LOCUS       NM_001080083            1723 bp    mRNA    linear   VRT 16-SEP-2024
DEFINITION  Danio rerio zgc:158423 (zgc:158423), mRNA.
ACCESSION   NM_001080083 XM_001335447
VERSION     NM_001080083.1
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Bayes A, Collins MO, Reig-Viader R, Gou G, Goulding D, Izquierdo A,
            Choudhary JS, Emes RD and Grant SG.
  TITLE     Evolution of complexity in the zebrafish synapse proteome
  JOURNAL   Nat Commun 8, 14613 (2017)
   PUBMED   28252024
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Elkon R, Milon B, Morrison L, Shah M, Vijayakumar S, Racherla M,
            Leitch CC, Silipino L, Hadi S, Weiss-Gayet M, Barras E, Schmid CD,
            Ait-Lounis A, Barnes A, Song Y, Eisenman DJ, Eliyahu E, Frolenkov
            GI, Strome SE, Durand B, Zaghloul NA, Jones SM, Reith W and
            Hertzano R.
  TITLE     RFX transcription factors are essential for hearing in mice
  JOURNAL   Nat Commun 6, 8549 (2015)
   PUBMED   26469318
  REMARK    Publication Status: Online-Only
COMMENT     PREDICTED REFSEQ: This record has not been reviewed and the
            function is unknown. The reference sequence was derived from
            BC128865.1.
            
            On Mar 11, 2007 this sequence version replaced XM_001335447.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC128865.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA3505370, SAMEA3505371
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /db_xref="taxon:7955"
                     /chromosome="7"
                     /map="7"
     gene            1..1723
                     /gene="zgc:158423"
                     /note="zgc:158423"
                     /db_xref="GeneID:790938"
                     /db_xref="ZFIN:ZDB-GENE-061215-58"
     exon            1..26
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            27..210
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     misc_feature    47..49
                     /gene="zgc:158423"
                     /note="upstream in-frame stop codon"
     CDS             59..1501
                     /gene="zgc:158423"
                     /codon_start=1
                     /product="uncharacterized protein LOC790938"
                     /protein_id="NP_001073552.1"
                     /db_xref="GeneID:790938"
                     /db_xref="ZFIN:ZDB-GENE-061215-58"
                     /translation="

MKDIELKEVDQTKQLMTRENGCVKVTVPENTAVKYTGLSKDELVKVAGTPGWIRIRWALLALFFLGWVGMLAGAIVIIVQAPRCKPIPEMHWWNEGPLYQISDVNAFTESGLKGLEGKLDYLSQMNVAGVVLGPIHSLKIDQLDTLNLISVQSEVGTENELESLLGLAHKKGIFIVLNLTPNFNKTSAWFNNFNAVAEKIKDACTYWLDKGLDGIFLSDLNEIPTDAWPSIKEIFNRSDATKEVALMGSVNSMSVNDISVLLNRSGVDLLLTGQPDLSDSGEKQAQIIKEFNSSIQQTSLGWRSRQDPGTLAAEFPIRLYQILLFTLPGTPVFSAGEELGLKAEEQLQALWDLENPVEEKNAKAKALQEERLAVRNFFKTLSDLRGKERSLQHGEYVGLSNSKSSLAFLRVWDQSKRFITALNWGDKPVTMKLTYRDLPAEAQVLLSTDTSSLALESMVSLEKLQLDPKQAVLLTYSYAG"

     misc_feature    143..355
                     /gene="zgc:158423"
                     /note="Solute carrier family 3 member 2 N-terminus;
                     Region: SLC3A2_N; pfam16028"
                     /db_xref="CDD:464983"
     misc_feature    299..1231
                     /gene="zgc:158423"
                     /note="Alpha amylase catalytic domain family; Region:
                     AmyAc_family; cl38930"
                     /db_xref="CDD:476817"
     misc_feature    order(605..607,704..706,710..712,803..805,965..970)
                     /gene="zgc:158423"
                     /note="active site"
                     /db_xref="CDD:200451"
     misc_feature    order(710..712,803..805,968..970)
                     /gene="zgc:158423"
                     /note="catalytic site [active]"
                     /db_xref="CDD:200451"
     exon            211..398
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            399..572
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            573..661
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            662..789
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            790..1090
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            1091..1153
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
     exon            1154..1705
                     /gene="zgc:158423"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      

cagaggagaactcagctaaactaaagtgtttttagacaaccttatataaacaggagaaatgaaggacatagaactgaaggaagtggatcagacaaaacaattaatgacccgagaaaatggctgcgtgaaggtcaccgttccggagaacactgcagtgaagtacacaggcctctccaaagacgagcttgtgaaagtcgctggtactccagggtggattcggattcgttgggctttgttggctcttttttttcttggttgggttggcatgttagctggagcaatagtaatcatagtacaagctccacgctgtaaacccattcctgaaatgcactggtggaatgaaggtcctctgtaccagatatctgatgttaatgccttcactgagagtggactgaaaggactggagggaaagctggattatctgagccagatgaatgtggcgggtgtagttctgggtccgatacactccttgaaaattgaccagctagatacactaaacctgatttcagttcagtctgaagttggcactgagaatgagctggaatctctgctgggcctggctcataaaaaaggtatcttcatagtgctgaatttaacacccaacttcaacaaaacttcagcctggttcaacaatttcaacgctgttgctgagaaaatcaaagatgcgtgtacatattggttggataaaggactcgatggcattttcttgtctgacctgaatgaaatcccaacagacgcctggccatctataaaggaaatattcaaccgaagcgacgcgactaaagaagtagctctgatgggttcagtcaacagtatgtccgtcaatgatatttctgtcctgctcaaccgctctggtgttgacctgctcctgactggacagcctgatctgagtgactccggagagaaacaggcccaaataatcaaggagttcaactccagtatccagcagacaagtctaggatggcgttcgagacaggatccggggactctagctgcagaatttccaatcaggctctatcaaattctgctgttcactctgccaggaactcccgtgttcagcgctggagaagagctggggctgaaggctgaggaacaacttcaagcactgtgggacttggaaaatccagttgaagaaaaaaatgctaaagcaaaggctctgcaggaggagagacttgcagtgcgaaacttcttcaaaaccctcagtgacctaagaggaaaagagcgctcgcttcagcacggagaatatgttggcctcagtaattccaagtcatcattagcatttctccgggtctgggatcaaagcaaacgcttcattactgccctaaactggggggataagcctgtgaccatgaagctgacttacagagacctgccggctgaagctcaggttctgctctccacagacaccagcagtttagccctggagagcatggtgtccttagagaagttacagctcgaccccaaacaggctgttctcttgacttattcttatgctggttagacacacagtgaacacatgctcatatttactgtcttaaagacagtcttaaagaaaaaaatgaccattttaatgccattttggttcttgaagtttaatggttaatgtcaaaatgtgtttaaatcaaattcaaagtgatttgaaatgatttttcattgtcaatcatttacataactttaaattttgaattaaaaaaaaataatttttaaaaaaaaaaaaaaaaaa

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