="npm1; sb:cb487" /...
AA_position 48
Synonym: npm1; sb:cb487
NM_199428.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio four and a half LIM domains 5 (fhl5), mRNA. (1180 bp)
gene="fhl5" /gene_synonym="zgc:92375" /codon_start=1 /product="four and a half LIM domains protein 5" /protein_id="NP_001004112.1" /db_xref="GeneID:445475" /db_xref="ZFIN:ZDB-GENE-040822-3" /translation="MSTERFDCHYCKDTLLGKKYILKEDTQYCTKCYENLFANCCEVCSLPIGCNCKDLSYKDRHWHENCFKCAKCSRSLVDKPFAAKDELMLCTECYSHEYSSKCSTCKKTVMPGSRKMEYKGNSWHETCFLCQRCQQPIGTKSFIPKDNNYFCVPCFEKQFAYQCCACKKAITTGGVTYHDKPWHRECFTCIGCKRQLAGQRFTSRENYPYCLDCFSNLYAKKCVGCTKAITSLAGAKYISFEERQWHSECFTCMQCSVSLVGRGFLTQRDDILCTDCGREK" misc_feature 146..322 /gene="fhl5" /gene_synonym="zgc:92375" /note="The first LIM domain of Four and a half LIM...
AA_position 84
Synonym: zgc:92375
NM_001004112.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio small nuclear ribonucleoprotein polypeptide A (snrpa), mRNA. (1342 bp)
inference="alignment:Splign:2.1.0" CDS 43..888 /gene="snrpa" /gene_synonym="fc19d01; wu:fc19d01; zgc:77810" /codon_start=1 /product="U1 small nuclear ribonucleoprotein A" /protein_id="NP_955965.1" /db_xref="GeneID:324121" /db_xref="ZFIN:ZDB-GENE-030131-2841" /translation="MAGQEMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNALRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDRKKEKKKPKVPEAGAGKKGGSGATPAMAGVPAAIPGMPPMSQAPRMMPMPGQPPYMPPPGMMPPPNMAPGQMPPGAMPPGGMMPGQMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQGFKITQSNAMKISFAKK" misc_feature 61..327 /gene="snrpa" /gene_...
AA_position 23
Synonym: fc19d01; wu:fc19d01; zgc:77810
NM_199671.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio purine nucleoside phosphorylase 5b (pnp5b), mRNA. (1154 bp)
stop codon" CDS 51..935 /gene="pnp5b" /gene_synonym="zgc:101740" /EC_number="2.4.2.1" /codon_start=1 /product="purine nucleoside phosphorylase 5b" /protein_id="NP_001004628.1" /db_xref="GeneID:447889" /db_xref="ZFIN:ZDB-GENE-040912-54" /translation="MTPDSATGYSYEECTATADWLLKRAPERPLVGIVCGSGLGGLAKMLKDELVINYCDIPNFPQSTVHGHAGKLVFGTLKGKPCVCMQGRFHLYEGYAIQKTTMPIRVFKLMGVETVILTNAAGGLNQDFKVGDIMIIKDHINIPGFAGHNPLVGANDDRFGVRFPCMSDAYDRDLQQLVRAVADELDFSVFMRDGVYSVLGGPSFETIAECRALRQLGADAVGMSTVHEVIVARHCDMRVLALSLITNKAVMDYQSEKKANHEEVLETGALRAKQMEKLVSTVVSRIPNTPTHCS" misc_feature 84..899 /gene="pnp5b" /gene_synonym="zgc...
AA_position 47
Synonym: zgc:101740
NM_001004628.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio monoglyceride lipase (mgll), mRNA. (1638 bp)
protein_id="NP_956591.1" /db_xref="GeneID:378960" /db_xref="ZFIN:ZDB-GENE-031006-9" /translation="MPEPEGTRRSPQGVPYSDLPHIVNADGLHLFCRYWEPDGPPKALVYVAHGAGEHCGGYADIAHSLTQHGILVFAHDHVGHGQSEGERMELKNFQIYVRDSLQHIDIMKARYPKLAVFIVGHSMGGAISILTACERPQDFTGVVLIGPMVQMSAESATPFKVFMAKVLNRLAPKLTLGPIDPKFVSRDPKQVEAYEKDELNYHGGLRVSFGMQMLDATSRIERELPDIRWPFYILHGDADKLCDIRGSRLLYNEAKSTDKKLKVYEEAYHALHHDLPETIESVLKEVSTWILERVPAPQTS" misc_feature 254..964 /gene="mgll" /gene_synonym="cb909; wu:fc66g01; zgc:56561" /note="Serine aminopeptidase, S33; Region: Hydrolase_4; pfam12146" /db_xref="CDD:463473" exon 265..371 /gene="mgll" /...
