GGRNA | Results

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PREDICTED: Telopea speciosissima uncharacterized LOC122670138 (LOC122670138), ncRNA. (148 bp)

alignments, including 14 samples with support for all annotated introns" /db_xref="GeneID:122670138" ncRNA 1..148 /ncRNA_class="lncRNA" /gene="LOC122670138" /product="uncharacterized LOC122670138" /db_xref="GeneID:122670138" ORIGIN // tttctacaagagatggtgtgcgaaacagtttttaatggaaaggaagaacttagtcaatctcttcttgaaagcaagcgaggaagacaagctgaaggtattggaattgtatatgccagatactgaggacatcaatgaagactgatgaatg

position 55

XR_006334132.1 - Telopea speciosissima - NCBI

PREDICTED: Citrus sinensis protein STRICTOSIDINE SYNTHASE-LIKE 4-like (LOC102608831), mRNA. (1352 bp)

agtgatttcaagctcatggctccgaagagtttcctgctagcttgtttacttgcttttactctacaattcttcttctcgcctccagtatcatcttcagcttctcttctttccacctccaaggaaagctcctctatgaaggatttgattaaacttggagaaggatgtgtgagccacccagaggatgtttctgttgtggttagaaagggtgcgctgtatacagctactaatgatggttgggtcaagtatttcatcctccataatgaaaccttggttaattggaagcacatagacagtcaatctcttcttggactcacagcaacaaaggaaggtgacgtcattatatgcgacagtaaaaaaggtttgtttaaggttaccgaagaaggcgtaaaggttcttgatccagatgtaagatttgcaaatgatgtgatcgatgcatcagatggcacgttgtattttactgtctcaagcaccaaatatacccccgcagatttctacaaagacatggctgagggaaatccttacggccagttgctcaaatatgatcctaaatcgaaccaaacaacagttttgcaagagggattttactttgctaatggcatt...

position 323

XM_006485118.4 - Citrus sinensis (sweet orange) - NCBI

PREDICTED: Citrus clementina protein STRICTOSIDINE SYNTHASE-LIKE 4 (LOC18050416), mRNA. (1112 bp)

position 298

XM_006445687.2 - Citrus x clementina - NCBI

PREDICTED: Rousettus aegyptiacus uncharacterized LOC107512815 (LOC107512815), transcript variant X2, ncRNA. (319 bp)

GeneID:107512815" ncRNA 1..319 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X2" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacagcaaaacgacgccagacgccgttggtttgtgaacggccctcaccacgcggtggacgacgccccgcagaccggcgcccaaaccctgggagcctgcgaagacctcg

position 115

XR_001597394.2 - Rousettus aegyptiacus (Egyptian rousette) - NCBI

PREDICTED: Camelus ferus uncharacterized LOC116657067 (LOC116657067), ncRNA. (330 bp)

gene="LOC116657067" /product="uncharacterized LOC116657067" /db_xref="GeneID:116657067" ORIGIN // accacatcacaaacaaaagtcctaataaaagtcgctgactaggactatcctcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacacatgaaagagatgtatttgctcagggtctatcaatcttgttctgcctgttttctcaagtcagcagccttatctttacatttactccactcaatctcttcttgtcattttccctttctgtctgaaaataactacccccaagtctgcaaagcatcatctttgtattccatttcttgttgtaaagagtttgtgacattctgcgagatggacatgctagatcggaagagca

position 193

XR_004311999.1 - Camelus ferus (Wild Bactrian camel) - NCBI

PREDICTED: Telopea speciosissima uncharacterized LOC122662367 (LOC122662367), ncRNA. (304 bp)

product="uncharacterized LOC122662367" /db_xref="GeneID:122662367" ORIGIN // acagaacaaactcactcttactgaaaatcaagtttcgggggtgaatgtcttctcgcaaggtttctctggaaatcattttaaggggaaatcttctttccagaaacctgcttatagtttcctagagtccgtgctgccggggaaatcatcttcagcaaaaaccagttatttgcagggaagagagtggaaatgatatacgtggacatcttcaatctcttcttgtactaaatgtttctcaacaagagagacatgtgctgtaagcctgtaactgcgaagaattagatctcgaagggatctatttcgtttt

position 207

XR_006333008.1 - Telopea speciosissima - NCBI

PREDICTED: Podarcis raffonei uncharacterized LOC128424167 (LOC128424167), ncRNA. (394 bp)

experiment="COORDINATES: polyA evidence [ECO:0006239]" /db_xref="GeneID:128424167" ORIGIN // ggtggggagagaaggagactctcctgagggcaacagtgagagaagggaacttgccagtggcccatctagtcctggatcctgttctcacagtggccaacaggcatcaatttacacttatttacattgtttatgttgaattgcacttgccattttattacccattcactcaggttggagagcttgttttcacaatctcttcttgtttgaatgaccctgaacaatttagcatcatcggcaaacttcactgctcacccctaattctcaattgtttttgaacaagttaaatagcagaggtctcagtgttgatctttttaaaataaaaaataaaataaggtgttgttaaagttttttcataatacaataagataaaagaaactaaataaaaacaaaaaca

position 190

XR_008332942.1 - Podarcis raffonei (Aeolian wall lizard) - NCBI

PREDICTED: Rousettus aegyptiacus uncharacterized LOC107512815 (LOC107512815), transcript variant X1, ncRNA. (409 bp)

