LOCUS       XM_005172629            4573 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio si:ch73-111e15.1 (si:ch73-111e15.1),
            transcript variant X2, mRNA.
ACCESSION   XM_005172629
VERSION     XM_005172629.5
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NW_018394782.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_005172629.4.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4573
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="10"
                     /map="unlocalized"
     gene            1..4573
                     /gene="si:ch73-111e15.1"
                     /note="si:ch73-111e15.1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2 long
                     SRA reads, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 4 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:101885260"
                     /db_xref="ZFIN:ZDB-GENE-110411-28"
     CDS             2257..3072
                     /gene="si:ch73-111e15.1"
                     /codon_start=1
                     /product="CD209 antigen-like protein C"
                     /protein_id="XP_005172686.1"
                     /db_xref="GeneID:101885260"
                     /db_xref="ZFIN:ZDB-GENE-110411-28"
                     /translation="

MDDDIYKNVNGTESEGMNRERGVKMEDMYVNAGSVGNHDYRTNSNTQQPPQNTGSNPVKTRSSRAALVCLVLLCFLLLTAVIALSVYIYTNQPNYPEERHQLLTKITNLTENKDELLTNIENLLKDREQLIQQHQIIAGWTYFQSSFYYLSNESKSWTDSRGDCKGRKADLITINNRQEQDFVMTLTRNKEFWIGLTDSEKEGQWKWVDGSTLTTGFWASFRSITEPNGGTRENCVLTHLKRHPELIGWIDHNCDASYQWICEKSILPVTF"

     misc_feature    2671..3048
                     /gene="si:ch73-111e15.1"
                     /note="C-type lectin-like domain (CTLD) of the type found
                     in human dendritic cell (DC)-specific intercellular
                     adhesion molecule 3-grabbing non-integrin (DC-SIGN) and
                     the related receptor, DC-SIGN receptor (DC-SIGNR); Region:
                     CLECT_DC-SIGN_like; cd03590"
                     /db_xref="CDD:153060"
     misc_feature    order(2848..2850,2860..2862,2953..2958)
                     /gene="si:ch73-111e15.1"
                     /note="calcium binding site 1 [ion binding]; other site"
                     /db_xref="CDD:153060"
     misc_feature    order(2860..2862,2956..2958)
                     /gene="si:ch73-111e15.1"
                     /note="calcium binding site 3 [ion binding]; other site"
                     /db_xref="CDD:153060"
     misc_feature    order(2932..2934,2938..2940,2953..2955,2983..2988,
                     3004..3015)
                     /gene="si:ch73-111e15.1"
                     /note="carbohydrate binding site; other site"
                     /db_xref="CDD:153060"
ORIGIN      