AA_position 196
Synonym: cb909; wu:fc66g01; zgc:56561
NM_200297.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio cytochrome b5 reductase 1 (cyb5r1), mRNA. (1711 bp)
db_xref="GeneID:336553" /db_xref="ZFIN:ZDB-GENE-030131-8497" /translation="MSYAMSTTVAVTVGVVLVSTAGLLGYYYFNRKRKILITLIDPSEKYKLRLVDKEIISHDTRRFRFALPSPEHVLGLPVGKHVYLSARIDGNLIVRPYTPVSSDDDKGFVDLVVKIYFRDVHPKFPEGGKMSQYLESLRIGDVIDFRGPGGLLEYKGAGRLDIQADKKAPAETKTVKSLGLIAGGTGITPMLQLIRDITKNPNDTTTCSLLFANQTEKDILLKDELEEIQARHSDRFKLWFTVDRAPADWEYSQGFISAEMIQDHLPPPSDDSMILMCGPPPMIQFACNPNLDKLGYRQSQRFAY" misc_feature <174..971 /gene="cyb5r1" /gene_synonym="dia1; wu:fb13e02; wu:fb15h03; zgc:56042" /note="nitrate reductase [NADPH]; Region: PLN02252" /db_xref="CDD:215141" exon 75..221 /gene="cyb5r1" /gene_synonym="dia1; wu...
AA_position 222
Synonym: dia1; wu:fb13e02; wu:fb15h03; zgc:56042
NM_200189.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio retinaldehyde binding protein 1b (rlbp1b), mRNA. (1382 bp)
CRALBPb; rlbp1; zgc:77766" /note="cralbpa; rlbp1a; retinaldehyde binding protein 1" /codon_start=1 /product="retinaldehyde-binding protein 1b" /protein_id="NP_991253.1" /db_xref="GeneID:402990" /db_xref="ZFIN:ZDB-GENE-040426-1870" /translation="MAVVSGTFRMVSEEEQALRAKLEHLTVKDHGPVFEASTKVPDHTMQKAKDELNETDEKRTSAVKELRGIIKEKAETGDELAKGVQDTFGEKPDGVLVRFIRARKYDVNRAYELMKGYVRFRRDYPELFENLTPEAVRSTIEAGYPGILSSRDKYGRVVLLFNIENWDYEEITFDEILRAYCVILEKLLENEETQINGFCIIENFKGFTMQQASGIKPTELKKMVDMLQDSFPARFKAVHFIHQPWYFTTTYNVVKPLMKSKLLERVFVHGDDLENYFKEFDAEILPSDFDGKGSKYDGKITAAHLFD" misc_feature 208..381 /gene="rlbp1b" /gene_...
AA_position 49
Synonym: CRALBPb; rlbp1; zgc:77766
NM_205690.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 183 (rnf183), mRNA. (1858 bp)
EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase RNF183" /protein_id="NP_001070136.1" /db_xref="GeneID:767730" /db_xref="ZFIN:ZDB-GENE-060929-1090" /translation="MGDGREKPQSSRKGSNAKPKLDSKGSLNLGSSEQRQRADKPVRRSRSNDTENRRREASRGRERDRRDEGRPQRGRSEEGRRRGHNHEPGNRAWDKEPPKDELQDTECIVCFCNFDNVFKTPKLLSCGHTFCLECLARINVNSPEIKTLTCPICREVTEIRHGRDLPHLLNNEAIFRQLPSEMQRALSVRFKRSKGKLVLKNPPTNNSIKTTLNLPVSKKKEEQAGNNAIGAIEEGLGQATMINVGRPPNRMRGRMRRVMYSSQCYYAVVAVIISITVALMMVGIFTFVVMPNLQRPITKPLQNQTGSSAVQADSSP" misc_feature 490..654 /gene="rnf183" /gene_synonym="zgc:153310" /note="RING finger...
AA_position 99
Synonym: zgc:153310
NM_001076668.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio CD2 (cytoplasmic tail) binding protein 2 (cd2bp2), mRNA. (1387 bp)
MSKRKVTFQDGDSEITLEEEIPKKKMVDGLTGPGSRFKEKHSLDSDEEDEVEDVDNSSKYDILASDDVEGQEGATIDYDEGVRITPFNLDEEMQEGHFDSEGNYFVNKEKDIRDNWLDNIDWVKVKEQPVKKKKGLAAKRKRRVGDEDEAEEEIKREEQRNDSEDEEEEKEKEPAEDPLAAYSHYQLTEAIIELLLPGETVSAALRRLGGLGGQKKKGRQRNGEEEKKEASNRDADKLDKLTALADRLVGIGEFEIYQQTYEKLAYQLKGMTRGKAAKTLGDEEEDKDELDMFGDDFDEKHDADKNEDNDNRKVSDEVMWEYKWENKESSELYGPFSSQQVQDWVDEGYFNDGVYCRRIGQEGASFYNSKRIDFDLYT" misc_feature 1007..1189 /gene="cd2bp2" /gene_synonym="zgc:56165" /note="GYF domain: contains conserved Gly-Tyr-Phe residues; Proline-binding domain in CD2-binding and other proteins. Involved in signaling lymphocyte...
AA_position 287
Synonym: zgc:56165
NM_200961.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio low density lipoprotein receptor-related protein associated protein 1 (lrpap1), mRNA. (2075 bp)
gene_synonym="wu:fi20f07; wu:fi22c06" /codon_start=1 /product="alpha-2-macroglobulin receptor-associated protein precursor" /protein_id="NP_958463.2" /db_xref="GeneID:333939" /db_xref="ZFIN:ZDB-GENE-030131-5871" /translation="MQLLILVSLFAVGAMAGKYSKEMNEKNASDKSNSQVEFRIAKLNQVWEKAIRMQLAPVRLSELHSDLKIQEKDELQWKKLKAEGMDEDGEREAKLRRNFNIILAKYGMDGKKDTRTLDSNRLKDHEVKVGDTFDDPKLDKLWNKARTSGKFSDEELQTLHREFQHHKDKIHEYNIVMDTVSRTEEIHKNVISPLEGDVKENVLHQKHTDLKQRMRDLNQGFERLRKITHEGYTDDSEFREPRVIELWEMAKRSNLSKDELDSLKEELRHFETKVEKHQHYQEQLELSHQKLKHVEALGDEDHIMRNKEKYNTLAEKAREMGYKMKKHLQDLTNKLSKNGLQHNEL" misc_feature 116..460 /gene...