GeneID:107512815" ncRNA 1..409 /ncRNA_class="lncRNA" /gene="LOC107512815" /product="uncharacterized LOC107512815, transcript variant X1" /db_xref="GeneID:107512815" ORIGIN // cgtcagccggcgctgaactgtgacggcagcgctcacggacccgcggctcgtgacggcattattgggggcgaccatcgacctggatattttttctgcatatgaaaccccgactgacaatctcttcttgcgacgctcgacggtgaagcgccctgttcttccagcagccacggcctctcatgagaagctgctgtcatttaagtgacaacctgcttacaggaaacctctccatgaaagaagaagaaaacaggtttttatcgaataagcagtaaaccagaacgtgacgtgcatccaggcaatccagtgggacatctcacctggacagagccagactggtgcgacctgtcacacacacgttctcgggatgagcaccagcttgtcttcaggtaagaggacttgacggcaccattta

position 115

XR_001597393.2 - Rousettus aegyptiacus (Egyptian rousette) - NCBI

PREDICTED: Lontra canadensis late cornified envelope protein 1A-like (LOC116858788), mRNA. (414 bp)

ORIGIN // atggggcccaaggtccaaaacaggagctatgaggccttccaggtggcacttgccaaagagaatgaggcagaaaatcaaacttccgactccatcagcgagatgtcctaccagcagaatcagcagcagtgccagtcccctcccaagtgtcccaccccgaagtgccctccaaagtgtcccccaaagtgcccctcaatctcttcttgctgcagtgtcagctctgggggctgctgcagctccagctccgggggtagaagctgctgcagttttggaggtggcagctcctgcctgagccaccacagacgacacaggtcccactgtcacagatgccagagctctggctgctgcagccagccctcagggggctccagctgctgtggagggggcagcagtcagtcctctggaggctgttgctga

position 191

XM_032843692.1 - Lontra canadensis (Northern American river otter) - NCBI

PREDICTED: Cygnus olor uncharacterized LOC121066939 (LOC121066939), ncRNA. (369 bp)

LOC121066939" /db_xref="GeneID:121066939" ORIGIN // agacacacctgatgatttattattttcagtagcttatttgtgaatatgaaaaaatgtctttcttgatattcaccaaatgatataaatgcctttactctccagctcttcattttttctgctcactggtgctttgaatgcagtggaaaggcatttctggtctccatggcttctcttaaatgcacgcagagaagggaacataatagagatgatgagccctagcaaattagccaactgcaatctcttcttgttcagttaacgcgcctgtacagccagataccagccacgggagcaaagggctgtgagaggagatttggagcccaagtataggagtagagaagctctcagctgtttgtagcatgtctagaagca

position 235

XR_005818030.1 - Cygnus olor (mute swan) - NCBI

PREDICTED: Beta vulgaris subsp. vulgaris uncharacterized mitochondrial protein AtMg00310-like (LOC130591735), mRNA. (381 bp)

ORIGIN // atgaaagaagctgcaagggtggaaagagaaattgctatccaccccgggaaagaggtgcttattaaattagtggcgcaagctattcccacgtatatgatgagtgtattcagccttcctagcggattgattgatgagattcattcgttgctggctcgattttggtgggggtcctctgacactgataggaagatgcattggcatagttgggatacgttgtgctaccccaaatcgatgggcggtcttggctttagggacctacactgcttcaaccaatctcttcttgcaaagcaagcatggcggttatgtacgggggaccagactcttctttatcggctgctgcaagcacgatactttaagtcttcggaatttctggaggcgtga

position 271

XM_057395547.1 - Beta vulgaris subsp. vulgaris - NCBI

Laccaria bicolor S238N-H82 uncharacterized protein (LACBIDRAFT_325715), partial mRNA. (411 bp)

Wuyts,J., Martin,F. and Grigoriev,I.V. CONSRTM US DOE Joint Genome Institute (JGI-PGF) TITLE Direct Submission JOURNAL Submitted (19-NOV-2007) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA atgtactctcggtctccatggcctgttgcatctcctgctgcaccactctcaagtggtaatcaatctcttcttgtcattcacggcgaacttcctcttgcctctgttctcaagtatttggatgagaattgtgtcgatgagaccaacattgtcgatggtgacacagacgtcgtcaatggtgacgcagacgtcgtcaatggtgacgcagatgtcgtcaatggtgacacagacgtcgacggtgatgtagacgtcgtcggtgttgacacagatggtggcacagacgtcgtcgatgatgacacaaatggtggcacagacgttgttgatggtggcacagacactgttggaggtgacacagacgtcgaggttgagc...

