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2025-01-31 07:04:51, GGRNA.v2 : RefSeq release 227 (Nov, 2024)

LOCUS       XM_021476748             919 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio si:dkey-27h10.2 (si:dkey-27h10.2),
            transcript variant X3, mRNA.
ACCESSION   XM_021476748
VERSION     XM_021476748.2
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007112.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_021476748.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="1"
     gene            1..919
                     /gene="si:dkey-27h10.2"
                     /note="si:dkey-27h10.2; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:100150349"
                     /db_xref="ZFIN:ZDB-GENE-090313-296"
     misc_feature    1
                     /gene="si:dkey-27h10.2"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             29..751
                     /gene="si:dkey-27h10.2"
                     /codon_start=1
                     /product="uncharacterized protein si:dkey-27h10.2 isoform
                     X3"
                     /protein_id="XP_021332423.1"
                     /db_xref="GeneID:100150349"
                     /db_xref="ZFIN:ZDB-GENE-090313-296"
                     /translation="
MCYASLHLFLADSPNPSPISEEPQTTSTTDNPLNKVPQVSTNATIQTTTRTRTSITTCTTTTTKAPEPKKHGPAYIIILVIAVLCITGVVVYCCLQKNSRKYSVDLHPKKEDAQIPLSTVDAEVFDTTSEKDLQTFAPVEPVKDPDIGKEAEKPEEGKEIPDVKQENQQNFSTPEATVIPNDKKDELTVVDLTDAEPAISTKTSMESLDDTLNENNSNNTRIEGIANGYEFIEIFLDGPL"
ORIGIN      
atattacaagatagcatcttttctcaagatgtgctacgcatcacttcatctctttcttgcagattcacccaatccttcaccaatctctgaagaaccgcagaccactagcaccacagacaatcctctgaacaaagtcccacaagtcagcacaaatgctacgattcaaacaacaaccagaacaagaaccagcataacaacttgtacaacaaccacaactaaagcaccagagcccaaaaaacatggaccagcttacataattattctggtcattgctgttctgtgcatcactggagtagtagtttactgctgccttcaaaagaactccaggaagtattctgtcgacttgcaccctaaaaaagaagatgctcagattccactcagcacagtggatgcagaagtgtttgacaccacgtcagaaaaagatttgcaaacatttgctccagttgagccagtaaaggaccctgacattgggaaggaagctgaaaagcctgaggaaggaaaagaaatacctgatgttaaacaagaaaaccaacagaatttttccactcctgaggccacggtgattccaaatgacaaaaaagatgaactgactgtagtggatctgactgatgcagaaccagcgatctcaaccaaaacctcaatggaatcactagatgatactcttaatgaaaacaacagcaacaacacaagaattgaaggcattgccaatgggtatgaattcattgagatctttcttgatggtccactctaaaataaatcaactccttcccaacaatttacaatgatctttgaacctgattgatggatttttgactctgcaacatggaaaacaacttcttcatttttacctgtgtgtaagtctacttttcagaacaatgttagttggatatatatatatatatatatatatatatatata
//

by @meso_cacase at DBCLS
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]