AA_position 72
Synonym: wu:fi20f07; wu:fi22c06
NM_201306.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio SERPINE1 mRNA binding protein 1a (serbp1a), mRNA. (2317 bp)
db_xref="GeneID:335449" /db_xref="ZFIN:ZDB-GENE-030131-7389" /translation="MPGHLQEGFGCVVTNRFDQLFDDEEDPFEVLKQAEKKKKDATVPGAAKTAAQAAKQPKKESQKERRNPLPDKKEETQAPVPLKKDGMRKMGRRPEQQGQQGSVPQQQAGQGEGRPPADRRPDRRPPRERRFDKPADEKPAEGGEFSVEKTMGDRPFRGRGGPRGGRGGRGRGVGRTDGFDSRGKREFDRHSGSDRSLKAEEKRGGSGSHNWGTVKDELSELDQSNVTEDTPEGEEHPPADSENKENEVEEAKEEGPKEMSLDEWKAQQDKERAKVEFNIRKANEGADWKKGYVLHKSKAEDASADDAAGDHHFRKPANDITSQLEINFGDLGRPGRGRGGPRGGRGGRGAAAATRPPRERRPDKVGGVSVPNVDDPEAFPALA" misc_feature 86..>358 /gene="serbp1a" /gene_synonym="hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc...
AA_position 223
Synonym: hm:zeh0245; PAI-RBP1; serbp1; wu:fa12d05; wu:fb36e07; wu:fc16f12; wu:fj13e12; zgc:55489
NM_214714.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio calreticulin (calr), mRNA. (3145 bp)
SDLNQEDMHGDSTYNIMFGPDICGPGTKKVHVIFNYKGKNHLINKDIRCKDDEYSHLYTLIVNPDNTYEVKIDNKKVESGSLEEDWDFLPSKKIKDPEAKKPEDWDEREKIDDPEDQKPEEWDKPENIPDPDAKKPDDWDEEMDGEWEPPMVTNPDYKGEWKPRQIDNPAYKGKWVHPEIDNPEYTADSEIYKYDSIGVIGLDLWQVKSGTIFDNFLITNDPKLAEEVGTETWGATKDAEKKMKESQEEEDRKKHDEEEKSRKEEAKEEEEEEKEEEDEEEEEEEEEEDEEEETDSKLKDEL" sig_peptide 170..223 /gene="calr" /gene_synonym="calrl2; fc66d10; wu:fc66d10; wu:fj50c03; zgc:66153" /inference="COORDINATES: ab initio prediction:SignalP:6.0" misc_feature 239..1168 /gene="calr" /gene_synonym="calrl2; fc66d10; wu:fc66d10; wu:fj50c03; zgc:66153" /note="Calreticulin family;...
AA_position 414
Synonym: calrl2; fc66d10; wu:fc66d10; wu:fj50c03; zgc:66153
NM_199713.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio prolactin regulatory element binding (preb), mRNA. (1809 bp)
id="NP_001002638.1" /db_xref="GeneID:436911" /db_xref="ZFIN:ZDB-GENE-040718-385" /translation="MGKRRAPELYRAPFPLYTVKMDPRTGLIITAGGGGASKTGIKNAVHFLSLDLVGGAHSATLLHTHETDTRATMNMCLGGDVMAAGQDDTCRLMKFSLHEAKHNKKPAAKDGTGDKGGARKRAGKGQNADGGEGDAAQMKQDSTQISVQDLGSVQADFSPQDPCVKCVRFSLDLTLLLSGGADGFVRVWEFPSLKEKLNFRAHKDELEDIDISPDKKHIVTVGRDFECSVWSGDQLAVGLCWHENMPQITEKTYRYKACRFAKVEDQKDALRLYTVQIPHKRDRKPPPCYITKWDGRAFLPLLTKPCGNEVISCLTASDSGTFLGLGTVTGSVAIYIAFSLQKLYYIQESHGIVVTDLTFLPDAPKTKAVKGDNEVVMLSVAVDSRCQVHAVSNRRSFPLWLVLFFCGLMVVAVILLLQSFFPGFI" misc_feature 868 /gene="preb" /gene_synonym="sb:cb385; wu:fj59h11; zgc...
