2025-01-31 06:36:37, GGRNA.v2 : RefSeq release 227 (Nov, 2024)
LOCUS XM_021467783 857 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio epidermal growth factor receptor pathway substrate 8b (eps8b), mRNA. ACCESSION XM_021467783 VERSION XM_021467783.2 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007129.7) annotated using gene prediction method: Gnomon, supported by EST evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_021467783.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..857 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="18" gene 1..857 /gene="eps8b" /note="epidermal growth factor receptor pathway substrate 8b; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 EST, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns" /db_xref="GeneID:564779" /db_xref="ZFIN:ZDB-GENE-060503-164" CDS 58..777 /gene="eps8b" /codon_start=1 /product="epidermal growth factor receptor kinase substrate 8-like protein 2" /protein_id="XP_021323458.1" /db_xref="GeneID:564779" /db_xref="ZFIN:ZDB-GENE-060503-164" /translation="
MLEPSNSDLQHVRIRYHFVARNANELTVQQGDELEVLENNQQWWLLRNRSGQSGYVPCNVLEEVKPEEQQYNRAALFSSQAVNPYKGTTTSPVPVNHAVVLEMNKSSRDKDNRDQQKEVNDELLKRITDNKAQPPARNFRVERSSRSIRITDESQPFEVHAWLNAKGFSRPVVECLGILNGAQLFSLSKDELKAVCGDEGSRVYSQITVQKAQIERGNGDTELQEIMRRRQQEVDSTWD"
misc_feature 91..249 /gene="eps8b" /note="Src Homology 3 domain superfamily; Region: SH3; cl17036" /db_xref="CDD:473055" misc_feature order(103..105,109..111,118..120,130..132,181..186, 226..228,232..237) /gene="eps8b" /note="peptide ligand binding site [polypeptide binding]; other site" /db_xref="CDD:212690" misc_feature 505..699 /gene="eps8b" /note="SAM domain of EPS8-like subfamily; Region: SAM_EPS8-like; cd09540" /db_xref="CDD:188939" ORIGIN
cgcagcggctcacggcgcgcttgtagcaaagccatcggcaggctcttctgaaaaaccatgctcgagccgtctaacagcgacctccaacatgtcaggatccgttatcactttgtggcgcgcaatgccaacgagctcacggtgcagcagggcgatgagctggaggtcttggaaaacaaccaacagtggtggttattgaggaaccgcagtggtcagtcaggctatgtgccatgtaatgtgctggaagaggtcaaaccagaagagcagcagtacaaccgagcagctctattcagcagccaggctgtgaatccttacaaaggtaccaccaccagccctgtacctgtaaatcacgccgtggttttggagatgaataaatcctcccgggataaagataaccgcgaccagcaaaaggaggtaaacgatgagctgctgaagaggataacagacaataaagctcaacctccggctcgaaacttccgggtggaacgctctagcagatccattcgcatcacagatgaatcgcagccctttgaggtccacgcttggctcaatgcgaagggattttctaggccggtggtggagtgtctggggatcctgaacggagctcaactcttctctctgagtaaggatgagctgaaagctgtgtgcggggacgagggttcacgtgtctacagtcagatcaccgtgcagaaagctcaaatagagaggggtaatggcgatacagagctacaggagatcatgaggcgacggcaacaggaggtggactcaacctgggactgattacagtcaatcatggccttatttcatcacgttttcttcaatgctcttgttcaccctacaatcaacagccacccagagga
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This page is licensed under a
Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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