2025-01-31 06:49:01, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_068216263 4611 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio guanylate cyclase activator 1Ab.1 (guca1ab.1), transcript variant X1, mRNA. ACCESSION XM_068216263 VERSION XM_068216263.1 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007133.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4611 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="22" gene 1..4611 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /note="guanylate cyclase activator 1Ab.1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, 3 long SRA reads, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" CDS 27..566 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /codon_start=1 /product="guanylate cyclase activator 1Ab.1 isoform X1" /protein_id="XP_068072364.1" /db_xref="GeneID:393629" /db_xref="ZFIN:ZDB-GENE-040426-1577" /translation="
MYSPYIKSALFVHGQVSESNTRAQDTGSSKHAGNWTISVVLEVGGRLDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA"
polyA_site 4611 /gene="guca1ab.1" /gene_synonym="gcap5; guca1e; zgc:66243" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
ttattatgattgttttaagatgctaaatgtatagtccatatattaaatctgcactgtttgttcatggacaggtttctgagtcaaacactcgagcccaggacaccgggtcaagcaaacacgctggaaactggactatatcagtggttctcgaagtcgggggtcgtctggatggctgtattgatttcatggagtatgtggcagctctgagtctggtcctgaaaggcggtgttcagcagaagctgcgctggtatttcaagctcttcgatatggacggcagcggctgtatcgacaaggacgaactgctgctcatcttcaaggcggttcaagccattaatggagccgagccggagatctctgcagaggacttggctgatatggtgtttaacaagattgatgttaatggagacggcgagttgtctctggaagagttcatggagggcatctcggcggatgagaagatctcagagatgctgacccagagtttggatctgacccggatcgtgagcaacatctacaacgactcctacatcgagcaggaggccgagatcatcgaggatcaagcatgacaacactgagagtctggagcggacgcttttattggctccttcccagagtagcgagtgccgagtgtaaaacatagatcggccaaagctctgggtctgtgcactagattatatcatctgaacgcacaaaatgctccagtactgtgagtgtgtagttcagcctgagggtggcgctctaacactgacacacaggctgtaagtacacaccacacatgcgtagaacgcttctagaaatgccttaatgtagagtttaatgcctctgaatgctgatttagagttttgaacaagcgtaggaaatcttggtcgcactttattttaatgtacaattcacgctaacaacaaaccattcactaagaatatagctcaatacactactgattagctgcttaataatagttagtaggttagtagttgggtattgggttggattagagatgtaggatatgatcaaacatgctaatatctcctaataatgctaagccagtcataaatgctgtgaattgttacttaaacttagtgttactaaatacttatttgcattatatgtgagcatatgtaaagatgtatatatttttattaatctactacgttgttaaggaagtagcaattactgaagaagatgacgaatcgagtcagagcggtttacgaggtaatgtgaagaaagcagagcagtctgcagttccgtttttcgccaccgatttacactgtagttttatgggggcgctgttgagctcagtgcttagcctcacttaaagggccagttcacccaaaaatgataatattctcatcatttcttcactctttacaggtttaaacctgtttaactttatttattctgttaaactcaaaggaacatatactgaaaaagctggaaacctttaaccattgacattcatagtattttatttcggttttcctactactaagtgcttttcactttcctcaaaaaacaaaactgaagaaagaaactcacacattttttaaacaaaatcacagcagttttctgaacatatgaaccgaattttccaatatatatttcttttattgcttaaatcaggggtgcccaaacttcttcgtatgaagggccaaaaaccgaatatcattgagagtcgcgggctgaagatggccattgggaatttcctaatttatttcagaatatttcaaaataaatagaaaacattacataaaatcatattaaataatgctggataacattttaaatgataaattatttcaataaaaacaatcagatttataacagggctgctgcagtgaatcgattaaattgataaaaatcgattactaaaagcgttggcaatgaatttcataatcgatttgttgtgtcgcgtgacacgggtatggttgattattaaaaagcacttcagttgaaaggagttcaacagcaggagcctacttttgttctgttttgaagtgagggccgtaaagtccctggtgctgatgtttcactcgttatccagcttgtcaagcatgacaagttagcattaactcatttacttttagagcggaaataaaaaaaatgaacctgagtttggcgcggtgtctggcgctgggcagagctctcagtaagggaccgtctgaaaagtgcttctttatttttttttcccccaaaaacaaaaccaacttaaccccgctgagaaagacgtgtcatattatcacaattatgcagcgttttaaccgcctaatgcttattttatgttttagacatgtaaactcacagacttactagtaaaacaaaacatttagagtttgtaaaacacacaaggaagtctaacaatccattcaaatataatttgctgatgtgatttattcatatcagatacacattacacatagtgaacgtaactttaaagctgaatctactcttctctaaggtcaccagccacttacttgcatgtgtttaggcggtaactggtgaatttaccgccgtattctgcttttatgaatgaggagaactggtatgtgaactggtaaaacttctgcttttgtcttttcggttagaaattaatgctttttttattcgattcatcgaaaaaaaatctagattaatcaattataaaaataatgattagttgcagccctaatttataacacagcggagttcagtgctgaatacactagtcaagcagaatctgcctttgacttaatttgctcaccaaactctctgcattgtcgggtgacggtatttgcatttaaactaaatctgatttacttacaccatttaattgacactggtaatttcagctagcttttaacaataaaacaaacaaacaaacaaacggttgcattaaatgtgaataaatgtcgataccatccccatcattctcatcactcttctcagatgggatggtgggccaaatcaaaggttatcatgggccaactttgggccctagtttgagcatctctggtttaaatagactataaaaaaacaaatatatgtactgcaatattgaagacatttagagatgaattcttgagttaatatagagctctatgtcttgtctaagggataaatattctgatatattttcttaagacttgcaaaatgccaaatgtgagtataaatctgcagtggtgaatctgaaagagcgtgccgttaatgagcagttagcggtgcgctttctgtaatgatgcctgtgaatgctgatttagcatgatctcccaaatgcacagactgcactgtaatgataagcatgctgaagtggtgaagttgcgagtggctcatgatgagcatttatatacaggctgcgaattaaacagtaaattgtattgaattatgcatcggggaaggggttcgcttttcttaaacgtactctgtgatgatagattgtctaatacatgctgcagtgaatcaaatgtatgtttttaaataaattacatctaattcatgaataaaacgtatttaagttttcagcgttttaaaggatatttagtgtattttgacctgcagtaacatctgattagctatttcagaggctactgttggtcaaactacaaactatgcgtctaatattactttacttttacgcgatatttagaaacaagcacatattttatgagaaaagtaacttgtgaacacttctgatgtccatcggggctctgaattttccgttttctgcatatttccccacatggactgattgattagtgtgattattcactcacaatggtttgcaccattataggggtggtcaaatgtacatttattttaattattaatatttttatttaaaatacagatcagagaaaacaatttctcactgtattaaaggcctgacccctatatacatcttgttttgatttcttcagtggggatcaagcattaattatgacttaattagggttaaacaaccccccccccccccaaaccctcctgtaattcacaccctgacattaccatgtctcaagagttgtagtttagtaaatctgctgtggacaataagaattaatctcagaagatccgttcatctgtggttttccaccagcatgtcagctccggtttaacattggaaagcaaagaaatattaatacttgttagtttgtcattttgaactctttctccaccattgagcagagaactcgtctattaggagaaactgaagagttttaggtgtgttaggtgcattgcagtataggaatccctaatgcaggtcctgaatcatttactatatacttcagtctgtgtctgctgggtgtgaaatagaagataatctgacaaagtgaaagcacatttgcttaacattaacattaagagagtgatgaaactatactttggcgtacttgcatctttatgcatatatatgtatatatatatatatgtgtgtttgtgtgtgtgtgtgttcatatgtttgtgtgtctgtttgcttgtgtttgcatgtgtgtgtgttatatatgttgaaaatgcactactttggaaaaaaattccctttgtttgtcaaagatgttgcatttgtgatgaaatctgtctgaaatcaagtggtgataaaacatgaacacatgaagataaaataaaatgctgttttgattaaaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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