position 61

XM_001879458.1 - Laccaria bicolor S238N-H82 - NCBI

Penicillium citrinum uncharacterized protein (N7469_005960), partial mRNA. (414 bp)

Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgccttatgtagctgctacaattaaagaggctatgggatggagggcagttgttccgttggcttttccgcatgctactactcaagcgtctgtgactgacgttaatctccgtgatcagtacggttatggacccggtcgtcggattcgtcctgggatgcatcttgctgaacgcaatctcttcttggctatcgcgaaaatgagttgggtatttgatgtcggtactggtaatggtgaaaagacaaggttgcctattgaaccggatgttgatcatcagacgggatattgggagggcttgatcttgggtgctcggccattcccttgtcagatgtctgtgaggtctgaggcgagaagagatgccattgtgcgggaatttcagaagatgaattctgatatgttttcgagattcgcattttga

position 171

XM_056644879.1 - Penicillium citrinum - NCBI

Penicillium angulare uncharacterized protein (N7478_008204), partial mRNA. (438 bp)

JOURNAL Submitted (13-DEC-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcgcgccgctttgacgtgcagttgttcccatggattctatatggagaggaaaattgtgtacagcgttggtttgggatttatgattttcagcaaagtcagtctcaaaaagactgataggctcgtccttgacacggagattatcaatctcttcttgatcaatctcatcaccactgccaccatcgaagctctcagggatatggtagacaacgtcctcagagaagttgtaactcgcagaagtgtcattctcgcacgcaaaatcgtcaatgttgccaaaaacaacatcctcgttctcataatcaatgtccgattcagagacccccggggcctgctcaagaacgaattctggatcctcggggacggctgccttcttttgctgtggatgggatttcggttgagcagcagcagcagcagcagcagaagatggagcagactgtaa

position 144

XM_056924418.1 - Penicillium angulare - NCBI

PREDICTED: Saccostrea cucullata uncharacterized LOC134258183 (LOC134258183), partial mRNA. (440 bp)

protein LOC134258183" /protein_id="XP_062596710.1" /db_xref="GeneID:134258183" /translation="MMQSLLVFVISVASIKTLHGSNGVMYPSSLSTLNEVPNCPRNQHDWEKAAARKDCNQISKSDNKPFVYHCLINEWANATVEVCAPTWFVSGFCAMYSSSDARVIDNFNYDCTHYTPPCPQRYISSEAYKYGVCYDI" ORIGIN // tccattaacacaaagtcttggtaaaaaagtaaatgatgcaatctcttcttgtatttgtcatatcagttgcatcaataaaaacactgcatggaagcaatggagttatgtatccatcgtcattgtcaacgcttaatgaagttcccaattgtcctagaaatcaacatgattgggaaaaagctgcagccagaaaggattgcaaccaaattagtaaaagtgacaacaagccctttgtttatcactgtttaataaatgaatgggcaaatgctacagttgaagtatgtgctccaacatggtttgtctcaggattctgtgcaatgtacagttcttccgatgcaagagttattgacaactttaactac...

position 39

XM_062740726.1 - Saccostrea cucullata (small rock oyster) - NCBI

PREDICTED: Acropora digitifera uncharacterized LOC107337268 (LOC107337268), ncRNA. (444 bp)

including 41 samples with support for all annotated introns" /db_xref="GeneID:107337268" ncRNA 1..444 /ncRNA_class="lncRNA" /gene="LOC107337268" /product="uncharacterized LOC107337268" /db_xref="GeneID:107337268" ORIGIN // cagaatgggtgttcctcttgtggttttgcttgaattctgttctgagggtgataacgtcttgatgccgtcaatctcttcttgtctgctaatgagtggctcaaatttgttcccacgaaagaggtggaaaatccgttctttggacaaacaagtaattttgggattccagcatcttggtctttaatgtttggatcaccaatgcattggcatggaaacctattttagtgaggcagactcatgagttatgtacttaccataactttcacgtttgtttgatcactgttttgcgcttagtttagcaaggaacctctccatgttacgggtcattatttgtagtatttgctcaaaacgttaccatgaaacagctaccacgtgtcaaa...

position 69

XR_001562778.1 - Acropora digitifera - NCBI

PREDICTED: Ahaetulla prasina mucin-2-like (LOC131184643), transcript variant X4, mRNA. (456 bp)

gcggcggctgctgctgctgctgcttctcccaggggcgctgctgagcttcctcccgcaggcgaccccgcacccgagtgtgacacaccgttacgaaaatgttaaagcagtggagatatctgtgcagccaactgcagttgaagaggttatatcgggagggaaagatgctgttgaagtccagcatcaatctaaaaagaagaaaaatgacattatagagttgaaagagaccttggaggtcttctagtccaaatccctgctcaagcaggagatcctatccattctggacaaattactatccaatctcttcttgaaaagttccaa

position 433

XM_058156240.1 - Ahaetulla prasina - NCBI

Trematosphaeria pertusa uncharacterized protein (BU26DRAFT_500137), partial mRNA. (528 bp)

