LOCUS       XM_009293342            3286 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio Meis homeobox 2a (meis2a), transcript
            variant X3, mRNA.
ACCESSION   XM_009293342
VERSION     XM_009293342.4
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007128.7) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_009293342.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3286
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="17"
     gene            1..3286
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /note="Meis homeobox 2a; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 17
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 101
                     samples with support for all annotated introns"
                     /db_xref="GeneID:170454"
                     /db_xref="ZFIN:ZDB-GENE-020122-2"
     misc_feature    1
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     CDS             606..1832
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /codon_start=1
                     /product="homeobox protein Meis2a isoform X3"
                     /protein_id="XP_009291617.1"
                     /db_xref="GeneID:170454"
                     /db_xref="ZFIN:ZDB-GENE-020122-2"
                     /translation="

MAQRYDELAHYGGMDGVGMYGDPHAPRPLPQVHHLNHGPPLHASQHYGTHAPHPNVMPTSMGSAVNDVLKRDKDQIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFNEDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGKMPIDLVIDERDGSSKSDHEELSGSSTNLADHMGNGWIRSDRLQNPASWRDHDDATSTHSAGTPGPSSGGLASQSGDNSSEQDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGFLLDPSVSQGAAYSPEGQPMGSFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM"

     misc_feature    921..1175
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /note="N-terminal of Homeobox Meis and PKNOX1; Region:
                     Meis_PKNOX_N; pfam16493"
                     /db_xref="CDD:465140"
     misc_feature    order(1470..1472,1599..1601,1608..1613,1620..1622)
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /note="specific DNA base contacts [nucleotide binding];
                     other site"
                     /db_xref="CDD:238039"
     misc_feature    1509..1625
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /note="Homeobox KN domain; Region: Homeobox_KN; pfam05920"
                     /db_xref="CDD:428673"
     polyA_site      3286
                     /gene="meis2a"
                     /gene_synonym="fa26d08; meis2.2; wu:fa26d08"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

ataagcgagcgagcggccgacctgccaacactcactgacactcactcatctccgaccgcgcacgagaccgccgcatttctcttttcaaaaactcttctctttttccctcttttttcctcgtctaaatcctcctcgctacactccagcagtggtagtggtagtaataaaacaagaaagcggaccggaggcataaaggagacagggacttgtgggatgaaaacggggctctaaaaagattcatcctctcccgaacatcatcaccaaccatcattcattcattaccttgacaacctctggctttgattgacagctggagtggcaaaaagccatgagacacgacagtttagttacatgcaggttgttgatgggccggctgtaaccttcagtttggtgcttgactttttttttccctttcttttctggggggcaaagaggaaaagaagaataattgcaaaactcttcccgatgcccgcgctcgtccgtgttggagaataggagagaattcggctcgaaaaagggggcatctttgcggcgcatgagtttgtgagcggactgggaaattaaatctacgacacagatccagaggtttattggagcgcaggctgatggcgcaaaggtacgatgagctggctcactacggcggcatggacggggtcgggatgtacggggatccacacgcgcctcggccgctcccgcaggtccaccatctgaaccacggaccgccgctccacgccagccagcattacggcacacatgccccccatcccaatgtcatgcccaccagcatgggctcagctgtcaacgacgtgttaaagagggataaagatcaaatttacggccatcctctgtttcctctcctggctctggtcttcgagaagtgcgagctggccacatgcactccccgcgagcccggggtggccggcggagacgtctgctcctcggactccttcaacgaggacatcgctgtcttcgccaaacaggtccgcgctgaaaaacctttattttcttcgaatccagaattggataatttgatgatacaagccatacaagtattacggtttcatcttttggagttagaaaaggtgcacgaactctgcgacaatttctgccatcggtacattagttgtttgaaaggaaaaatgcccatagatttagtgattgatgaacgggatggcagctcaaaatcagaccacgaggaactctcgggatcttcgaccaacttagccgatcatatggggaacggatggatccgctcggaccgtctccagaatccggcgtcctggagagatcacgacgacgccacgtccacacactcggcaggcacaccgggaccctccagcggaggcctggcgtcgcagagcggagacaacagcagcgaacaagatggtttagacaacagcgtggcctcgcctggcacgggtgacgacgatgatccggacaaggataaaaagcggcagaaaaaacgcggcatcttccccaaggtcgccaccaacatcatgcgggcatggcttttccagcacctcacacacccgtatccctcagaagagcagaagaagcagctggctcaggacaccggcctcaccatcttacaagtaaacaactggttcattaatgccagaagaagaatagtgcagcccatgattgaccagtcgaatcgagcaggttttcttcttgatccttcagtgagccagggagcagcgtacagtccagaggggcagccaatgggcagcttcgtgctggacgggcagcaacacatgggcatccggccagcaggtcctatgagtggcatgggcatgaacatgggcatggacggccagtggcactacatgtaacggctgcacagaaaagaaaagggggaagtctgcgaggcgtgccgggggagtttcgtacctcagtttcgtggtcctgtgggcatgagcatggcatcaccgacccctccacccaaaagcccatcgtctcctgcgtttgtcatcccgtgcggccatgctaatgcacggagagccctcctccacctccagcagaacgaccacgacctttgacccccccctctctcctgaccacagcgctgctggaccggcgaccaacaccatcacggatgaactggacaatgaccccacgacagatttcacctttgtttttgttgttgttgttgttttttttgaaggaaaagagaacaacggtggagttccagacgagctgtgatcgtttttttaatcttgtgaattttgttactggaggaccaagagtcgacgctgaatcgctttgtaaagtctgttcaacatcagcagaggatgacgaactttaaagacgagaacagactccaagagttcaactactgtagtataaaagcctagaaactaaattaaatcgtgtacattttttatcactcacttcatgtctgatgagctagtcctagagtaaaaccctgttttttcacactgtgtgtgctgaagatccgaagcggaggagctccgatcattaacgcagcgttaacgccatcgaagctcgctctttttcgcgaaagcccgcctctttttgtttcgtcacgcattttttggtccatgaatgaatgttgccctgttggtgaagttcttcgttttgaattgcccaagcactggattgtgttgcttttatacatttttattttattattattattattattaatattattattattaattttgtatcttggactctcagagtaagagccttatgaaggacgtgtatcctggagaagaaaaaaaatacaaaacaacaccaacaacagtctcactcctggggatcaaatatactatatatatatatatgtgtgtgtgtgtgtgtgtgaatctgccatacggaccgacacgcgtggatcctctcagtcctttggcacatacacagcggaggagcggcgaaagactttaaaaggacggaaaaacaaacaacacttaaattatgaactcagagcttgagagaatattgtaagaaaacttcgtacagagttcagtctattacttgtttcatgttagatattctatgtgtttacctcaattgaagacgaatgttttttgctagtttcagatctgctgtggcattgatattgtatgtccatgaatcccccccccaccctcgattccttcctttctcagcacgtgctcctcactagaagatgaaatactgtctccttgagctttgtcagaaatacattcaatacttttatgtatgaggactgtggcgtaatgtttcaaaggtgttcagtcacaaatgctgtaataaatatttcatttttttgattttggta

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