2025-01-31 06:48:42, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_068216433 824 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio protein shisa-5-like (LOC137488908), transcript variant X1, mRNA. ACCESSION XM_068216433 VERSION XM_068216433.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007133.7) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..824 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="22" gene 1..824 /gene="LOC137488908" /note="protein shisa-5-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns" /db_xref="GeneID:137488908" CDS 70..726 /gene="LOC137488908" /codon_start=1 /product="protein shisa-5-like isoform X1" /protein_id="XP_068072534.1" /db_xref="GeneID:137488908" /translation="
MVYAVMFLLCLSAVIFKVTLALEDCTSYNASRGDLVLCSRRSFFCCGTCDKMYCCNNRKEKITKDELNDCLSNNTLPSHSPHQLDRTVFIEPIVMFLVFIVIVFIIICCSEKRIRNRLMSTTTVTTTQHNPQEGLYSAYQPVFNNPQSPTMPMGQLYAPGPPPSYHEAAGCPCPISQSAYDSGQVLYSIQPTEAQPPLSIDYNPPAYNPAYVNSLKTS"
ORIGIN
attaattctgcagtctccggaaatacgccatgtacactaaacccagcactaaatgggaagagctgcgctatggtgtacgcagtcatgtttcttctgtgcctttctgcggttatattcaaagtgacattagctcttgaggattgtacatcctacaatgccagcaggggtgatcttgtattgtgtagcagaaggtctttcttctgctgtgggacgtgcgataagatgtactgctgcaacaatcggaaggaaaaaataaccaaagatgaactaaacgactgtctttcaaacaacaccttgccaagtcattctccccatcaactggaccgaacagtgttcattgagcccatagtcatgtttttagtgtttatcgtcattgtgttcatcatcatctgctgcagtgaaaaaaggatcagaaacagactgatgtcgacaactacagtcacgactacacaacacaatccccaagaaggcctgtactccgcttaccagcctgtgtttaataatccacaatcacccactatgccaatggggcagctttatgcaccgggacctccgccttcataccatgaggctgcagggtgtccttgtcccatcagccagtctgcatatgacagtggtcaagtcttgtactccatacaaccaacagaagctcaaccaccgctgtccatagattacaatccaccagcttacaaccctgcttacgtgaattcactaaagacctcttaatccacatcaggctgttcctctgcatggctgcaactgttactcgaaaaacaaaacagtgcattagttccatgaacctaacctgagactacagacacgtc
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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