AA_position 203
Synonym: sb:cb385; wu:fj59h11; zgc:92203
NM_001002638.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:153896 (zgc:153896), mRNA. (1480 bp)
ALFLSVNGKPLSERRTYNKLLLISFDGFRWDYDQDVDTPNLDKLVKEGVKAKYINPPALTMTSPSHFTTITGRWIEDHGVVHNLMFNDTTGLRVPHKATLKKSEWWDNGVLPLWITAQKQGLKTASFYYPGGGVNYSGQAVNRFLVENHGSPDDNETEWQQNIDTVMGWFAKEDFDFVTLYYGEPDNVGHAVGPETHERRKIIEQIDRTIGYLRESIHKNALTDHLNVILTSDHGMTTIKNATEVKEIVLANYISLLKLTRFDLLDYGGFGMITPREGKEQEVYNALKNAHPNLTVYRKDELPENFHMKKHARIQPIVLLADLGFNINSRLILDINKGDHGFSSEEMDMKMFFRAFGPDFSPNFLAEPFDSVSIYPLMCKLLGVVPEANNGSLSDTKGMLVDNFDAGGSSGRIQVSFTLLVVSTVILTLI" sig_peptide 2..52 /gene="zgc:153896" /gene_synonym="si:ch211-225l4.2" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 80..1177 /gene="zgc...
AA_position 308
Synonym: si:ch211-225l4.2
NM_001045194.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio protein disulfide isomerase family A, member 6 (pdia6), mRNA. (1979 bp)
LGGKTGGSDYSRQSGGGAGNKKDVVELTDDNFDRTVLESDDVWLVEFFAPWCGHCKNLEPEWTAAATEVKEQTKGKVRLAAEDATVHQGLASRFGIRGFPTIKVFRKGEEPEDYQGGRTRSDIVARALELYSDNIPAPELQEVLNEGILKKTCEDYQLCIIAVLPHILDTGASGRNSYLEVMKTMAEKHKKKMWGWLWTEAGAQMELEASLGIGGFGYPAMAAINSRKMKFALLKGSFSETGIHEFLRELSVGRGSTATVGGGALPKINTVQAWDGKDGELPMEDDIDLSDVDLDDLEKDEL" sig_peptide 27..83 /gene="pdia6" /gene_synonym="pdi-p5; pdip5; wu:fb51h08; wu:fc09e09" /inference="COORDINATES: ab initio prediction:SignalP:4.0" misc_feature 102..410 /gene="pdia6" /gene_synonym="pdi-p5; pdip5; wu:fb51h08; wu:fc09e09" /note="PDIa family, P5 subfamily; composed of eukaryotic...
AA_position 437
Synonym: pdi-p5; pdip5; wu:fb51h08; wu:fc09e09
NM_197933.2 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio nicotinamide riboside kinase 2 (nmrk2), transcript variant 2, mRNA. (1275 bp)
codon_start=1 /product="nicotinamide riboside kinase 2 isoform 2" /protein_id="NP_001004618.3" /db_xref="GeneID:447879" /db_xref="ZFIN:ZDB-GENE-040912-44" /translation="MDAMVNTVKGWMENPVKFARSHGVSVSTTSDPDSDIHILIVEGFLLYNYKPLIDVYNKCFYVTIPYEECKRRRSTRTYTVPDPPGLFDGHVWPMYLKHRTEMENSSLDIQYLDGMSSKDELYNQVYEDIQNSLLNIL" exon 413..484 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /inference="alignment:Splign:2.1.0" exon 485..591 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /inference="alignment:Splign:2.1.0" exon 592..677 /gene="nmrk2" /gene_synonym="itgb1bp3; zgc:103408" /inference="alignment:...
AA_position 118
Synonym: itgb1bp3; zgc:103408
NM_001004618.3 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio epidermal growth factor receptor pathway substrate 8b (eps8b), transcript variant X3, mRNA. (2010 bp)
codon_start=1 /product="epidermal growth factor receptor kinase substrate 8-like protein 2 isoform X3" /protein_id="XP_073786038.1" /db_xref="GeneID:564779" /db_xref="ZFIN:ZDB-GENE-060503-164" /translation="MNKSSRDKDNRDQQKEVNDELLKRITDNKAQPPARNFRVERSSRSIRITDESQPFEVHAWLNAKGFSRPVVECLGILNGAQLFSLSKDELKAVCGDEGSRVYSQITVQKAQIERGNGDTELQEIMRRRQQEVDSTWD" ORIGIN //...
AA_position 87
XM_073929937.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio guanylate cyclase activator 1Ab.1 (guca1ab.1), transcript variant X4, mRNA. (4598 bp)
gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /codon_start=1 /product="guanylate cyclase activator 1Ab.1 isoform X2" /protein_id="XP_073792440.1" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" /translation="MAPEPPDRDHAHSRQDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA" polyA_site 4598 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 57
Synonym: gcap5; guca1e; zgc:66243
XM_073936339.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 24 (rnf24), mRNA. (1603 bp)
CDS 332..781 /gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24" /protein_id="NP_001007353.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 557..718 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" exon 475..517 /gene="rnf24" /...