CA 94598-1698, USA atgaccgacaccgcggactttgagcaattttgcttaactacactctacaatgctattccgatgctcgacaaccccagcgaccggtacgagtggaataatagggtgtgcgattttattgagatttcctctgtcgccgaagatggtgctcctccaccaaacaaagatcaggcaaaggaatggtatcgccgacagaaactctacacagccatgatcatgaagaagctgtcgcacaacgctgcgccgcgaattaaggccttagggatcagtgacgtgcaatctcttcttgaagctgtgcgagagcgcttcaactttagccgcctcaaggacgaggcaatcgaggaagagtaccgatccggccagcggggcaatgagccggcgaaggcgcagcgtgttagcaaccagattcaaactcttacccgccagatattgatatcaccggacgaaaccagatgccagattcacatagacaaggttccgttttgctcattttgtcccaccaaactcgcacagcaacccagaaacatttag

position 274

XM_033826478.1 - Trematosphaeria pertusa - NCBI

Arabidopsis thaliana uncharacterized protein (AT2G18970), mRNA. (531 bp)

AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA tccaatctcactcaaaatctcctccatgttcatctcttctccacctggcaaaagcttctgcaattccttcaatctcttcttgatctctcctccttcttcttcttcgtcgctgtcttggtgtttttctccaccttgtctcttgctcgatctttctagaatctcggaaggagaactactagtgctaattggatcatcataaggggaagataatagcttctgttgcaagaaacggctccacgcgaattcttgagcagacaatgcgaaagccatgtctacttcatgtttcacgggttcttgtttggttggagagaaaagactcgctttctcttgtttataatttgcctctccatgtgaaatttgtttgcttcgtcggaactct...

position 70

Synonym: F19F24.17; F19F24_17
NM_127454.2 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

PREDICTED: Arabidopsis lyrata subsp. lyrata ubiquitin-conjugating enzyme E2 36-like (LOC110230388), mRNA. (391 bp)

gtgattttagacattgggaaatggtggaatcatatgagcagcatggtgatgaaaatgatgggcatgttccatatgtaccttctggtgacagaattatggaggatatgcgggattctatcactacagagatggctgaaggaacgagacttccatattaacagctcccggtatttcaatgttatgattcttggacctacacaatcaccttatgaaggagttgggtttgaatcgagaagcaaatacttgtttggtaaagtctctatctagattaagcaaatcgaggaacaaaaccaatctcttcttgctctgttttaagacactgctttgattattatgtccctaatcttacattatgaatgtatttcactaaagcagtgacattggttggttt

position 292

XM_021033133.1 - Arabidopsis lyrata subsp. lyrata - NCBI

Caenorhabditis elegans Protein suex-1 (suex-1), mRNA. (413 bp)

org REFERENCE 4 (bases 1 to 413) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA aaatgcaatctcttcttgtattctgtcttgccacaattattctatcaaacttcacagaggcttctgcagatttggagacagcttcacaaagtctgaagcatccgaggaatttgggatggaaggctcctgaaggacatcgcgaaaaacgatatggtggatggggaggtggatatccctacggcggctacggtggatatggtggaggttacggtggcggatatggaggcggatacggaggagggtatggcggacgatatggcggaaactatggaagcagctcatggggatcatattcgagttatagttctggtggatacag...

position 6

NM_062648.3 - Caenorhabditis elegans - NCBI - UCSC - WormBase

PREDICTED: Manis pentadactyla uncharacterized LOC118908090 (LOC118908090), ncRNA. (484 bp)

ggcctcttatccacgtctgcagaaaaatcactcacgggatttgacatctgctgcacaccatggagaagacaccttattgatgaaaaagaacacagttcctgaggattgctctgggatggggaaaacttgatcatcttctgccccttgtgctcacagaaactgtttgaggtctgtctcctggggaccccaccctccatttttaggactgaatacctgaagtacagttgtcatcctgttgaatcttatgttacctgcattttatgtcttcaacttctctggttttgtttaagcaaacaatctcttcttgagaagggacagaagggaaataaaattctagatacccaatgtgtccaaaaa

position 422

XR_008998512.1 - Manis pentadactyla (Chinese pangolin) - NCBI

PREDICTED: Haliotis rubra biogenesis of lysosome-related organelles complex 1 subunit 3-like (LOC124274838), transcript variant X2, mRNA. (1880 bp)

aatcttcagttccacagtcacctggtgagtctggggagccacgcctacatgtctgctgccaagcacatcaacaacaccacacagcagctgctcaagtcacatgttgctatccaggacgtgtctcacaacatgaggctgatgaccaacgacctgttccgcctggaggacaagatcaacattatctcctcctgtagcctgttacctgacatcaacatagaactgtcgtcatagcaacaccatctcctcctatgacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacaccatctcttcttgtaacctgttgcttgacatcaacgcagaactgtcatcatagcaacaccatctcctcctataacctgttgccaggcatcaagatagaactgttgtcatagcaacacaatctcttcttgtaacctgttgcttgacatcaacgcagaactgttgtcatagcaagaccatctcctcctgtta...

