LOCUS       XM_068221375            2370 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio LIM homeobox 6b (lhx6b), mRNA.
ACCESSION   XM_068221375
VERSION     XM_068221375.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007116.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 4% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2370
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="5"
     gene            1..2370
                     /gene="lhx6b"
                     /note="LIM homeobox 6b; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 EST, 2 Proteins, and
                     97% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:557579"
                     /db_xref="ZFIN:ZDB-GENE-060531-41"
     CDS             1..753
                     /gene="lhx6b"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx6"
                     /protein_id="XP_068077476.1"
                     /db_xref="GeneID:557579"
                     /db_xref="ZFIN:ZDB-GENE-060531-41"
                     /translation="

MLAKVQNVPCWVNGLTWHLRCLQCSVCAVSLGHQNSCFIRNKEIFCRTDYNSTFGIKCARCGHQVSANDWIRRAGNDIYHLACFACFFCKRQLSTGEEFGLMENQVLCRVHYDITLLNLQQLSDNGNLIHLDGALPIQYLPKASKRPRTSFTSEQIQIMQTHFIRDKNPDAATLQRLADTTGLSRRVIQVWFQNCRARQKRIPLHDSIPERDRYQTSAMPFLSDLSSTSCSQVDLSLSMISASDPIHYYV"

ORIGIN      

atgttagccaaagttcagaatgttccctgctgggtgaatggattaacttggcatctgaggtgtttgcagtgctctgtgtgcgcagtgtctttgggtcaccagaacagctgcttcatccgaaataaagagattttctgcagaactgattataacagtacttttggcataaaatgtgctcgatgtggccatcaagtcagtgcaaatgactggattcggagggctggaaatgacatctaccacctcgcctgctttgcttgcttcttctgcaaaagacagctttctacaggcgaagagttcggcttgatggagaaccaggttctctgtcgcgttcactacgacattacactgctaaacctgcagcaactgtcagacaacggaaatctaatacatttggatggagctctacccattcagtatctcccaaaggcgtctaaaagacctcgtacttcattcacctcagagcagatacagattatgcagacgcacttcatccgagacaagaaccctgatgctgcgactctgcagaggctggcagacacaaccggactgagccgaagagtcattcaggtttggttccagaactgcagagccagacagaagaggatcccccttcatgacagcattcccgaacgggacagatatcagacctctgcaatgccctttctgtccgatttaagcagtacttcatgctctcaggtagatctgagtctgtccatgatttcagcatctgatcctatacattattatgtataattattattgatagggggagtgttttgattgtatgcatacagtatacagttcaataatatctttcaaataaatgattacttagcattaaaagaggcaaaaaagagatttataatgttataactcaagtaaatgctgttcttttaaacttttgcttttagatttacagttttcctcagtggctttggtgcatttctcacaacactatttacatttgcacaacagttaatccatttctcaaaacagctagtcatttgtgcacatcatagtagcacagtagcatagtcctgcgtttttgaactttcacaatacatgtgagttatctttcaagttatctattgattacagtttttctcgattgcttggatgcagttgtcaactgaaactccacattttcaaaacagttaacacacaggcctaaacagcggcactcaaggtcaaaatgacacattttgcttgcaaaaggcacatattgtgtcaaaacatttaacatatgcaacaaaagctagttttaccttcaaactacacaacttgcaaacaagtatatgagctctttcaattaatcattacacaatggacaacaaaatacaaaatacagaactcaaaatgcaccaccattgcttgccattgtagcttatagccaatggcatttgttgtctctatttgggctgtcaaattcgcctttttgcaaagaattggatcaagaataagatgtgctttgattgaatatatattgaattcatgacatttttcaaactgtggctgaaaactgaaatactgtatataaaaataacagacaaaagtgataaaatactgtaaatattagagaaaacacatgtaaactaatatactacagtataggacatagccatattgacctcctccatcaatgctggcacagaacaacacagaccttccatcgtttttataaggtttgcagaatgatggctaattgaagatttgtgtgaaggagtgtcaaaccggtgcttcagtgatttcatactgatgttggtagtttttaatagttaggaacagatggattctgtttggttaccaaaactaaaacaatggagcttggactgcttgaatgacatctgtgttaactgtttggaaaaatggtagggaaaatgtgtcaacccaatgagaaagggtttacacatttgcaagaccggtcctctgctctgctgggatagtgataatgaaaatgaagaggaacctagtttctttaaccaggtcaaagcaaactagaaaaactgtaaaaataatccagccatcaagctcctttatccattggtatgtaataattcgagcaaaaatcggtgtatgtctgtttaatggcaaccacaatttagcagatgtccagtcaaataatgactattactctattcatccactgaacagttcagcggtgaccataaaggcactgtgtaatgtgtgatgcatcgattccatgctctgtcaattaacgccaccattccttgaaataaccttaatgtcttgtattgatttggacacacttaagctttacaaaagtcacaatggccactgattttaaatggcctgtctttcccggtcattcaagtgtaatttagtttctgcgctgcggaccagttgatcaat

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