2025-01-30 23:48:52, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_068224448 2597 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio claudin-34-like (LOC137496740), mRNA. ACCESSION XM_068224448 VERSION XM_068224448.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007122.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2597 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="11" gene 1..2597 /gene="LOC137496740" /note="claudin-34-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns" /db_xref="GeneID:137496740" CDS 272..910 /gene="LOC137496740" /codon_start=1 /product="claudin-34-like" /protein_id="XP_068080549.1" /db_xref="GeneID:137496740" /translation="
MLYLLHTAHAQLLTLWISTVGWILIMVSLGTVEWRIWEVSDISIITSGIAWVGVWRVCFYSHAPILSTNQIMFCQKIHLWESFTPPEIASAQVLMILSIILGFFGNACIIVALRNLYFRFSSANPAFFAGGVLLILTASSALVPVCWNLSSVVNNYTVFFPESYLMPSAPLSQSVGPGIIVGFFASVLLVFSGLVFLSHRNPKVKPDIRESV"
ORIGIN
ttaattaattaagaagtttattattaatagtaattttgattcgatccaagaccgacgacgtgatgatcccatggtttccataatcctggaccaggccgtatcctgagcggctgcagtggtggtcatggaggagtggagagcatgagactgattcctgtgacgctccagggacagacgagtctctctgacgtccagtttctccagcgcctagactgcagctctgcacaagacgtttggccagcggagaaatagcaatgtgaatgcggacatcatgctgtatctgctccacacggcacacgctcagctcctgacgctctggatctccacagtgggatggatcctcatcatggtgagcctgggaacggtggagtggaggatctgggaagtgtccgacatctcaatcatcacttcaggtatagcctgggtgggcgtctggagggtgtgtttttatagccacgcccccatattatccaccaatcagatcatgttctgccagaagattcatttgtgggagtcgttcactccgcctgagattgcttcagcgcaggttttaatgatattgtcaattattttgggattttttggaaatgcgtgcatcatcgtcgccctcaggaatctatatttcagattttcatccgcaaatccggcgtttttcgcaggaggagttttgctcatcctgacggcatcttctgcgcttgttcccgtgtgctggaatctcagttcagtggtaaataattacactgttttcttcccggagtcttacctgatgccgtcagctccgctcagccagtctgtcgggcctgggattattgtgggcttctttgcgtctgttttgctggtgttcagcggcctggtgtttctgtcccacaggaacccaaaagtgaagccggacatccgggaatctgtttaaaacaacagggaattaataatccggctttccaaacacataatgagtgttagtgatagatgtgatttattataaatgactattattgtacaaacactgtgacgaatctaataattaaagggtcagttcacgcaaaaattgaacccaagtgtttttaaactgagtatgctgcttgttgaacacaaaaccagatattaggaagaatgttggaaccaaaaagccactgacaatattgaggagtgacagtgttttcatagccacgcccccatattatccaccaatcagatcatgttctgccagaggattggtctgtgtgcggcctgctgtttctgtcctacaggagtcaaagtgtgaagccgatcagacatccaggaatctgtttaaaacaacagggagttgataatccagctttccaaacacaacgagtgtgagtgctgtttacaggatagatgtgattattataatgactattgtatttaaagggtcagttcacgcaaaattgtaactcaagtgtttttaaactgctatgagtttgcttcatgtgttgagcacaaaacttgatactctgatatatgttggaaaaaaaactgccagtaatgtaatatgggggcgtggctgtgtgttttcatagccacgcccacataccatctaccaatcagatcatgttctgccaaaagattcatttgtgggagtcgttcactccaccagagattgctttagcgcaccttttaacgatatcgtcaattattttgggattttcgtccatagtcccggcatttttcgtcatcctgatggcaacttctgcgcttgttcccgtgtgcaggaatgtcagttcagttgtcaagagggaaattgattatccggctttccaaacacataacgagtgttagtgctgtttacaggatagatgtgattattataatgactattgtatttaaagggtcagttcacgcaaaattgtaactcaagtgttttttaactgctatgagtttgcttcatgtgttgagcacaaaacttgatactctgaaatatgttggaaaaaaactgccattgacatgaaatggggtgtggttatgtgttttcatagccacatcccacatcatccaccaatcagatcatgctctgccagaagattcatttgtgggagtcgttcactcctctggagattgcttcagcgcaggttttgatgatatttttgattattttgggatttatttttgccctcgggaatgtatattttgggtttaaagggtcagttcacaacaaaaatagcattgctgtaaaaaagaaaagaaaatagaggtaatttgattctgtgtataaagatgtgattaaaccaatgaaatgttttaggcaaaaaatattttaagagcttataaatttagactttgtacatttccctacagaataaatcaaactagcaaaacaaaaagggtttgtgtgcgataagagtcggttatctgactataaagcccaagtcatgagtgaactgtgtgtgtgcggctgcagaaaacgcttcattactgtaagaagcagataaaggctcggacaaggaattatgagacagactgtaatcctgatgattaactcaatgaagaactaaagggattatttcctttatctttctttgcttgatcctgcaggaacgtcgtgttcgtagattatgcttttttttttggtaagaagcttc
//
by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
[Full Text]