position 649

XM_046710202.1 - Haliotis rubra (blacklip abalone) - NCBI

PREDICTED: Haliotis rubra biogenesis of lysosome-related organelles complex 1 subunit 3-like (LOC124274838), transcript variant X1, mRNA. (1893 bp)

position 662

XM_046710201.1 - Haliotis rubra (blacklip abalone) - NCBI

PREDICTED: Herrania umbratica uncharacterized LOC110427542 (LOC110427542), mRNA. (417 bp)

misc_feature 144 /gene="LOC110427542" /note="gag-polypeptide of LTR copia-type; Region: Retrotran_gag_2; pfam14223" /db_xref="CDD:464108" ORIGIN // atggcagaatgcagttctattagaccccatgtgctgaagatgattgaactcatcgagagacttggacaattgggattagcaatggatcatgagcttagtatagacttagttctacaatctcttcttgacagctttagtcagttcatgttgaacttccatatgaatcgattggaagccacttttcttgaacttttgaatatgctaaacatggtagagtggtccatcaggaaagataaaggatcattgcttcttgtttcttcttttgaggctcatacgaaacaacagaagaagaaagcccaaaaagggaagaaggtaaaatctcaaaatgagaaggtgctgaagcctaagagaggtgtcaaaaaggacaaagagaaagatattttgccatcattgtggcaaacttgggcattggaatag

position 115

XM_021443097.1 - Herrania umbratica - NCBI

PREDICTED: Drosophila subpulchrella uncharacterized LOC119551309 (LOC119551309), mRNA. (513 bp)

tgcatagagctgaagtgcttctgcatcctgatagccatcgtggaggtgctcatccgcgggttggatcgtttttttgtggatcgcgacagcatcctgggatttttgtccctcgtggtgagcggtatctacgtaatctgctgcatattccttcttcttggagccgtgctgggggtaaggtactttctgttgccctacctctcggtttcctgcctccgcttccttattttggttgccgagggcgtgtttgtggccacggaaggcttcgtcaatgaatatcttgtcttcgatgttctccaatctcttcttggtctatacttttggctggtggtcttctcctactacgatctgttgaaggacacctgagtttatatatttgtgcttacttttatattgtaaaaaatacttgtttagatctgagt

position 389

XM_037860603.1 - Drosophila subpulchrella - NCBI

PREDICTED: Fukomys damarensis uncharacterized LOC104847975 (LOC104847975), ncRNA. (576 bp)

RNAseq alignments, including 2 samples with support for all annotated introns" /db_xref="GeneID:104847975" ncRNA 1..576 /ncRNA_class="lncRNA" /gene="LOC104847975" /product="uncharacterized LOC104847975" /db_xref="GeneID:104847975" ORIGIN // ctggtgaatggaggctgacttcttgctctccaagaactgcaagtagctacccaatctcttcttgaaatcagcagtctgtgagctcactgtagtggggcagccagaaccttaaagcctaacaatgggacagtgacaagaagagaggtggagagaaactttcacagtccccctcttccactccaagagaagaaacacacggctttattatggtaccaagtccacctccagatagaagcaatacatctcctcttgaacaagactgtttctccagtttaagcaaatctatccaaactacctccaagctgcagtgaatcatacggtggctgaaggaactacactaagaaggacttgaaagactt...

position 52

XR_776269.2 - Fukomys damarensis (Damara mole-rat) - NCBI

Kwoniella europaea PYCC6329 uncharacterized protein (V865_001725), partial mRNA. (447 bp)

cagcgagtggcgaacaatctcatgccacccataatactcaaagtcaaaatacgactggtcaatccaattcgaccgatccacctcggagctcacctactctggaacgtaccctctctgaggcgactactgtcgtggatgtaggtgccggtcaatctcatatcgacctacccagcttcacggtccgaacaactggtcaatcctgctgcgaaacccattcaggcgagattgcgaaatgtatgtgttatagcgttacgtgcgtttgtggggcgggtttggcgattggtacagtggcggcaatctcttcttgctgtaatggatgccctcccttctaa

position 410

XM_066225539.1 - Kwoniella europaea PYCC6329 - NCBI

Penicillium crustosum uncharacterized protein (N7487_009046), partial mRNA. (531 bp)

JOURNAL Submitted (30-NOV-2022) Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atgcaggatatctacactaagatggatacaatggtagcggtgattctaacagacgtaaactttatgacaaacacaccgataattaccgatcaagcggacgagcaggaggtctatgagggatactcaaattttgtacaatctcttcttgagctcatggacgccgtatcgagcagcgcagcccagctgaaatcgatcaacgaaacaaccaagaataacgttccctttggaattcgcatcttgcaaactgccgttgacgtgagttccctaattaactcttcgctaccacctgaggagatgatcgatgagatgctgacaccttacaaggcctacttctacaacatcatcggtctcttcccagccaacagcgcatacaacgcccaggccaacaaccagaaggctcaggtggatacgcattgcttccaggccgtctgggcatttgatcgcaggtat...