AA_position 88
Synonym: zgc:103462
NM_001007352.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X5, mRNA. (4893 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799688.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" polyA_site 4893 /gene="rnf24" /gene_synonym="zgc:103462" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 88
Synonym: zgc:103462
XM_073943587.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X4, mRNA. (4891 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799683.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" polyA_site 4891 /gene="rnf24" /gene_synonym="zgc:103462" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 88
Synonym: zgc:103462
XM_073943582.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X3, mRNA. (5031 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799680.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" polyA_site 5031 /gene="rnf24" /gene_synonym="zgc:103462" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 88
Synonym: zgc:103462
XM_073943579.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X2, mRNA. (4935 bp)
gene="rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X2" /protein_id="XP_073799679.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" polyA_site 4935 /gene="rnf24" /gene_synonym="zgc:103462" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 88
Synonym: zgc:103462
XM_073943578.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio tripartite motif containing 62, tandem duplicate 1 (trim62.1), mRNA. (1758 bp)
note="upstream in-frame stop codon" CDS 277..1704 /gene="trim62.1" /gene_synonym="trim62; zgc:158653" /EC_number="2.3.2.27" /codon_start=1 /product="E3 ubiquitin-protein ligase TRIM62" /protein_id="NP_001074143.1" /db_xref="GeneID:791192" /db_xref="ZFIN:ZDB-GENE-070112-502" /translation="MASYLKDELLCSICLSIYQDPVSFGCEHYFCRKCITEHWSRQEHHGTRDCPECRRTFTDPLLSPSLKLSNIVERYTAFPLDAILNAQRNSYPCKDHEKVKLFCLSDKSLVCFFCDEPALHEQHQVTTVDVAYEEIQREMKEQLATLQDSEKGHTEALQLLQRQLTETKSSAKSLRATIGEAFERLQRFLRERQKSMLEELEADTARTLTDIEHKIQRYSQQLRDVKEGIQILQERLSETSRHEFLEGIALTSDRIKGKIHETNLTYEDFPTSKYMGPLQYTIWKSLFLDISPVPAALTMDPSTAHQRLILS...
AA_position 6
Synonym: trim62; zgc:158653
NM_001080674.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio tripartite motif containing 35-28 (trim35-28), mRNA. (1662 bp)
product="tripartite motif containing 35-28" /protein_id="NP_001103174.1" /db_xref="GeneID:559351" /db_xref="ZFIN:ZDB-GENE-071004-19" /translation="MADSSDDDITDRPPLLETDLTCPVCKDIFKEPELLSCSHSFCKVCLEGSWKNQTKRQCPMCRKCCDGETPIPNRALHNACVSYKKERNRRGATTGSEEELCGLHQRPFQLFCIKDEEPVCVECVTLHPGHELVPTEQGVPFCKDELTMKIKILESKLDSFKRMKKRYKETITFIEGQTKEAENQIKQEFERLHQVLNEEEKTRLLALSREEDEKKQVVTEKIEAIGRDITGLAELIQSVKREMGAEDLTFLLNFQKLKRRTQWTGDDPRRVYGALINMALHVGALGYKIWESMQAHVTCLPVILDPNTASPWLSISPDFSSMQESRERQSFPDNPERFDPCVFVLGSEGFSSGRHRWEVRVADHPKWILGVCKESVVRKRKFTVTTTAGVWTIGLSKGVYNALTSPRTVLNLERRPETVRVKVNMEKGEVSFWDTGNNKHLCTFNDKFTGKLF...
AA_position 143
Synonym: zgc:171672
NM_001109704.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio zgc:158423 (zgc:158423), mRNA. (1723 bp)
gene="zgc:158423" /note="upstream in-frame stop codon" CDS 59..1501 /gene="zgc:158423" /codon_start=1 /product="uncharacterized protein LOC790938" /protein_id="NP_001073552.1" /db_xref="GeneID:790938" /db_xref="ZFIN:ZDB-GENE-061215-58" /translation="MKDIELKEVDQTKQLMTRENGCVKVTVPENTAVKYTGLSKDELVKVAGTPGWIRIRWALLALFFLGWVGMLAGAIVIIVQAPRCKPIPEMHWWNEGPLYQISDVNAFTESGLKGLEGKLDYLSQMNVAGVVLGPIHSLKIDQLDTLNLISVQSEVGTENELESLLGLAHKKGIFIVLNLTPNFNKTSAWFNNFNAVAEKIKDACTYWLDKGLDGIFLSDLNEIPTDAWPSIKEIFNRSDATKEVALMGSVNSMSVNDISVLLNRSGVDLLLTGQPDLSDSGEKQAQIIKEFNSSIQQTSLGWRSRQDPGTLAAEFPIRLYQILLFTLPGTPVFSAGEELGLKAEEQLQAL...
AA_position 40
NM_001080083.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 122 (rnf122), transcript variant X1, mRNA. (3677 bp)
si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122 isoform X1" /protein_id="XP_005172552.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 609..746 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 102
Synonym: si:ch1073-392o20.1
XM_005172495.6 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio ring finger protein 122 (rnf122), mRNA. (1585 bp)
gene_synonym="si:ch1073-392o20.1" /codon_start=1 /product="RING finger protein 122" /protein_id="NP_001314745.1" /db_xref="GeneID:100329730" /db_xref="ZFIN:ZDB-GENE-091204-454" /translation="MHPFQWCNGCFCGLGLIYSNKTCTMPSVTFQDLPLNIYMVIFGTGIFVFVLSLIFCCYFISKLRHQAQSERFGYREVVLKGDPKKLNLHGQTCAVCLEDFKVKDELGVLPCQHAFHRRCVVKWLEVRCVCPMCNKPLSGSSEQHQSLGTLLDELV" misc_feature 608..748 /gene="rnf122" /gene_synonym="si:ch1073-392o20.1" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order...
