LOCUS       NM_199667               3345 bp    mRNA    linear   VRT 04-JAN-2026
DEFINITION  Danio rerio C1GALT1-specific chaperone 1 (c1galt1c1), mRNA.
ACCESSION   NM_199667 XM_005173244
VERSION     NM_199667.5
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 3345)
  AUTHORS   Lescat,L., Veron,V., Mourot,B., Peron,S., Chenais,N., Dias,K.,
            Riera-Heredia,N., Beaumatin,F., Pinel,K., Priault,M., Panserat,S.,
            Salin,B., Guiguen,Y., Bobe,J., Herpin,A. and Seiliez,I.
  TITLE     Chaperone-Mediated Autophagy in the Light of Evolution: Insight
            from Fish
  JOURNAL   Mol Biol Evol 37 (10), 2887-2899 (2020)
   PUBMED   32437540
REFERENCE   2  (bases 1 to 3345)
  AUTHORS   Collery,R.F. and Link,B.A.
  TITLE     Precise Short Sequence Insertion in Zebrafish Using a CRISPR/Cas9
            Approach to Generate a Constitutively Soluble Lrp2 Protein
  JOURNAL   Front Cell Dev Biol 7, 167 (2019)
   PUBMED   31457013
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3345)
  AUTHORS   Bayes,A., Collins,M.O., Reig-Viader,R., Gou,G., Goulding,D.,
            Izquierdo,A., Choudhary,J.S., Emes,R.D. and Grant,S.G.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   4  (bases 1 to 3345)
  AUTHORS   Elkon,R., Milon,B., Morrison,L., Shah,M., Vijayakumar,S.,
            Racherla,M., Leitch,C.C., Silipino,L., Hadi,S., Weiss-Gayet,M.,
            Barras,E., Schmid,C.D., Ait-Lounis,A., Barnes,A., Song,Y.,
            Eisenman,D.J., Eliyahu,E., Frolenkov,G.I., Strome,S.E., Durand,B.,
            Zaghloul,N.A., Jones,S.M., Reith,W. and Hertzano,R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 3345)
  AUTHORS   Varshney,G.K., Lu,J., Gildea,D.E., Huang,H., Pei,W., Yang,Z.,
            Huang,S.C., Schoenfeld,D., Pho,N.H., Casero,D., Hirase,T.,
            Mosbrook-Davis,D., Zhang,S., Jao,L.E., Zhang,B., Woods,I.G.,
            Zimmerman,S., Schier,A.F., Wolfsberg,T.G., Pellegrini,M.,
            Burgess,S.M. and Lin,S.
  TITLE     A large-scale zebrafish gene knockout resource for the genome-wide
            study of gene function
  JOURNAL   Genome Res 23 (4), 727-735 (2013)
   PUBMED   23382537
REFERENCE   6  (bases 1 to 3345)
  AUTHORS   Wang,D., Jao,L.E., Zheng,N., Dolan,K., Ivey,J., Zonies,S., Wu,X.,
            Wu,K., Yang,H., Meng,Q., Zhu,Z., Zhang,B., Lin,S. and Burgess,S.M.
  TITLE     Efficient genome-wide mutagenesis of zebrafish genes by retroviral
            insertions
  JOURNAL   Proc Natl Acad Sci U S A 104 (30), 12428-12433 (2007)
   PUBMED   17640903
REFERENCE   7  (bases 1 to 3345)
  AUTHORS   Woods,I.G., Wilson,C., Friedlander,B., Chang,P., Reyes,D.K.,
            Nix,R., Kelly,P.D., Chu,F., Postlethwait,J.H. and Talbot,W.S.
  TITLE     The zebrafish gene map defines ancestral vertebrate chromosomes
  JOURNAL   Genome Res 15 (9), 1307-1314 (2005)
   PUBMED   16109975
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JBMGRA010000014.1.
            
            On Jul 16, 2025 this sequence version replaced NM_199667.4.
            
            Sequence Note:.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26395062.1372558.1,
                                           SRR26395013.189348.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA4476770 [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-66                JBMGRA010000014.1  38099242-38099307   c
            67-3345             JBMGRA010000014.1  38093786-38097064   c
FEATURES             Location/Qualifiers
     source          1..3345
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="14"
                     /map="14"
     gene            1..3345
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /note="C1GALT1-specific chaperone 1"
                     /db_xref="GeneID:324052"
                     /db_xref="ZFIN:ZDB-GENE-030131-2772"
     exon            1..66
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /inference="alignment:Splign:2.1.0"
     exon            67..3345
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /inference="alignment:Splign:2.1.0"
     CDS             84..1037
                     /gene="c1galt1c1"
                     /gene_synonym="fc59b02; wu:fc17f08; wu:fc59b02; zgc:66375"
                     /codon_start=1
                     /product="C1GALT1-specific chaperone 1"
                     /protein_id="NP_955961.2"
                     /db_xref="GeneID:324052"
                     /db_xref="ZFIN:ZDB-GENE-030131-2772"
                     /translation="

MMSEGSSFMKGMIFGGIFCLIMSFFETFNPGTHSEGHNHLHHHLKPVSKDELQKLSESQMSEFAMQVRVYCLIMVTPKLLVHWATANDTWSKHCDKSVFYTSEASKALDAVDLQEQDEWTRLRKAIQHAYENAGDLHWFFIARPTTFAIIENLKYLVLDKDPSQPFYIGHTEKSGELDYVEYDSGIVLSYEAMRRLMEVFKDEDKCPERGRALWKMSEEKQLATCLKYSGVFAENGEDAQGKGLFNKKSVSSLISDSISQNPGDVVEACCSDMAITFAGMSPSQIQVLMYGVYRLRPYGHDFHDSLTFLPPKDSDND"