position 136

XM_056876776.1 - Penicillium crustosum - NCBI

Penicillium brevicompactum uncharacterized protein (N7506_009931), partial mRNA. (537 bp)

Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers Vej 7H, Aalborg, Nordjylland 9220, Denmark atggcagcctcgttgtcttcgtcggttacatcgctgcagtcatcgctgcagctgctggataattcaataaccaccctcgactcgggcgtgagcgactttcctcgcctttgtaaggtcctttctacaacgcgacattttgagctactaccagagccaacactgcgtgaggcacaacaatctcttcttgatgagatcacccccagcatcgcccatcttctcacactatcatcaaaccacgtcgaaaagctcgcacgccgtgaggaaagcttaaaagcaaaatgcgatcttcaagaaggaagactctcatctaatgcagagagccgcccatctgctcctcgcagtcaaccccagagcagcgcattgcggggtcgcatggcggggtctagcgctggctcatcgggcagcgcagcagccaaagccgcagaatacaagagactcgtacagaagaaagagcgactcaagtttgcggttgaccgattgga...

position 175

XM_056959224.1 - Penicillium brevicompactum - NCBI

Aspergillus piperis CBS 112811 hypothetical protein (BO85DRAFT_383017), partial mRNA. (453 bp)

gtcttaaagctcatcgaatccaccaccatggatttccgcaacctatcattcactctcctcctgctatccactacagtcatgttatatttcagggctctattagcgcatcccatccacattattagcacccctgaatcagtgcagactgcagaaccagcgccaaccgacgccctcgccttcctcgacgagcccgtcttcaaaccactggcatctcacatagcagaccacccatatccatggcgtgataaacgtccattccaggagaccaattatgcgttactcatgggtgcagttcaatctcttcttgaggctgaggttgacgaggaagagggtggtgtgggtttgaacgagggtcatgggcaacaggacgtcgttgagattaactcgtctgagacatacattctctgggttggggataaggatgatgagaagtgttcttgcgcttag

position 301

XM_025656494.1 - Aspergillus piperis CBS 112811 - NCBI

Brettanomyces bruxellensis uncharacterized protein (BRETT_000934), partial mRNA. (543 bp)

Research, Australian Wine Research Institute, Corner of Hartley Grove and Paratoo Road, Urrbrae, SA 5064, Australia atggttgcataccaatttagttccgtttgtgagaattgtgaactaaatgtgaacatgagtgactcagataaaacagacaagaaatttccacgctcttctctttccagaacaactacaacgactagcataactacccctgttcacccaatggaattggttgtacaatctcttcttgaatcacctcttgagcttctaaatttgagtattcattcattgtatgaatcgcaaatgattctcacaacaatattagatcgaatgcagcggaaacttgacaaatgtcttaggggcattggtaaaagtaggcaagaaccaattactactgacacagatacgcaaaatttacaatatccaaacgagcatcgaaatagggcaaactcagatgatgatctgacaacacagccaggaccagacaaaagcttgacaattgaagaatatgctgccagaattcatacgatcaagctccgcattgtaaaa...

position 163

XM_041279492.1 - Brettanomyces bruxellensis - NCBI

Meira miltonrushii Isochorismatase hydrolase (FA14DRAFT_152158), partial mRNA. (618 bp)

caaaacttttgaggggcgctcaaatcttggagatcccagttttcacaactgaacaaaactcgaaagctcttggatcgacggtagacgttctcaagaaagatatcccagaaaattccacaatcgttgacaagacccgattcagtatggtattggacgatggaacaacagataaatggctacgcgatcacaaagttcaaaatgtgatgattgtcggaattgagagtcacgtatgcgtcttacaaacgacattggacttgctcaagaaaggcttcaacgttttcatcattcgtgatgcaatctcttcttgtaataaacaagaagttccacttgccatcgaaagaatgcgtttggctggcgctacaatcacaacatccgaaagcgctctgtttgaactgatgctagattcaaaacatccccatttcaaagctatcagtgggctaatcaagacggaaaaggacagtacaaaagccgctcttgaagcactcacatcacgtatttga

position 413

XM_025497511.1 - Meira miltonrushii - NCBI

Rhizopus delemar RA 99-880 uncharacterized protein (RO3G_09128), partial mRNA. (483 bp)

Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, MA 02141, USA atgaccttcaatccatttgatttattttattctattacagtcatcactcttgattattcttgtaattatatttattcgagaatatctcgagtgttaccgcttaagaaaccagtggaagagaacagagaattaaaggatgaatcagcaagtaaagaatcagatcggatcgtatcacaaaatcgacagcgtcacagttcaatctcttcttgcccagcaaatgacacaccactcattctttcaccttctacttctacctcttccctttggagtttagattcaaatcgttcaagagtagaagaaatgatttatttattcgaaaccggaaatcatctacagaaacgaagatacagtatggatgcttgttatccaacttttattcgagaaagaaaatttgaatatttacccactgtgaatgaatggagaaagagagagaatagcacgacttttcctcctattcgtttgtcgacatccaattccacgtaa

