LOCUS       NM_001020581            2006 bp    mRNA    linear   VRT 08-AUG-2023
DEFINITION  Danio rerio RAB3A interacting protein (rabin3) (rab3ip), mRNA.
ACCESSION   NM_001020581
VERSION     NM_001020581.3
KEYWORDS    RefSeq.
SOURCE      Danio rerio (zebrafish)
  ORGANISM  Danio rerio
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Actinopterygii; Neopterygii; Teleostei; Ostariophysi;
            Cypriniformes; Danionidae; Danioninae; Danio.
REFERENCE   1  (bases 1 to 2006)
  AUTHORS   Jin X, Liu W, Miao J, Tai Z, Li L, Guan P and Liu JX.
  TITLE     Copper ions impair zebrafish skeletal myofibrillogenesis via
            epigenetic regulation
  JOURNAL   FASEB J 35 (7), e21686 (2021)
   PUBMED   34101239
REFERENCE   2  (bases 1 to 2006)
  AUTHORS   Pasquier J, Cabau C, Nguyen T, Jouanno E, Severac D, Braasch I,
            Journot L, Pontarotti P, Klopp C, Postlethwait JH, Guiguen Y and
            Bobe J.
  TITLE     Gene evolution and gene expression after whole genome duplication
            in fish: the PhyloFish database
  JOURNAL   BMC Genomics 17, 368 (2016)
   PUBMED   27189481
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2006)
  AUTHORS   Westlake CJ, Baye LM, Nachury MV, Wright KJ, Ervin KE, Phu L,
            Chalouni C, Beck JS, Kirkpatrick DS, Slusarski DC, Sheffield VC,
            Scheller RH and Jackson PK.
  TITLE     Primary cilia membrane assembly is initiated by Rab11 and transport
            protein particle II (TRAPPII) complex-dependent trafficking of
            Rabin8 to the centrosome
  JOURNAL   Proc Natl Acad Sci U S A 108 (7), 2759-2764 (2011)
   PUBMED   21273506
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            LO018153.1, BC095215.1, LO018516.1, CABZ01077406.1 and CU565476.11.
            
            On Aug 8, 2023 this sequence version replaced NM_001020581.2.
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: lack of evidence for use of
                                                upstream AUG
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-219               LO018153.1         552-770             c
            220-252             BC095215.1         225-257
            253-315             LO018516.1         2743-2805           c
            316-586             CABZ01077406.1     4536-4806           c
            587-746             CU565476.11        37913-38072         c
            747-842             CU565476.11        35025-35120         c
            843-920             CU565476.11        29608-29685         c
            921-1124            CU565476.11        23063-23266         c
            1125-1253           CU565476.11        19411-19539         c
            1254-1366           CU565476.11        18099-18211         c
            1367-1466           CU565476.11        16564-16663         c
            1467-1536           CU565476.11        10970-11039         c
            1537-2006           CU565476.11        7350-7819           c
FEATURES             Location/Qualifiers
     source          1..2006
                     /organism="Danio rerio"
                     /mol_type="mRNA"
                     /strain="Tuebingen"
                     /db_xref="taxon:7955"
                     /chromosome="4"
                     /map="4"
     gene            1..2006
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="RAB3A interacting protein (rabin3)"
                     /db_xref="GeneID:553605"
                     /db_xref="ZFIN:ZDB-GENE-050522-323"
     misc_feature    294..296
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="upstream in-frame stop codon"
     misc_feature    324..326
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     MKIFWA"
     misc_feature    324..326
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="upstream_AUG_codon; putative N-terminal extension:
                     MKILWA"
     CDS             342..1619
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="rabin8"
                     /codon_start=1
                     /product="rab-3A-interacting protein"
                     /protein_id="NP_001018417.2"
                     /db_xref="GeneID:553605"
                     /db_xref="ZFIN:ZDB-GENE-050522-323"
                     /translation="