AA_position 103
Synonym: si:ch1073-392o20.1
NM_001327816.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio trafficking protein particle complex subunit 6B (trappc6b), mRNA. (954 bp)
complex subunit 6B; trafficking protein particle complex 6b" /codon_start=1 /product="trafficking protein particle complex subunit 6b" /protein_id="NP_001006029.1" /db_xref="GeneID:450008" /db_xref="ZFIN:ZDB-GENE-041010-122" /translation="MADEALFQFLHSEIIQYVNSAETGESENGRCVSKLENMGFRVGQGLIERFTQDTPRFKDELDVMKFICKDFWTSVFKKQIDNLRTNHQGIYVLQDNKFRLLTQLSAGKQYLEHAPKFLAFTCGLVRGALSNIGVKSIVTAEVSVMPACKFQVMIQKM" misc_feature 211..669 /gene="trappc6b" /gene_synonym="zgc:103464" /note="Trs33 subunit of the TRAPP complex; Region: TRAPPC6A_Trs33; cd14944" /db_xref="CDD:271347" misc_feature order...
AA_position 58
Synonym: zgc:103464
NM_001006029.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ring finger protein 24 (rnf24), transcript variant X1, mRNA. (4920 bp)
rnf24" /gene_synonym="zgc:103462" /codon_start=1 /product="RING finger protein 24 isoform X1" /protein_id="XP_005160122.1" /db_xref="GeneID:492480" /db_xref="ZFIN:ZDB-GENE-041114-40" /translation="MIYLPVLSMTSDLQHYSFRMPNIGFQNLPLNIYIVVFGTAIFVFILSLLFCCYLIRLRHQAHKELYAYKQVIQKEKVKELNLHEICAVCLEEFKQKDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQQQSMSEPIAPTQQHLPGVENLV" misc_feature 623..784 /gene="rnf24" /gene_synonym="zgc:103462" /note="RING finger, H2 subclass, found in RING finger protein 24 (RNF24) and similar proteins; Region: RING-H2_RNF24; cd16675" /db_xref="CDD:438337" polyA_site 4920 /gene="rnf24" /...
AA_position 96
Synonym: zgc:103462
XM_005160065.6 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio fascin actin-bundling protein 1a (fscn1a), mRNA. (2495 bp)
db_xref="ZFIN:ZDB-GENE-031009-1" /translation="MTANGTSDMLKIQFGLINCGNKYLTAETFGFKINASATSMKKKQIWTLEQDGDDSNMFFLKSHLGRYIAADKDGNVTGDSETPGEDCRFIITAHDDGRWSLQSEPHKRYLGGTEDRITCFAQTISIAEKWSVHIAMHPQVNIFSVTRKRYAHLSSEQNEIAIDRDVPWGVDSLITLVFQDQRYHLQTSDNRFLKNDGSLSQTADKTTGYTLEFRSGKVAFRDCTGKYLAPSGPSGTMKSGKSMKVGKDELFVLEQSLPQVVLTAGNDRNVSTRQGMDLSANQDEEGDQETFQMEISKDTKKCAFRTCTGKYWTLTANGGLQCTASTKSANCYFDIEWRGKKITLRATNGKYVAAKKNGQLAATIDSAGETEEFLMKLINRPLIVLRGEHGFIGCRRVTGTLDSNRSSYDVFGLDFNDGAYSLRDCTGKYWMVGSESNVLSSSDTPVDFFLEFCNYNKVAIKTTEGKYLKGDHAGVLKANADDLDSSTMWEY" misc_feature 172..549 /gene="fscn1a" /gene_synonym="fscn1;...
AA_position 247
Synonym: fscn1; sb:cb589; zgc:153632
NM_001076560.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio splicing factor 3a, subunit 3 (sf3a3), mRNA. (2216 bp)
wu:fj94f01; zgc:110227" /note="spliceosome associated protein 61" /codon_start=1 /product="splicing factor 3A subunit 3" /protein_id="NP_001004289.1" /db_xref="GeneID:446168" /db_xref="ZFIN:ZDB-GENE-040908-1" /translation="METILEQQRRYHEEKERLMDAKTKEMLTKKTTLRDQINSDHRVRAMLDRYMEVSANLRDLYEDKDGMRKDELNAISGPNEFAEFYNRLKLIKEFHRKHPNEICVPMSVEFEELMKAKDNPSEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKGVEKLEYVTYLSTFDQLFDISKDRKNAEYKKYLEMLLEYLQEYTDRVKPLLDQNELYGKILAEFEKKWETGMFPGWPKETSSALTHAGAHLDLSAFSSWEELASLGLDRLKSALMALGLKCGGTLEERAQRLFSTKGKSLESLDPSLFAKNPKAKGPKKDSERNKESAFLEAQIYEYVEILGEQRQLSHENVQRKQARTGEERDEEDEEQPSESESEDEDNEII...
AA_position 69
Synonym: SAP61; SF3a60; wu:fi15a06; wu:fj94f01; zgc:110227
NM_001004289.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio PTK6 protein tyrosine kinase 6b (ptk6b), mRNA. (2336 bp)
FKFSSIVEVIEHYQSHPLSIGDLLSEPCIRIKPENVPPPSTDEWELPKEEFQLENQLGSGHFADVYSGKWKNHSKVAIKILKNNDALVLREFQLEVQIMKRLRHKHLISLFAVCTSSSPFYIITELIEKGDLLHFLRNPEGRSLQMESLIDMAAQVADGMAYLEANNSIHRDLAARNVLVGDGYVCKIADFGLARIIKEPVYLSDDKKIPYKWTAPEAIGHGTYSSKSDVWSFGILLYEIVTHGGIPYPGVNTGEVYDLITKENYRMPSPPKCPQAIYNIMRACWRIESVDRPNFKVLKDELDNYQGQYSSVGN" misc_feature 254..424 /gene="ptk6b" /gene_synonym="zgc:153964" /note="Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6; Region: SH3_Brk; cd11847" /db_xref="CDD:212781" misc_feature order...