position 197

XM_067663713.1 - Rhizopus delemar RA 99-880 - NCBI

PREDICTED: Rhodamnia argentea U-box domain-containing protein 7-like (LOC115752846), mRNA. (560 bp)

ttcctcaggaacaaggagttgatattagctgccggagtcgttccgcttctccaggaaatgacatccaaccatgactctcatccatcagcaacggctctatatctgaatctttcctgccttgaagatgccaagcccgtactaggcttgagtcaggctgtaccctttcttacccagcttcttaaagatgaaactgcacctcagtgcaagcttgatgctattcacgccctttacaatctctccacctaccatgacaatattggatacctgccttcggcaggcattatcagtggccttcaatctcttcttgcagatctagtgaccaaatgtggacagaaaagtcaatagctgtccttatgaatttagat

position 490

XM_048275127.1 - Rhodamnia argentea - NCBI

Puccinia triticina uncharacterized protein (PtA15_6A684), partial mRNA. (633 bp)

cctctaccaaagatgccaacctgttgccaccagttacgcgtcatgtgctggctgtgcttctgttgctcaaagctccagtagtcaagtggccacttttcaacaaagcatccagcgctccttcaccacttggcaagagatcatcaagatcggaaaatcccgtttctccgacagatggcaatctgacttcgcaccttcatttgcaagattcgatgtcgttgttaaggcggcgaacagtgcttgttcgtccttgaatctcaagctcgatgtgctcttgaaaggtttgcgattggacctcaatctcttcttgggcatcaacatcaacctgggaggcatccttggaatcgtgggctcacttctcggcgggatcctcggacgaagagaagttcagctcttggaggaatag

position 525

XM_053170415.1 - Puccinia triticina - NCBI

PREDICTED: Prosopis cineraria uncharacterized LOC129311497 (LOC129311497), mRNA. (565 bp)

pfam09402" /db_xref="CDD:430586" ORIGIN // aacagcagcaaacaagggtgccgtaaaaggcggtctgagcatcccgctcggccggacacatcactctgatctcttccaaatgaagcgcgcaaaacccaagtcccattccaaaacttcaaatcattctcacaattcttctccttctttgaaatcgttcatagaaccccctcctgatttctttccctcgaagcacgagttcctcaggctcatcgtcgtccttgcattcgcatcagcagttgcttggacatgcaatctcttcttgacatcttttattaatccctccaccaagcccttttgcgatagcaacgtagactttccggattcattttccgatgattgtgaaccttgtccaagtaatggagcatgttacgatggcaaattggaatgtctccagggctaccgaaagcatgggaagttgtgtgtagaagatggagatattaataaatcagctaaaaaaatttcggacagagtaaaatgtagcctatgtgaagattatgctcagtatttgtgctatggagtcggatcagtttgggttcaagaggatgaaatatggaaaa...

position 250

XM_054953827.1 - Prosopis cineraria - NCBI

PREDICTED: Lingula anatina protein FAM84B-like (LOC106176727), mRNA. (474 bp)

ggcagtgttagattcccttgtgccgggagacctggtggagttccaaaggtcgtggctcttctcccactgggccgtttatattggtaatgaagaagtggtccattttattgaacgcaattcaggaggtgtcttcagttcctctagtgagcgttctatgacgggggtagttcgaagggattccttttggacagtggcagggaggagtaaggcgttcaaaaacaacagaagggacgccaaatacagctgtgatgtgatagtgacgagggctctgtcaaagctgggagtgagcgagttcaatctcttcttgagaaatagtgaacattttgtagcctggtgtagatatggtgaagagtgcagtgaacaggcacaaaccatctggacaatgtttttggggtctatggctgtaattgtggggggcattgccgcactcactggccttaggcgatag

position 321

XM_013559232.1 - Lingula anatina - NCBI

Rhizoctonia solani Lytic polysaccharide mono-oxygenase, cellulose-degrading (RhiXN_09028), partial mRNA. (567 bp)

China Agricultural University, Yuanmingyuan Xilu 2, Beijing 100193, China atgcgcttcctggctggtttattgactttggcgactttggcgtcgtccgttgtcgctcatggcattgtaactcaacctccaactcgcacactcgggagtgccatgattgcagcttgcggtgaaggtgctgtctcggctcaaaaatccaatgtcaagggaccgattgaaagccagattgccaagattgattccaactacaagcccgcgcaatgcaatctcttcttgtgccgtggccaacagtttgctgacaacaaggacaaagtccaaacctacaagactggtcaagtcgtgaacattgtactagacattgagaaccaccatcctgttggctatgcaaacgtatctgttatcgatactgccacaaacaagatggttggcaagcctctgattgcatgggatccttactttactggttatccgtaccctaaggatcaagagaacttcaacgtcactattccagagctcagcggcaaatgcaagactgccggagaatgtgttctacaataccactggtactcccgaacgg...