MASEPLEGFHEVNLASPTTPDVHGVIDPSPPKHNAPPSTLYRTHSLSSSQNAASALRADQLPTQPVYSAPRHLGGDDTLNGSGNDPAAVDAVDADGEDGLGPSTDGLSRLRSPSVMEVREKGYEKLKEELAKAQRELKLKDEECERLSKVRDQLGQELEELTASLFEEAHKMVHEANLKQATAEKQLKEALGKIDVLQAEVAALKTLVLSTSPTSPCKEMPPGPKAPFKKGHVRNKSTSSAMLGSQQEVAVTQPIVRECKEVDSLLFTEFKAWKEEPTLERSCSFLERIYREDIYPCLTFSKSELGSAILEAVEQNTLSVEPVGFQPLPVVRASAVECGGPKKCALCGQTKTCKHRIKFGDSSSYYYVSPFCRYRITSVCNFFTYIRYILQGLVKQQDAEQMFWEVLQLRKEMSNAKLGFYKDEL"

     misc_feature    753..959
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="GDP/GTP exchange factor Sec2p; Region: Sec2p;
                     pfam06428"
                     /db_xref="CDD:428938"
     misc_feature    1032..1610
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="Rab11 binding domain of Rab-3A-interacting protein
                     (RAB3IP); Region: Rab11BD_RAB3IP; cd21068"
                     /db_xref="CDD:411032"
     misc_feature    order(1287..1307,1470..1472,1479..1484,1491..1493,
                     1503..1505,1518..1532)
                     /gene="rab3ip"
                     /gene_synonym="zgc:110270"
                     /note="Rab11 binding site [polypeptide binding]; other
                     site"
                     /db_xref="CDD:411032"
ORIGIN      

atcatgaagcgggatggtggcagccggtggctctgtcgtgtctttgtctggcccgggttactgtcgttaactgaggactaattaattgagagaaagacatgcttatcaagagggaaagcgcgagctgtgtgatcgtgctttaatatcaaccatatccgtgtattgtttgaaggaggagcgggatacatgacagtcacagacgcaatcccttcaggacatagacaaatcaggaatcagacgtggtttatgaggtgaaagcgttcttctgctgttcctgccgacttctaaagctttaaacatcatttcatcacaatgagtgctgtatgaagatcttttgggctatggccagcgaaccgctcgaaggtttccatgaggtgaaccttgcgtcccccaccactccagatgttcatggcgtcatcgacccgagtccaccaaagcacaacgctcctcccagcacactgtaccgaacgcactcgctgagctccagccagaacgcagccagcgctctccgggccgaccagctgcccacccagcctgtgtactcagcccctcgacacctgggcggagacgacaccctcaatggcagtggaaacgatccagcagctgtggatgcggtggacgctgatggagaggatggtttggggccgagcacggacggtctgtcccgcctcagaagtccatcagtcatggaggtccgggagaaaggctacgagaagctgaaggaggagcttgctaaagcacaacgggagcttaagttaaaagacgaggagtgtgagaggctttctaaagtgagagaccagctggggcaggagctggaggaactcactgctagcctgtttgaggaggctcataagatggtgcacgaggcaaacttgaagcaggccacagcggagaagcagctaaaggaggcgctggggaagatcgatgttcttcaggccgaggtggctgctttgaagactttggtcctgtcaacttctcccacatccccttgtaaggaaatgccccccgggcccaaagcgccctttaagaagggccacgtccgcaacaagagcacgagcagcgcaatgttgggcagccagcaggaggtggcggtgacgcagcccattgtacgtgagtgcaaagaggtggattcactgctgttcaccgagttcaaagcgtggaaagaggagccgaccttggagagaagctgctccttcctggagcgcatttacagagaagacatttacccgtgtctgacattttccaagagcgagctcggctctgcgatcctggaggcagtggagcagaacacactgagcgtggagccggtgggattccagccgctgcctgtggtcagagcttctgctgtggagtgtggaggacccaagaagtgtgccctgtgtggtcaaaccaaaacctgcaagcacagaatcaagtttggcgactccagcagctattattatgtgtctccattctgccgctatcgaatcacgtcggtctgcaacttcttcacctacatccgttacattctccaaggactcgtcaaacagcaggatgcagagcagatgttctgggaggtcctgcagctacggaaggagatgtccaacgccaagctgggcttctacaaagatgagctgtgaacagagccgtcacagatgcgtgaacgccaccgcctgatccccggccgctctttgaccgtcctgtcagagcggcttcacagggaccaccacaccttattatattcattgatgatgaaggacgagaagaagacactaaagcatgaactgtagccggaggttgcgttcggtcggatgaaacactcaaataaaggctcctcaagctctgttagattgatttgttcagtgctgtagctagctgtatgctgttgtgccgttgtgttttgtgtatctggaatgttctgtttgtaccaccatgtgtatttttcctcctcagactcgtctagcctccttcattttgagtttagtgcctttctggaagcctgaataaagttctgaacctccagagga

//