AA_position 496
Synonym: zgc:153964
NM_001076672.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio thyroid hormone receptor beta (thrb), transcript variant X46, mRNA. (1253 bp)
CDS 321..848 /gene="thrb" /gene_synonym="fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03" /codon_start=1 /product="thyroid hormone receptor beta isoform X16" /protein_id="XP_073786653.1" /db_xref="GeneID:30607" /db_xref="ZFIN:ZDB-GENE-990415-268" /translation="MSEQADKCNSRWKDEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLNGEY" ORIGIN //...
AA_position 28
Synonym: fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03
XM_073930552.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio thyroid hormone receptor beta (thrb), transcript variant X45, mRNA. (1311 bp)
CDS 379..906 /gene="thrb" /gene_synonym="fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03" /codon_start=1 /product="thyroid hormone receptor beta isoform X16" /protein_id="XP_073786652.1" /db_xref="GeneID:30607" /db_xref="ZFIN:ZDB-GENE-990415-268" /translation="MSEQADKCNSRWKDEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLNGEY" ORIGIN //...
AA_position 28
Synonym: fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03
XM_073930551.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio thyroid hormone receptor beta (thrb), transcript variant X44, mRNA. (1339 bp)
CDS 384..911 /gene="thrb" /gene_synonym="fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03" /codon_start=1 /product="thyroid hormone receptor beta isoform X16" /protein_id="XP_073786651.1" /db_xref="GeneID:30607" /db_xref="ZFIN:ZDB-GENE-990415-268" /translation="MSEQADKCNSRWKDEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLNGEY" ORIGIN //...
AA_position 28
Synonym: fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03
XM_073930550.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio oxidative stress responsive kinase 1a (oxsr1a), mRNA. (1737 bp)
note="oxidative stress responsive 1a" /codon_start=1 /product="serine/threonine-protein kinase OSR1a" /protein_id="NP_001092217.1" /db_xref="GeneID:568602" /db_xref="ZFIN:ZDB-GENE-070620-25" /translation="MSEDPSSQPWSIDKDDYELQEVIGSGATAVVQAAYCKPRKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDFIKYIISKGEHKSGVMDEPSIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDMTRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADLWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPCLETGVTDKEMVKKYGKSFRKMISLCLQKDPEKRPTAAELLKHKFFTKAKNTDYLKEKLLERAPTIGERSRKVRRVPGSSGRLHKTEDGEWEWSDDELDVESEEGKAAVAALRSPRVKEEAVPNAEVFPAESSGFLQPAAVGQPEVPHAA...
AA_position 85
Synonym: wu:fb77f12; zgc:165661
NM_001098747.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio protein O-glucosyltransferase 3 (poglut3), mRNA. (2565 bp)
map="21" gene 1..2565 /gene="poglut3" /gene_synonym="im:7159505; kdelc2; zgc:165521" /note="protein O-glucosyltransferase 3" /db_xref="GeneID:566063" /db_xref="ZFIN:ZDB-GENE-060810-142" exon 1..449 /gene="poglut3" /gene_synonym="im:7159505; kdelc2; zgc:165521" /inference="alignment:Splign:2.1.0" misc_feature 170..172 /gene="poglut3" /gene_synonym="im:7159505; kdelc2; zgc:165521" /note="upstream in-frame stop codon" CDS 221..1777 /gene="poglut3" /gene_synonym="im:7159505; kdelc2; zgc:165521" /EC_number="2.4.2.26" /note="KDEL (Lys-Asp-Glu-Leu) containing 2" /codon_start=1 /product="protein O-...
AA_position 515
Synonym: im:7159505; kdelc2; zgc:165521
NM_001098745.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio proteasome 26S subunit, non-ATPase 8 (psmd8), transcript variant X2, mRNA. (1516 bp)
psmd8" /gene_synonym="fa93g07; fb17c09; fb49a10; wu:fa93g07; wu:fb17c09; wu:fb49a10; zgc:86762" /codon_start=1 /product="26S proteasome non-ATPase regulatory subunit 8 isoform X1" /protein_id="XP_073785118.1" /db_xref="GeneID:415221" /db_xref="ZFIN:ZDB-GENE-040625-136" /translation="MAQLKCYYFDYKDELPESAYRHQLLGLNLLFLLSQNRVSEFHTELERLSAKDIQTNVYIRHPVSLEQYLMEGSYNKVFLAKGNIPAESYTFFIDTLLDTIRDEIAGCIEKAYEQIQFNEATRVLFFSSPKKMTDYAKKRNWTQSPDGYYSFSTQHQKTEEVTIPSTELAKQVIEYARQLEMIV" polyA_site 1516 /gene="psmd8" /gene_synonym="fa93g07; fb17c09; fb49a10; wu:fa93g07; wu:fb17c09; wu:fb49a10; zgc:86762" /experiment...
