2025-01-31 07:04:51, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_021476748 919 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio si:dkey-27h10.2 (si:dkey-27h10.2), transcript variant X3, mRNA. ACCESSION XM_021476748 VERSION XM_021476748.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007112.7) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_021476748.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..919 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="1" gene 1..919 /gene="si:dkey-27h10.2" /note="si:dkey-27h10.2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:100150349" /db_xref="ZFIN:ZDB-GENE-090313-296" misc_feature 1 /gene="si:dkey-27h10.2" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 29..751 /gene="si:dkey-27h10.2" /codon_start=1 /product="uncharacterized protein si:dkey-27h10.2 isoform X3" /protein_id="XP_021332423.1" /db_xref="GeneID:100150349" /db_xref="ZFIN:ZDB-GENE-090313-296" /translation="
MCYASLHLFLADSPNPSPISEEPQTTSTTDNPLNKVPQVSTNATIQTTTRTRTSITTCTTTTTKAPEPKKHGPAYIIILVIAVLCITGVVVYCCLQKNSRKYSVDLHPKKEDAQIPLSTVDAEVFDTTSEKDLQTFAPVEPVKDPDIGKEAEKPEEGKEIPDVKQENQQNFSTPEATVIPNDKKDELTVVDLTDAEPAISTKTSMESLDDTLNENNSNNTRIEGIANGYEFIEIFLDGPL"
ORIGIN
atattacaagatagcatcttttctcaagatgtgctacgcatcacttcatctctttcttgcagattcacccaatccttcaccaatctctgaagaaccgcagaccactagcaccacagacaatcctctgaacaaagtcccacaagtcagcacaaatgctacgattcaaacaacaaccagaacaagaaccagcataacaacttgtacaacaaccacaactaaagcaccagagcccaaaaaacatggaccagcttacataattattctggtcattgctgttctgtgcatcactggagtagtagtttactgctgccttcaaaagaactccaggaagtattctgtcgacttgcaccctaaaaaagaagatgctcagattccactcagcacagtggatgcagaagtgtttgacaccacgtcagaaaaagatttgcaaacatttgctccagttgagccagtaaaggaccctgacattgggaaggaagctgaaaagcctgaggaaggaaaagaaatacctgatgttaaacaagaaaaccaacagaatttttccactcctgaggccacggtgattccaaatgacaaaaaagatgaactgactgtagtggatctgactgatgcagaaccagcgatctcaaccaaaacctcaatggaatcactagatgatactcttaatgaaaacaacagcaacaacacaagaattgaaggcattgccaatgggtatgaattcattgagatctttcttgatggtccactctaaaataaatcaactccttcccaacaatttacaatgatctttgaacctgattgatggatttttgactctgcaacatggaaaacaacttcttcatttttacctgtgtgtaagtctacttttcagaacaatgttagttggatatatatatatatatatatatatatatatata
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by
@meso_cacase at
DBCLS
This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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