atctgtggcatatctttgacatatctgtggtggctataatttgcttggcactcaatgagtaatgttgccctcgacagaaccaacatctatatgttcataaacacctattaaaacttggcagagtgttttttttttctccaaaggtttccatggccatcaacctgtttccaagaaaaaaagacaattagaatttgcttatagctttatgaagacaaatttatattttagtacttttttataattttttgtttccataatttttttcgtccttatggtctactacggaagtgaagtttatttgcaaactaatttcgagaggatcacgtgcttatgattgctagtggctggatccgcattatccaattcacaatgcaccaatcagacgactcttaaactactacaaataccctgggttacattccactgctatcttcgttttgaagaatctccccttccacccctactcctcctccttcctagatgggtgacgcggtggtccagtgcttagcactgttgcctcacagcaagaacgtctctgcttccaggcgttaccaaaccagcagacgtttctgtgtggagtttgcactttctccccgtgttcacgtgagtttcccccgggttccctggtttcctcccaccgaccaaaaacatgcaacttaagttaatcgactaatcgaaatcagcatcatagacatgcttctagtatgtagttgtctaccaagagctatcacttactgttcattggttactacagcaggggagttctcgagatctacctgagctcaaactcccctcccgcctttcaacgggagtgagccccgggctcgaggatcttatgagctcagggctctctcccgggacagcatgccaaacaagctttataatcaatcatcagttaagtgtgaactcttgaaaaccagaaaggattatttttgtgtttcttggcaaagatgttttgcattccctcgcaaaactgttgttcgctctttgtgtgataaactcatttcagatcagcttctgtacatgccatttaaagtgacacctctgttatcaaacaagtgtagagcagcagttgaatctctcattttgttttgtttgataacagaggtgttacttcaagactgcacggatctataatgaaagcatttgattactttaataactgtttgtgaatatttaagggaaaatttgtgttaaatataaaacacacaggacagacatgtttacatactattaaatgaatttgtctgtttaaacacacacccaattcccaaagtgtcctgcactttagctcatctttgtgtgtacagaagctgatctgggatctgtttattatctacgcccagctttaatggaaagaaagtaaatgctgacattttttatatttatttcaatgttatttcaagaataaaaatatgggagaaataaggtaaatacttattgataggatgatagcggaataaaatggtaaaatacgggtgaatcccggcaaaaacgagagggttgacatgtatgaagtgaacagaaagtgtttgtcaaacaacagttttgcaagggaacgcaaaacattttgcgagggaacgcaaaaaccaaaaaaaaaaaaaataaatttctatccctcagtttttttcttccacctatttttcccccacaatcatgtcccttccaggtctccataggcacccccaatcttgatcaacagagaaatttaaaaacagttttggattaaatcaataatttgtttgaaatatcgatcataaataagaatgcacactttattttcagattaattttggttttaattttagtaattgcaagatctggttataatgccttgatgttaagtggtagtttgcattatttgggaatttgagccttgttcagttcccttttggtattctcaaaaagtcctcttaaaaaatcacaaaacccgacataattgtgcaatagaaaaacagatctcacttccttttataattcacacacaaaaatatagacgtaaagtgaaacatagttttaattatacctttaactatttgaatttgctaaaaaagtattaagctgaggaaatattttaatgtaaattcatgactttatagatgcttctaatcttacaggatgtgtttgatgtcaaatctgatgttgtatactaaccacgtgtttaacaaaccgtgttaacaagaagaaaagtgctgactataacacatctaaacaggaacaacaatcataacagtttttctacactatagagcagacatggatgatgatatttataagaatgtgaacgggacggagtctgagggaatgaacagagagcgaggggtgaagatggaggatatgtatgtgaatgcaggctctgtgggaaaccatgactatcggactaattcaaacacacaacaaccacctcaaaatacaggaagcaatccagtgaagacgagaagctccagagcagccttagtgtgtttggtgttgctatgttttcttctgctgactgcagtcatagcgctgagcgtgtacatctatacaaaccagccaaactaccctgaagagagacaccagctactaactaaaatcaccaacctcacagaaaacaaagatgagttgttgacaaatattgaaaaccttctgaaagacagagagcaacttatacagcaacatcagattattgctgggtggacttactttcaatccagtttttactacttgtccaatgagtcgaagagctggactgacagcagaggagactgtaaaggcagaaaagcagatctgatcaccataaacaatcgacaggaacaagattttgtaatgaccctcactcgtaataaggaattctggattggtctgactgacagtgaaaaagagggccaatggaaatgggttgatggcagtacactgaccactgggttctgggcttcctttcgatcaataactgagcccaatggagggacaagagagaactgtgttttgactcatttaaaaagacaccctgagttaataggatggattgatcataattgtgatgcttcttatcaatggatctgtgagaagagtattttaccagttactttttaagaagcaaaaaagttttgttataatgttaagcttaaaattacaattaaaaaatgtaaatgtatctggtcaagtctaagtatacataagcaggggtttttagtctttagatgactttgaccgctaaaaaggaacataaaggaagcctactgtatattcagtgctcagcataactgagtacaccccattttgaaaatcaatattttatccatttctcagtgaataatgtattttggtgcattttaacaaaacagatctattaaaaggatatatttattaaaagagtattttggtcaacaaacatatttagaaatttaaagataatacaattaaatttaagtaaaatatagaaaaaaatacaacctacaacctttttttattctcttgatttttactctttttttattatttgtatgtaatatttttctataacatatacattaggctttgctattttttggaccgttatcgtaagtaattttgttagataagctccagatttggcttcagtactgactaatctaatgtatatatgcacaaatataatattgcacagcttcctattaaaactatacatttaaaagatagatttgtgaggggtgtacttatatatgttgagcacagaagcactttatacacctctttggtcagttatgatgtatcaaggtctgatattttctaataatgaccaccattaatagcaggtctgtataatagattgcaaatctaattttacatctcaaacattgtacacatgctcttcgcagcttttataaatcagctgctgcaatcttgcatctaatgtattgactaaactgaaaatgcagtctgtaatgcttttgtggtgctcatctttttggcaatatttttgttttgtacactgaaatggattacaaaataaaaaaatagtttaaatctcatataagaaattatttatttggtgagaaaccacattaaaatggactgtatattagcacttcagtatgcctaaatatgtttgaagtggcttagtaataatggctcactggattttatttttttattttgcaagtaaatcaagaggttattttgatttaaagaacaacctagcttaataagaaaactagattaaatgtattatttgcttctttaaaaaaagaattcactagagaaatgtttaagaaagcagatgtatataaaggtttgagttagtgtagggctgttaggtctttcttttaactaatttcgtggctctgttgaacagataaattgctgtgttttcaaccttatgtgcacttagtcctgttttatgctgttagatacaaccacaagcttctgtggaacacaaataaggttagttataagatttcaaaacttaataaccagagatatcaagctcaaaaaagaaggcataagcattaaaagtgcagtatgcaggtaaaagggcttgttctttttttctctaatatttgcagttatttgcatcattttctatgtaattatgagatttaaatactaaatttgc

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