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2025-01-31 06:49:01, GGRNA.v2 : RefSeq release 227 (Nov, 2024)

LOCUS       XM_068216263            4611 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio guanylate cyclase activator 1Ab.1
            (guca1ab.1), transcript variant X1, mRNA.
ACCESSION   XM_068216263
VERSION     XM_068216263.1
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007133.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4611
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="22"
     gene            1..4611
                     /gene="guca1ab.1"
                     /gene_synonym="gcap5; guca1e; zgc:66243"
                     /note="guanylate cyclase activator 1Ab.1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 3 long SRA reads, 1 Protein, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 4 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:393629"
                     /db_xref="ZFIN:ZDB-GENE-040426-1577"
     CDS             27..566
                     /gene="guca1ab.1"
                     /gene_synonym="gcap5; guca1e; zgc:66243"
                     /codon_start=1
                     /product="guanylate cyclase activator 1Ab.1 isoform X1"
                     /protein_id="XP_068072364.1"
                     /db_xref="GeneID:393629"
                     /db_xref="ZFIN:ZDB-GENE-040426-1577"
                     /translation="
MYSPYIKSALFVHGQVSESNTRAQDTGSSKHAGNWTISVVLEVGGRLDGCIDFMEYVAALSLVLKGGVQQKLRWYFKLFDMDGSGCIDKDELLLIFKAVQAINGAEPEISAEDLADMVFNKIDVNGDGELSLEEFMEGISADEKISEMLTQSLDLTRIVSNIYNDSYIEQEAEIIEDQA"
     polyA_site      4611
                     /gene="guca1ab.1"
                     /gene_synonym="gcap5; guca1e; zgc:66243"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
ttattatgattgttttaagatgctaaatgtatagtccatatattaaatctgcactgtttgttcatggacaggtttctgagtcaaacactcgagcccaggacaccgggtcaagcaaacacgctggaaactggactatatcagtggttctcgaagtcgggggtcgtctggatggctgtattgatttcatggagtatgtggcagctctgagtctggtcctgaaaggcggtgttcagcagaagctgcgctggtatttcaagctcttcgatatggacggcagcggctgtatcgacaaggacgaactgctgctcatcttcaaggcggttcaagccattaatggagccgagccggagatctctgcagaggacttggctgatatggtgtttaacaagattgatgttaatggagacggcgagttgtctctggaagagttcatggagggcatctcggcggatgagaagatctcagagatgctgacccagagtttggatctgacccggatcgtgagcaacatctacaacgactcctacatcgagcaggaggccgagatcatcgaggatcaagcatgacaacactgagagtctggagcggacgcttttattggctccttcccagagtagcgagtgccgagtgtaaaacatagatcggccaaagctctgggtctgtgcactagattatatcatctgaacgcacaaaatgctccagtactgtgagtgtgtagttcagcctgagggtggcgctctaacactgacacacaggctgtaagtacacaccacacatgcgtagaacgcttctagaaatgccttaatgtagagtttaatgcctctgaatgctgatttagagttttgaacaagcgtaggaaatcttggtcgcactttattttaatgtacaattcacgctaacaacaaaccattcactaagaatatagctcaatacactactgattagctgcttaataatagttagtaggttagtagttgggtattgggttggattagagatgtaggatatgatcaaacatgctaatatctcctaataatgctaagccagtcataaatgctgtgaattgttacttaaacttagtgttactaaatacttatttgcattatatgtgagcatatgtaaagatgtatatatttttattaatctactacgttgttaaggaagtagcaattactgaagaagatgacgaatcgagtcagagcggtttacgaggtaatgtgaagaaagcagagcagtctgcagttccgtttttcgccaccgatttacactgtagttttatgggggcgctgttgagctcagtgcttagcctcacttaaagggccagttcacccaaaaatgataatattctcatcatttcttcactctttacaggtttaaacctgtttaactttatttattctgttaaactcaaaggaacatatactgaaaaagctggaaacctttaaccattgacattcatagtattttatttcggttttcctactactaagtgcttttcactttcctcaaaaaacaaaactgaagaaagaaactcacacattttttaaacaaaatcacagcagttttctgaacatatgaaccgaattttccaatatatatttcttttattgcttaaatcaggggtgcccaaacttcttcgtatgaagggccaaaaaccgaatatcattgagagtcgcgggctgaagatggccattgggaatttcctaatttatttcagaatatttcaaaataaatagaaaacattacataaaatcatattaaataatgctggataacattttaaatgataaattatttcaataaaaacaatcagatttataacagggctgctgcagtgaatcgattaaattgataaaaatcgattactaaaagcgttggcaatgaatttcataatcgatttgttgtgtcgcgtgacacgggtatggttgattattaaaaagcacttcagttgaaaggagttcaacagcaggagcctacttttgttctgttttgaagtgagggccgtaaagtccctggtgctgatgtttcactcgttatccagcttgtcaagcatgacaagttagcattaactcatttacttttagagcggaaataaaaaaaatgaacctgagtttggcgcggtgtctggcgctgggcagagctctcagtaagggaccgtctgaaaagtgcttctttatttttttttcccccaaaaacaaaaccaacttaaccccgctgagaaagacgtgtcatattatcacaattatgcagcgttttaaccgcctaatgcttattttatgttttagacatgtaaactcacagacttactagtaaaacaaaacatttagagtttgtaaaacacacaaggaagtctaacaatccattcaaatataatttgctgatgtgatttattcatatcagatacacattacacatagtgaacgtaactttaaagctgaatctactcttctctaaggtcaccagccacttacttgcatgtgtttaggcggtaactggtgaatttaccgccgtattctgcttttatgaatgaggagaactggtatgtgaactggtaaaacttctgcttttgtcttttcggttagaaattaatgctttttttattcgattcatcgaaaaaaaatctagattaatcaattataaaaataatgattagttgcagccctaatttataacacagcggagttcagtgctgaatacactagtcaagcagaatctgcctttgacttaatttgctcaccaaactctctgcattgtcgggtgacggtatttgcatttaaactaaatctgatttacttacaccatttaattgacactggtaatttcagctagcttttaacaataaaacaaacaaacaaacaaacggttgcattaaatgtgaataaatgtcgataccatccccatcattctcatcactcttctcagatgggatggtgggccaaatcaaaggttatcatgggccaactttgggccctagtttgagcatctctggtttaaatagactataaaaaaacaaatatatgtactgcaatattgaagacatttagagatgaattcttgagttaatatagagctctatgtcttgtctaagggataaatattctgatatattttcttaagacttgcaaaatgccaaatgtgagtataaatctgcagtggtgaatctgaaagagcgtgccgttaatgagcagttagcggtgcgctttctgtaatgatgcctgtgaatgctgatttagcatgatctcccaaatgcacagactgcactgtaatgataagcatgctgaagtggtgaagttgcgagtggctcatgatgagcatttatatacaggctgcgaattaaacagtaaattgtattgaattatgcatcggggaaggggttcgcttttcttaaacgtactctgtgatgatagattgtctaatacatgctgcagtgaatcaaatgtatgtttttaaataaattacatctaattcatgaataaaacgtatttaagttttcagcgttttaaaggatatttagtgtattttgacctgcagtaacatctgattagctatttcagaggctactgttggtcaaactacaaactatgcgtctaatattactttacttttacgcgatatttagaaacaagcacatattttatgagaaaagtaacttgtgaacacttctgatgtccatcggggctctgaattttccgttttctgcatatttccccacatggactgattgattagtgtgattattcactcacaatggtttgcaccattataggggtggtcaaatgtacatttattttaattattaatatttttatttaaaatacagatcagagaaaacaatttctcactgtattaaaggcctgacccctatatacatcttgttttgatttcttcagtggggatcaagcattaattatgacttaattagggttaaacaaccccccccccccccaaaccctcctgtaattcacaccctgacattaccatgtctcaagagttgtagtttagtaaatctgctgtggacaataagaattaatctcagaagatccgttcatctgtggttttccaccagcatgtcagctccggtttaacattggaaagcaaagaaatattaatacttgttagtttgtcattttgaactctttctccaccattgagcagagaactcgtctattaggagaaactgaagagttttaggtgtgttaggtgcattgcagtataggaatccctaatgcaggtcctgaatcatttactatatacttcagtctgtgtctgctgggtgtgaaatagaagataatctgacaaagtgaaagcacatttgcttaacattaacattaagagagtgatgaaactatactttggcgtacttgcatctttatgcatatatatgtatatatatatatatgtgtgtttgtgtgtgtgtgtgttcatatgtttgtgtgtctgtttgcttgtgtttgcatgtgtgtgtgttatatatgttgaaaatgcactactttggaaaaaaattccctttgtttgtcaaagatgttgcatttgtgatgaaatctgtctgaaatcaagtggtgataaaacatgaacacatgaagataaaataaaatgctgttttgattaaaa
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]