LOCUS       XM_009294000            5257 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio pbx/knotted 1 homeobox 1.2 (pknox1.2),
            transcript variant X5, mRNA.
ACCESSION   XM_009294000
VERSION     XM_009294000.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007112.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_009294000.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5257
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="1"
     gene            1..5257
                     /gene="pknox1.2"
                     /note="pbx/knotted 1 homeobox 1.2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 2 long SRA reads, 4 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 37 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:170445"
                     /db_xref="ZFIN:ZDB-GENE-020123-1"
     misc_feature    1
                     /gene="pknox1.2"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             126..1463
                     /gene="pknox1.2"
                     /codon_start=1
                     /product="homeobox protein PKNOX1"
                     /protein_id="XP_009292275.1"
                     /db_xref="GeneID:170445"
                     /db_xref="ZFIN:ZDB-GENE-020123-1"
                     /translation="

MMTSPSVSMEDYQEAEQMQVGEPTAGQVEERLEEEEEEEEEEERDEEEEDSGSAPSEPQTPMEVYKSAIYRHPLFPLLALLFEKCEQSTQSSECVTSASFDVDIENFVRNQEKEGKAFFSEDPDLDNLMVKAIQVLRIHLLELEKVNDLCKDFCSRYIACLKTKMNSETLLSGDPGSPYSPSPTQPQNPFTGAMSPQGIVVPASALQQGNVTVTAVNPTQMVTGGTVYQPVTVVTPQGQVVTQTLSPGTVRIQNSQLQLQLNQDLSFFSQEDGSSKAKRGILPKHATNVMRSWLFQHIGHPYPTEDEKKQIALQTNLTLLQVNNWFINARRRILQPMLDASSSDTPKSKKKTPQTRPLQRFWPNSLASSVSQQQVTMEDGTTVTVGVGEDGLQTLSSDGATLAMQQVMMGGHSEDDDDEDDEEDEDTDPSHSDMSRLGLETSDSL"

