2025-02-20 23:05:15, GGRNA.v2 : RefSeq release 228 (Jan, 2025)
LOCUS XM_005164667 1781 bp mRNA linear VRT 08-SEP-2024 DEFINITION PREDICTED: Danio rerio wingless-type MMTV integration site family, member 16 (wnt16), transcript variant X1, mRNA. ACCESSION XM_005164667 VERSION XM_005164667.5 DBLINK BioProject: PRJNA13922 KEYWORDS RefSeq. SOURCE Danio rerio (zebrafish) ORGANISM Danio rerio Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_007115.7) annotated using gene prediction method: Gnomon, supported by mRNA evidence. Also see: Documentation of NCBI's Annotation Process On Sep 8, 2024 this sequence version replaced XM_005164667.4. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_000002035.6-RS_2024_08 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Best-placed RefSeq; Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 08/15/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1781 /organism="Danio rerio" /mol_type="mRNA" /strain="Tuebingen" /db_xref="taxon:7955" /chromosome="4" gene 1..1781 /gene="wnt16" /gene_synonym="zgc:77293" /note="wingless-type MMTV integration site family, member 16; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns" /db_xref="GeneID:791563" /db_xref="ZFIN:ZDB-GENE-040426-2330" misc_feature 1 /gene="wnt16" /gene_synonym="zgc:77293" /experiment="COORDINATES: cap analysis [ECO:0007248]" /note="transcription start site" CDS 587..1306 /gene="wnt16" /gene_synonym="zgc:77293" /codon_start=1 /product="protein Wnt-16 isoform X1" /protein_id="XP_005164724.1" /db_xref="GeneID:791563" /db_xref="ZFIN:ZDB-GENE-040426-2330" /translation="
MAAGLVHAVTRSCSAGNMTECSCDTSLLGSGSPTEGWHWGGCSDDIAFGTSFSRRFIDSAAKNTSTRGEEALLIMKQHNSEAGRQAVAKTMLTDCRCHGVSGSCAVKTCWRTMAAFERVGAYLKDRYETSVHVVDRSKRKVRRKDKEQRHVPITKDELIFFNKSPNYCLEDRRLGVTGTRGRKCNRTSAGPDGCNLLCCGRGYNTHVVRHVERCECKFVWCCYVRCRRCETMNDMHTCK"
misc_feature <587..1303 /gene="wnt16" /gene_synonym="zgc:77293" /note="Wnt domain found in the WNT signaling gene family, also called Wingless-type mouse mammary tumor virus (MMTV) integration site family; Region: Wnt; cl38924" /db_xref="CDD:393294" misc_feature order(872..877,884..892,914..916,1238..1240,1244..1246, 1250..1252,1256..1258) /gene="wnt16" /gene_synonym="zgc:77293" /note="Frizzled receptor binding site [polypeptide binding]; other site" /db_xref="CDD:381706" polyA_site 1781 /gene="wnt16" /gene_synonym="zgc:77293" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN
gctcatggcgaaggtgacttgctggtggttggacgttacctgcgtcttgatggattcttaaaacggagacttaaaagcgtcgtttgtggattacaggtgctacatattagatgcagtggaccggcatgaatcgtctttgtcaaaacgttcagttcgggacttgttaaatgaagtggacatggataataccggttgtgggatacatgcagttcatcatttattccttatatggctctccgtttaccctttgtgctctcagggaagttggatgccgacaggagaggagaaccgcttctgatctttgtgtcacactgctccgcatcacaggtggttgggcatcacatctgtaggagtgcccgagaagttgggttgcgcgcatttgcccctgtcgcacaagcagaaggagctgtgcgcgcgcaaaccgcatcttctaccgagcgttaaagagggcgcgcgcctgggcatcaccgagtgccaaactcagttcagacacgaacgctggaactgctcgacccgacgggacccgaacgtgttcggctacgagctcacgagcgggactaaagagacagcgttcatccatgcagtaatggctgccggcctggttcatgcagtcacccgctcttgcagtgcaggaaatatgacagagtgttcatgtgacacaagcctgttgggcagcgggtcgcccaccgagggctggcattggggcggctgctctgatgacatcgccttcgggacttcattcagccgccgctttattgacagtgcagcgaaaaacacctcgacccgtggtgaggaggccctgctcattatgaagcagcataacagtgaggctgggagacaggcggtggccaaaacaatgttgacagactgccgctgtcatggcgtatcgggttcatgtgcggtaaagacgtgttggcgcacaatggctgcatttgagcgtgtgggcgcctacctgaaggatcgctatgaaaccagcgttcatgttgtggaccgttccaaacgtaaggtgcgacgcaaggataaagagcaacgccatgtgcctatcaccaaagatgagttaatcttcttcaacaaatcgcccaattattgcttggaggaccggcggctgggcgtgacggggaccaggggccgcaagtgtaacagaacttcggccgggcccgacggctgcaacctgctgtgctgcggacggggatacaacacacatgtggtgcgacatgtagagcgctgcgagtgtaagttcgtctggtgctgttatgttcgctgcagacgctgcgagacaatgaatgacatgcacacctgcaagtaaagcagcgacttcgggcgaggttgaaggatctcgtgagaggaaatggaccttctttgtgctgtcagcctatacaaacaagcatgttgacgaaatatccaaccggcaatacgtagctgaatccataaagaaatggtataatccttttttaagtacacatgcataactcttcccatgggtttccattgggagtcaagccattttgtatataatgactgtggaataaactggagcataaagggaattcaaatactgggaattgcagaggaaaagtgtaaatactttagataactctgtttggattttttactgaaggcatgttcggataaagagttagctgaccttaaaatgaaaagtttgtcaaaattagtctttccaactcacctcttcactttttcccaacccaaatcttcattaaaaaattattaaaagtaggatcactcaaacatttcgtaaataaaaactattattcaattca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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