LOCUS       XM_001333689            1899 bp    mRNA    linear   VRT 08-SEP-2024
DEFINITION  PREDICTED: Danio rerio BCL2 interacting protein 1b (bnip1b), mRNA.
ACCESSION   XM_001333689
VERSION     XM_001333689.9
DBLINK      BioProject: PRJNA13922
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_007132.7) annotated using gene prediction method: Gnomon,
            supported by mRNA evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Sep 8, 2024 this sequence version replaced XM_001333689.8.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_000002035.6-RS_2024_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/15/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1899
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="21"
     gene            1..1899
                     /gene="bnip1b"
                     /note="BCL2 interacting protein 1b; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 226 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 133 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:795732"
                     /db_xref="ZFIN:ZDB-GENE-120203-6"
     CDS             1..699
                     /gene="bnip1b"
                     /codon_start=1
                     /product="vesicle transport protein SEC20"
                     /protein_id="XP_001333725.2"
                     /db_xref="GeneID:795732"
                     /db_xref="ZFIN:ZDB-GENE-120203-6"
                     /translation="

MTTNMASSSDVHVRICGQEIIKYDLEIKAIIQDIRECCGPQAVLMELNSTVKEKFSLLRQRIQDMEQMAKEQDRETDKQALLSETEGHRKQMLSNQMAWRKANLACKLAIDNLEKDELLQGGDAVRQRKATKESLVQTSSDITESLMSISRMMSQQVQQSDETIGTLVTSSRTVQETNEEFKAMTGTIHLGRKLILKYNRRELTDKLLIFLAIALFLATVLYILKKRLFPFI"

     misc_feature    406..684
                     /gene="bnip1b"
                     /note="SNARE motif of SEC20; Region: SNARE_SEC20; cd15865"
                     /db_xref="CDD:277218"
     misc_feature    order(421..429,433..450,454..459,466..471,475..492,
                     496..501,505..513,517..534,538..543,547..555,559..564,
                     568..576,580..585,589..591)
                     /gene="bnip1b"
                     /note="heterotetramer interface [polypeptide binding];
                     other site"
                     /db_xref="CDD:277218"
     misc_feature    508..510
                     /gene="bnip1b"
                     /note="zero layer; other site"
                     /db_xref="CDD:277218"
     misc_feature    1
                     /gene="bnip1b"
                     /experiment="COORDINATES: cap analysis [ECO:0007248]"
                     /note="transcription start site"
     polyA_site      1899
                     /gene="bnip1b"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      

atgacaacaaacatggcgtcttcctctgatgtacatgtccgaatatgtggccaagagattatcaaatacgacctggaaatcaaagctataattcaggatataagagagtgctgtgggccacaggcggtgctgatggagctaaattcaacagtcaaggagaagttcagtctcttaagacagagaattcaggacatggagcagatggcgaaagaacaagatagagagactgataaacaagctctgttgagcgaaaccgaaggccatcggaagcagatgttaagtaaccagatggcatggaggaaagcaaacctggcctgcaaactggccattgataacctggagaaggacgaactgcttcaaggaggagatgcggtgaggcagaggaaggccactaaagagagtttggtgcagacatccagtgacatcactgagagcctgatgagcattagccgaatgatgtcgcagcaggtgcagcagagcgatgagaccatcggaactctggttacatcctcaaggactgtacaagagacaaatgaagagtttaaggccatgacggggaccattcacttgggccggaaacttatcctgaaatataaccgccgcgagctgacggacaaactgctgatctttttagccatcgcgctgtttttggcgacggtgctctacatcctgaaaaaaagactcttccctttcatttaaagcaactttacactgctggactaataccaatctgtgattgttacctctcaaattagcctcacgattcttaaagggatagttcacccaaaatgtacaacttacgtactatttactcacccttaagttaatccagtaacttggaaaatgttttcaagaaagctaaaaacctgtaaccattgacttccatagtaggaaaaacaaattttatggaagtcagtggttacaggtttccaacatttttaaaaatattttccattgtgttcaacagaagaaagaaactacatttgaaacaagtaaagagttacataatgtcagaattgacatttttgggtgaactatctcatgaatggaacgttccacttttttacaactcccatagaattaaacagttgagttcagtcgatctttgtgtctggctttaacacttttagcttagcttagcataaatcattgattcggattagaccattttcccattttttaatccattcagccaatctctgagtctggggtaaacatttttagcttagctaagcttagcttagcataaatcattgaaccggattagaccattttaccatttttgaatccattcagccaatctctgaatctggcgggaacacctttagcttagcttagcatagcataaattattgaaccggattagaccatttttaaatccattcagccagtctcttgagtctagcaggaacacttttagcttagcttagcataaatcattgaatcggattagaccattttcccatttttgaatccattcagccaatctctgagtctagcaggaatagttttagcttagcttagcacaaattgttgaaccgaattagaccattttcccatttttgaattcattaagccagtctctgaatctggcgggaacacctttagcttagctttgcatagcataaattattgaaccggattagaccatttttgaatccattcagccagtctcttgagtctagcaggaacgcttagcttagtttagcataaattattgaatccggttagaccattttcccattttatgaatccattcagccaatcactgactctaggaagggttgctgctagagcggatacgtttgcggccggaagttaacgcaaattatttttgttatttattaaatttctcatttgttgtattttattaacgtttaccctcaccccaaccctaaa

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