LOCUS       XM_009299790            1975 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio zmp:0000001048 (zmp:0000001048), transcript
            variant X3, mRNA.
ACCESSION   XM_009299790
VERSION     XM_009299790.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007114.7) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_009299790.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1975
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="3"
     gene            1..1975
                     /gene="zmp:0000001048"
                     /note="zmp:0000001048; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     23 samples with support for all annotated introns"
                     /db_xref="GeneID:556557"
                     /db_xref="ZFIN:ZDB-GENE-140106-8"
     CDS             160..930
                     /gene="zmp:0000001048"
                     /codon_start=1
                     /product="retinol dehydrogenase 8 isoform X2"
                     /protein_id="XP_009298065.1"
                     /db_xref="GeneID:556557"
                     /db_xref="ZFIN:ZDB-GENE-140106-8"
                     /translation="

MGTRKVLVTGCSSGIGLAVAVRLAKDELRRFKVNNAGVGMIGPLECQSMSSMQDLFNTNFFGLVRLVKELLPQMKKRQSGHIIVMSSVLGIQGLLFNDLYAASKFAVEGFCESLAVQAMKFNVKMTLVEPGPVVTEFERKVYEEAETMDLSETDEETAQIFRQIYLPYSRRVFHSIGQTPEEVAEQTTRLILSKNPPFRHQTNRLYMPLTAMKHADPTGRLPIDAFYKMIFQHDRIFSASLNIMRILNRKIGKSAA"

     misc_feature    169..777
                     /gene="zmp:0000001048"
                     /note="A large family of proteins that share a
                     Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The
                     NADB domain is found in numerous dehydrogenases of
                     metabolic pathways such as glycolysis, and many other
                     redox enzymes. NAD binding involves numerous...; Region:
                     Rossmann-fold NAD(P)(+)-binding proteins; cl21454"
                     /db_xref="CDD:473865"
     misc_feature    order(187..189,193..198,202..204,262..270,412..420,
                     457..459,469..471,547..558)
                     /gene="zmp:0000001048"
                     /note="NAD(P) binding site [chemical binding]; other site"
                     /db_xref="CDD:187535"
     misc_feature    order(334..336,418..420,457..459,469..471)
                     /gene="zmp:0000001048"
                     /note="active site"
                     /db_xref="CDD:187535"
     polyA_site      1975
                     /gene="zmp:0000001048"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ctgaggagcaacgtaagctctgcaacatgatttgttttctatcagaggcgctcgagcagagcagaacaggtgtctgtgggcgacaggagcagctctgtcagcgggacacgggtctgtacctgctaacaaacagacggtttactcgcattcactgaagttatggggacaaggaaagttctggtgacaggttgctcctctggaattgggttggcggtggctgtccgtctggccaaagatgaattaaggcgcttcaaggtgaataatgccggcgtgggtatgattggtcctttggagtgccagagtatgagctcaatgcaggatctcttcaatacgaatttctttggtctggtgagactggtcaaagagctgctgccccaaatgaagaagcgtcagagtggacacatcatagtgatgagcagcgttctgggcatacaggggctactcttcaatgatttgtatgctgcttccaaatttgctgtagaaggattttgtgagagtcttgctgtacaagctatgaagttcaatgtcaagatgactttagtggagcctggcccagttgtaactgagtttgagaggaaagtatatgaagaggcagagacgatggatctgtctgagaccgatgaggagacagctcaaatcttccgacagatctacctgccatattcacgcagagtttttcattcaatcggacagacgcctgaggaggttgcagagcaaactacccggctgattttgtctaagaatcctccatttcgtcatcagaccaatcgtttgtacatgccattgactgccatgaaacatgctgatccaaccggacgactacccatagatgcgttttataaaatgatcttccagcatgaccgcatcttcagtgctagtctaaatattatgcgcatacttaacagaaaaataggtaaaagtgctgcctaaaacacactttgggccctatcatacacctggcgcaatttggcgcaaggtgcgacgcaattgttgtttgctagtttcagcttggcgcaatagtcgttttgatgttttgcgccaagctgttcgaatagcaaatggatttgcgctcatatgtgcacccataggcgttcttggcagggttctgccactctggtcttgtaaattcttgttttggtggcagagctcggacactacccatgtctggtcctgtttctgtctctgtgtgtgcgcgcgccgtcgtgggtgtacgcagagtgtgcgcgctcccgcttgatgcggccgcgcgcgctctgcgtccttcagacgtgcgcgctcttgtactcgtgtttgtgttttcgtctgtcagcagcgtggtgtttcattcccagcgtctcagtcttgttggtttcggttttggtcggcgctgggatgaagcatgcacgctgcgtgtatgagcgcacggtgagtgttttcattcatcgtgtgctcgtgtcttgagtctgttgtcaaagcacgtggcttgttgtttacattgtggtcacgggcttttgtcatgtgcttcagtgttgtgtttgtcttgtcatgaacatgcgcttaatgagttctctcattggctgcatgttcttgtcctgttttatgtgagcgcatggctagtctcgtctctgtcatgcgctctcccgtctattgtctggtcccacccaccttgttatcctgtttgtaattattattttcacctgtccgcctgtctgttaattggtttgtctttcctatttattctcctagtgtgcaatgttctgtgctggtccgttgttgattgtttcctttccctgttgtatgaggtctgctgattccggttctacaacagtggttttgtgttttgcctagttctaggcaaaacacaagttttgtgtcttgcctagttctagaccaagtctagtttagtatataatataatgttgtgtttttccccacatggggagatttgagttttgtttttgttttattttttcaataaaatccttcatttcctgca

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