     misc_feature    396..653
                     /gene="pknox1.2"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(951..965,969..971,1029..1031,1047..1049,1086..1088,
                     1092..1097,1104..1109,1113..1121)
                     /gene="pknox1.2"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:238039"
     misc_feature    order(957..959,966..968,1095..1097,1104..1109,1116..1118)
                     /gene="pknox1.2"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1005..1121
                     /gene="pknox1.2"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     polyA_site      5257
                     /gene="pknox1.2"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ggaagaactgcgggtcccgattgctgcagccgcttgtcattgtgacgaagattggcactaagttatagcggtgctgaagatcagctttatagaatgccccagcgttgtccacggcaacagtaactatgatgacatccccatcggtgtccatggaggattaccaagaggctgaacagatgcaagtgggagaaccgacagcgggacaagtggaggagaggctggaggaagaggaagaagaggaggaggaggaggagagagacgaagaagaagaagacagcggctcggctccgtctgagccacaaactcctatggaggtctacaagtcagccatttacagacacccgctgttccccctgttggcgctgctctttgagaaatgcgagcagtccactcagagctcggagtgcgtgacctcggccagtttcgatgtggatatcgagaactttgtgcgaaaccaggagaaggaaggcaaggctttcttcagcgaggaccctgatttggacaatctgatggtgaaggccatccaagtgttacgaattcacctgctggagcttgagaaggtaaatgacctgtgcaaagatttctgcagccgctacatcgcctgcctcaagaccaagatgaacagcgagactctgcttagcggagatcctggaagcccctattctccatcaccgacacagccgcaaaacccattcactggagccatgagtccacaaggtatcgtagtgccagcatctgctttacaacagggcaatgttactgtcacagcggtcaaccccacacagatggtaacaggtggtacagtatatcaacccgttacagtagtcactccacaggggcaggtggtcacacaaactctgtcacctggaacagtacgaatccagaactcacagcttcagctgcagctcaaccaggatctgagttttttcagtcaggaggacggttcgtctaaagccaagagaggcatccttccaaaacacgccaccaacgtcatgcgttcatggcttttccagcacattggtcacccttatccaacagaagatgagaagaagcagatcgccctgcagactaacctcacgctattgcaggtcaacaactggtttattaacgcccggcgacggatccttcagcccatgttggacgccagctcttcagacacacccaagagcaagaagaagacgccccaaacgcggcctttacagcgcttctggccaaactcactcgcctcttctgtgtcccagcagcaggtcaccatggaggacggcaccacagtaaccgtgggtgtgggggaagacggcctgcagacgctttcatcagatggcgccacgctggccatgcagcaggtcatgatgggaggccacagtgaggatgatgacgatgaagatgatgaagaggacgaggacaccgatccgtctcactccgacatgagcagactgggcctggagaccagcgactcgctgtagtaggactgaaccacacacactcgcacactcacgttagcattgagagagacaacagagcactaagaaggagatgtcccacacaaacacacacacacacacacacctcagctgcacacgtcctccagctgtcaaacagcccgcttggagaacagagaaaagggcttaaagccacacacacaccacaaaacgaccccccctccccacacacacacacacacacacaggtcaaaaaaacaagacacaagcacaagtctctctcacgcaaagcatttctgacacagattagccgagtgcactttttgtatgatactgtaaacttaaagaaagtgttcaaagcacatttcgaaagagctaaaaaaggaaggaaattgatttaaaaaaaccagttgttaatgctggatgattgggttgtgcttatcctgacggtctgggatatttccacaacgagatttcgtctcttgcatgcctgtgtttgctttaatcaggcaccaggaaaaagaaggaactatttttatagtacactgtcacagatgatcggtgccaatatgtttgttttctccgtttgtttgttttttgctctggtttgctatgttttgtaaggagtatttatgtatgaaaaagacttttaacctgctcaccctgcttttttttggatgggtggatttggattgtggtaactacttagtataaagtacacaatgatttgtatgctgaaggcagagttgctgacgatgccttatgtttttacatttcgaatgccacaatgtgagacagtctcatatctgtggaaacttatttccaccaccgaatgaacaaaaatgtaattaattattgttctcagaattgtgaggttatatatatatatatatatatatcacaatttggacttttctgtttctatttaagaattacaaacttgtctcataattttgagtttctctttgaattcttagcttgacttggcctattctgagttgatcttttgcataattcaacgtttattgcgattctaagcattgtagccattctgagtttatcttgcacagttttgagcttattacaattctcagtttatctttgcgctatcctgagtttattttaattctgagtttattttaattctgagtttatcttgcgcaatcctgagtttattttaattctgagtttatcttgcgcaatcttgagtttattttaattctgagtttatcttgcgcaatcctgagtttattttaattttgagtttatcttgcgcaatcctgagtctattttaattctgagcttatctttcgtaatcttgtgcaaatttagattttacctcattcacaattctaagtttatatcttgcgcaattctgattttattgtaattcttagtttatcttgcacatttttgagcttattgcaattctgagttgattgtaattctgagtttcttgcgtaaattttgagttcatctcattcgcaagtctaagtttatcgcttaccaatcctgagtttattgtagttcttagtttatcttgctcaattctgagcttattgcaattctgagttgatctaacgcaatctgagtttgtcataattctgagcccatcttgcgcaattccgagtttattgcaattctgagcttatcttacgcagttctgagtttattgtaaatctaattttatctcttacccaatcatgagtttattttaattctgagcttatcttaagcaattctgagtttgtcgtaattctacgcttatcttgcgcaaattttgagtttatctcattcacaagtctaagttcatctcttacctaatcctgagtttattttaactctgagcttatattacgcagttttgagttaattgtaattctgagtttatcttgcacaatcttgagtttattgtaactcttaggtcatcttgcacaatcctgagtttattgtaattctgagtttatcttgcgcaatcctgagtttattgtaattctgaagttatcttgtgcaatcctgagtttattctaattctgagtttatctagctcaattctgagtttattgtaattctaaggttagcttgtgcaatttcgagtttatcttgcgcaattctgagtccactaaaattctgagcttatcttgtgctgttctaagtttatatcttgtgcagtcctgagtttattgtaattctgagctgagtttatctaatgcgcagttctaaatttatcttttacacaatcctaaattctgaactggcacagtcctgagtttattgtaattctgagctaatcttgcacaaattttaagttcatctcatgcgtaatctagagttgattttaattctgatcttttcttgcaaaatcctaagttttttgcaattgcgagcttatcttgcgcaactctgagtttatttcaagcaaacctgagttctttacaactctttgtctctaaattcaaaaggttttttgtaattatttgtctttcttcattcgacacagttctgaccgaatctcgtaattctgtttatttattgcaattttgaatcccacgattatacgtttatttaatgcaattatgatgtaacccagttcttacgattccaggtttgtatctcacagctcttaatttactgtaatttttttctctcaattttaatctgttcgcttctcacaatttagtttttcctcttgcaattctgagttcctttttgtcctgtttatttattcaaattgagtttatatattgctgttttaactgtatagccattttgaatttctctcgcaatttatttattgtctttttgagctgatctctcgcaagtttatttatatcttgcaattctgagttttttcccaattacaccacaatttaataaataccacaattttctttttttcttctcagaattgttcgcttgtatctcacaattcctgtatttctcagaactgaaaaataataattgtgatgggaatgtggtggaaataagcttccatacatatctgatgttacttcctgtgcaatcgacatgaataccgtggccaaaaaaacgatgcatttgcaaggttgtgataatgtttatgatataaatgcctgtacttgttatatgagaaggaactgttatcgctttttaatgatcatattgctgaaaactcccaacagaagcggaagagagaaggacgtcgatcagactttgtatttatgtatatttttttgactcacgagggactcgtctttgatgttaaacctctttagcgcgaacattaatgatggatttctttttaatctgcgttatcatggacaattctcacgtttttcaccatgaaatcgtggataaaacaaaacattttcaacatttaagaattgactgcatgtgctttcatttattattgtatttttagataccgtatgctcacaatctatcagaataaaccccatgagataccaaaataagctgatatatttggattatgcgtctattttgtcccgttttgcgattctacagctgtcacttacttaagctcatgtatccctgttatttagcgtgttcagaatgtgctttaggcagtctgtactgagcggcttttcatttccagctgtagtcttgtgaatgtgatgccatcagtcagatgactagctaacccaaaaggagacagtcggctccgttagcttagcatggggaggttttcaacgctgcactttttctctctgcgcttctataatcgcttctctcacacacactcacaaactcacacacacacagatttgcctttcagactttttgttttataataaagaacactgtacctgaaggccaca

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