AA_position 12
Synonym: fa93g07; fb17c09; fb49a10; wu:fa93g07; wu:fb17c09; wu:fb49a10; zgc:86762
XM_073929017.1 - Danio rerio (zebrafish) - NCBI - UCSC
Danio rerio guanylate cyclase activator 1d (guca1d), mRNA. (558 bp)
gcap4; si:rp71-1p14.1" /codon_start=1 /product="guanylate cyclase activator 1d" /protein_id="NP_001011661.1" /db_xref="GeneID:494573" /db_xref="ZFIN:ZDB-GENE-040724-231" /translation="MGNNHASLDDILAEDMHHWYNKFMRESPSGLITLFELKSILGLQGMNEDANSYVDQVFCTFDMDRDGYIDFVEYIAAISLMLKGEINQKLKWYFKLFDQDGNGKIDKDELETIFTAIQDITRNRDIVPEEIVALIFEKIDVNGEGELTLEEFIEGAKEHPEIMDMLKILMDLTPVLLIIVEGRQK" misc_feature 82..228 /gene="guca1d" /gene_synonym="gcap4; si:rp71-1p14.1" /note="EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have...
AA_position 107
Synonym: gcap4; si:rp71-1p14.1
NM_001011661.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio gonadal somatic cell derived factor (gsdf), transcript variant X1, mRNA. (1146 bp)
cap analysis [ECO:0007248]" /note="transcription start site" CDS 281..844 /gene="gsdf" /codon_start=1 /product="gonadal somatic cell derived factor isoform X1" /protein_id="XP_003200841.1" /db_xref="GeneID:571289" /db_xref="ZFIN:ZDB-GENE-101029-3" /translation="MVCVCLPCVRWAPLLALLVCVFAQDSSRECLDKDELIAEMPSTVDLPTECVLTCTALTYRQILDTQRRVTVRFRDSRPGEDRDEFCWLISSRCSTWDEVLVLLSLSQSDAATEARIRLQTDSLILVEPQDSPSVLPDDCGLRFDVTAQLQGLRQHTLCVRPHGIMGNQLQCPPALVFVKQKQKESRS" polyA_site 1146 /gene="gsdf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...
AA_position 33
XM_003200793.7 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio thyroid hormone receptor beta (thrb), transcript variant X43, mRNA. (1071 bp)
CDS 379..945 /gene="thrb" /gene_synonym="fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03" /codon_start=1 /product="thyroid hormone receptor beta isoform X15" /protein_id="XP_073786650.1" /db_xref="GeneID:30607" /db_xref="ZFIN:ZDB-GENE-990415-268" /translation="MSEQADKCNSRWKDEAMQNGYIPSYLDKDELCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLNPTYACKYEGKCVIDKVTRNQCQECRFKKCIAVGMATDLVLDDSKRLAKRKLIEENRERRRREELQKTVWDRPEPTQEEWEMIRVVTEAHMATNAQGNHWKQKRKFLVRGLFPVDNITVIFHVF" ORIGIN //...
AA_position 28
Synonym: fj24f03; NR1A2; thr2; TR-beta; trb; TR[b]1; wu:fj24f03
XM_073930549.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio large ribosomal subunit protein uL6-like (LOC798685), mRNA. (627 bp)
/product="LOW QUALITY PROTEIN: large ribosomal subunit protein uL6-like" /protein_id="XP_073770893.1" /db_xref="GeneID:798685" /translation="MKTILSKQTVDTPDNVMLSLKGRTVTIXGPSTVLYQXFNHINLELSLLGKKRKKLRVDKWWVKRKELATVRSICSHVQNMIKGVNLGFXKILSVYDHFPINVVIQESGSLMEIRNFLGEKCIHHVRMRQGVVCAVSATQKDELVLEDNYMXLVSNSTALIXQATTVRKKDIXKFLDGIYVSEKGTVVEQQED" ORIGIN //...
AA_position 140
XM_073914792.1 - Danio rerio (zebrafish) - NCBI - UCSC
PREDICTED: Danio rerio ribosomal protein L9 (rpl9), transcript variant X2, mRNA. (779 bp)
large ribosomal subunit protein uL6 isoform X2" /protein_id="XP_005170964.1" /db_xref="GeneID:336702" /db_xref="ZFIN:ZDB-GENE-030131-8646" /translation="MKTILSNQTVDIPDNVTVSLKGRTVTVKGPRGVLRREFNHINLELSLLGKKQKKLRVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQESGSLVEIRNFLGEKYIRRVRMRQGVACAVSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEAES" misc_feature 30..602 /gene="rpl9" /gene_synonym="ab02c03; fa93a01; mg:ab02c03; wu:fa93a01; zgc:103730" /note="60S ribosomal protein L6; Provisional; Region: PTZ00027" /db_xref="CDD:240234" polyA_site 779 /gene="rpl9" /gene_synonym="ab02c03; fa93a01; mg:...
AA_position 141
Synonym: ab02c03; fa93a01; mg:ab02c03; wu:fa93a01; zgc:103730
XM_005170907.6 - Danio rerio (zebrafish) - NCBI - UCSC

Data Export:

下記より最大10000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://ggrna.dbcls.jp/ja/dr/aa%3aKDEL
lang : ja | div : | spe : dr | query_string : aa:KDEL | format : html | download : 

0.000 | 0.000 | search_start;
0.087 | 0.087 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=0&format=json
0.136 | 0.049 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Danio rerio (zebrafish)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.141 | 0.006 | cgi_end;

GGRNA ver.2 by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]