ORIGIN      

gtgtatacggaactaagtgcgacggtgcagcgtctaaatgcgatcactattcttcgtcgttaaaaggacgactccattctagcatgatgtctgagggcagttcatttatgaaaggcatgatcttcggaggaatattctgcttgatcatgtctttctttgagacctttaatccaggaacccactcagaaggtcacaatcacctccaccatcatttgaaacctgtcagcaaagatgagctacagaagttatcagagtctcagatgtctgagttcgctatgcaggttcgagtctactgcctcatcatggttactccaaagcttttagttcactgggcgacagctaacgacacctggagcaaacactgcgacaaatctgtgttttacacctctgaggcgtctaaagctctagatgcggttgacctacaggagcaggacgagtggacaaggcttcgcaaagccatccaacacgcttatgagaacgccggagacctgcactggtttttcatagcgcgacccaccacctttgctattatagagaatctcaaatacctggtgttggataaagatccaagccagccgttttacattggccacacggaaaagtctggagagctggattatgtggagtacgacagtgggattgtgttgagttatgaagcgatgaggaggctgatggaggtgtttaaagatgaagataaatgtccagagcgaggacgagctctatggaagatgtctgaagaaaagcaactggccacttgtctgaagtacagcggagtgtttgctgaaaacggagaggacgcccaaggcaaagggctttttaacaagaagagtgtgagctctttgatttcggatagcatcagccaaaatccgggcgatgtggtggaggcctgttgttctgacatggctatcacatttgctgggatgtcgccgagtcagatacaggtcttgatgtacggcgtctacagacttcgaccgtacggacacgactttcacgattccttgacatttctgcctccgaaagactctgataatgattgagggagtttgtggattctggaactcttactgtgactctcagcagtgaaatgttgatcataattgggtgcgggatgaattatttgtgaagttggtgaaggtaaaaatgaaaaggatttgcattatgatttaatactaataagtcaagtgctggatcatgtgtgtgcacttgtcagtattttgaataaaaatgctagattcacatttatggatcagatctgtgtaaatctgcggcaagatttatagttcctgctgttttcagaagtcggtaaagtagctgctttcatgccaagtcaaaactgtcatttctagatgatgttcacgtgagataacactgttcacatttttagacgtgtgattattttacactttcacaagttacagtaattagaaccggggatgaatgcatttacttctaccactgtaaaaccattaattaaatggaaaagagaatgtatattttatatcaggggtgtcaaaatcagagtttagttcgagccctgctcaaacacatactggtggttgtaaaataatcctgaaagacttgattagctggatttggtgcgtttaaataaggttgaaactaaactctgcaaggatttggccctccagcaactgagagggacacatttttactgttcatttacatgacaatgttttttggggggcatgaaaaagctaattattttaattggatttaaagtgcaacttttggcaaaaacaattgtgaaaacagtggcatcatggactttatggatattataattccggtttcaagccgctactcatttgaattgagaaaatatttgtttatgacattttttagtcaaatcacacattaaagtgaattttatataaaagcaaagtggacaacagtctctgggcctgctgcatcacaaataccaaaattttaacaatttctaaaaaaaaaaaaaaaaaattttttggccatctgatattaggcaaggacataaatgtttattattaccatttgagcctctccatacagtttgatatagcgcttggacccggaagccgcttggtgtgacgtcacacttaacaagcgtataggcatgtttcagtactttacaaccaaaactattggggacagggttgccacatccaagaaaagttttcagcctgatgacaactcagaacctaccacatcgccatctactggcatggcatgtgggctggaatgatttcattggtatctgacaaacaaaaggaaaacattccttttttaactacattattaaactgtctatttaataattttgtccaggtgttttcaatattccttaaaggtacagtatgttacttctggttcacagttactaggtaaattgacagcagagaattctggatgaaataaatatatgctttggaaggtgaaattatgggtgtcactgtggcgcagtgggtagcacaatcgcctcacagcaaaaaggtcgctggttcgagccttggctaggccagttggcatttctgtatggagtttgcatgttctcgccccgtgttggcgtgggtttcatccggatgctctggtttccccacaagtccagacatgcggtacaggtgaattgggtaagctaaatcgtccgtagtgtatgtgtgtgaatgagtttgtgtggatgtttcccagtgatgggttgcagctggaagggcatccgttgtgtaaaaaacatatgctggataagttgagggtttattctgctgtggcgaccccaggttaataaagggactatgccaaaaaaagaaaatgaatgaatgtaggtaaaatcatgagttgctcattaaatatggttcattttaagcttaaaagactacaaaccttttttcttttttacgtgggacaggtagggatgaaaatgaagaatgtttttatgatctttaaaattgttttcttggttgtaaaatgtcaaataagaactggaatttattttctctgtctgtatcatcattaacagtatctgaagaaaatgtggtttaaacgtgtgattcaaatatgcttgaaataacttttgaatgaataaactatttatttacatatcaaaatagtgtttctataatttagatgtattatacactggtttgtgatttttacattctatttagtaatcatcaggacactcgttctccttaagtctttccataatactcattcatattaatttttttttttttgcagtgaataaagaatacatccataaaacagtacatcctcttcctttttatagatatttgacgtcacagctgagctatatcatgtcatttaagttttgtagtcattaaataaacagcttttgtc

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