position 213

XM_043328844.1 - Rhizoctonia solani - NCBI

PREDICTED: Theobroma cacao uncharacterized LOC108661919 (LOC108661919), mRNA. (507 bp)

cgtcataaggatgacgatgatcaggcagcatgcgtgatgctaaccagtatgactcctgagctccaaaagcagtatgagcacatggatgtccaatccataattcttcatcttagaaaattgttcgataaggaatggcgcattgagagatatgagatctctaaagaactattccgatgcaagatggtagaaatgagttttcttagaccccatgtgccgaagatgattggactcatcgagagacttagacaattgggattagcaatggatcatgggctaagtatagacttaattctacaatctcttcttgacagcttcagttag

position 481

XM_018120908.1 - Theobroma cacao (cacao) - NCBI

Necator americanus uncharacterized protein (RB195_014921), partial mRNA. (579 bp)

taccggttttattcgtgtatccactttctgaggactgcgtgttaccaacctgacgcacggaaacaaagacgcgaaggagtcatactggtactactagtctttccttggattttgacagctgtgtttactttcggatcaatagcacttggttgctacaagagatataatcgtttcgcgttaatatacacttacagctgctcccattgcgacgttataccagggatatcgttcactgacgtgaacttttacggtggacaagctttaccctcaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattggttcgttttaa

position 430

Synonym: Necator_chrV.g19713
XM_064205395.1 - Necator americanus (New World hookworm) - NCBI

PREDICTED: Cucumis sativus ripening-related protein grip22 (LOC101211270), mRNA. (648 bp)

CDD:439250" misc_feature order(265..267,271..273,352..369,427..432,436..438, 496..501,505..507) /gene="LOC101211270" /note="putative effector binding site [polypeptide binding]; other site" /db_xref="CDD:439250" ORIGIN // atggcaaaattggcttgcttggtctcttttttctttttggttctttctcttttgggcctttctcaagcaatctcttcttgcagggagccatgtcaaaccttgaaaaattgtaaaggtcaattgatttgtataaatggccaatgtaatgatgatcccgatgttggaactcgcatttgttcaaccgacagtgataacggagcagatggagaaaaatttcgttgtgaggcatttggaagattacattgcaaaggcaaatcgttcccccaattcaaatgctcgcctcgagtgacttcctcaactcgagctatcctaacaaataatgactttagtaaaggtggggatggaggagacccgtctgagtgtgatggaaagttccat...

position 68

XM_011658707.1 - Cucumis sativus (cucumber) - NCBI

PREDICTED: Calliphora vicina uncharacterized LOC135961545 (LOC135961545), mRNA. (511 bp)

polyA_site 511 /gene="LOC135961545" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN // atgaaggtgtatatttctttattgatgcttgttttagcattatttgtcccacttaataaagcggtattaaacgatgttcacgatgctattggatggtcaaatgtggatttgaaaaatttccaatattttaaaaacttgccatcgcaagacccaaaaagagcagcacaagccaatctcttcttggaacattttcaaaagaaaaaagcagttttagattatttcgaaaatttatttttgggcaattcaccattcacacaagagagtgaaattccatttaatcctcactttggtcgagcgtggcgtccttattatgtacgaaagtttggttggaaaggagaacgattaatcgatgctttgggcaaagggtaccccattaaacaattgaagcattttggagctatacctaaggactacggttccaagtattatcctagctaattatttcatataccatttagtcatcacatatttataaatatttaaaataaactatttatt...

position 171

XM_065513049.1 - Calliphora vicina (urban bluebottle blowfly) - NCBI

Necator americanus uncharacterized protein (RB195_014921), partial mRNA. (591 bp)

Zhan,B., Aroian,R.V., Pafco,B. and Schwarz,E.M. TITLE Direct Submission JOURNAL Submitted (21-AUG-2023) Molecular Biology and Genetics, Cornell University, Biotechnology Bldg., 526 Campus Road, Ithaca, NY 14853, USA atggtcgtcggctatacagtcatagtcatcagcgtttaccgtaatcgtagaattcatggcgctatccagcaaagacaatctcttcttgatgctcgacttgcattccaatttatcgttatatgcctctctcaatacctcgctgcattgctcttctacattgttccgaagatgagcgcaggtgctgactggggagttctggtcacaaacagtattgttatggaacaacagacatctcaaaagtcgctgccgtcagtgtcaacgcttctgtttcgcgacattttgtggtccggtaacggtcgcagcggttgtgatgctgagctgcagttaggaaagctttctggtttcactcccgaaaaagtggagctcattgtgctccacattcat...

position 76

Synonym: Necator_chrV.g19713
XM_064205394.1 - Necator americanus (New World hookworm) - NCBI

Puccinia striiformis f. sp. tritici uncharacterized protein (Pst134EA_002690), partial mRNA. (597 bp)

ggcacacatcttcaacgacaccaagttcttcagtcaacttgagctcggcaatcacgatgttatccagacggggaagaaagacgcaactctccccatcgaaggcactggaagggtaaccttacaatggagcacctctacagttttgctagacaactgcctctacgttccagatattgtaatcaatctcattagtgctggtgctctgctagaaaaaggttgccaaatcgttgcaaagaaaggtagctttactgtctccaaagaacagcaagatctcttcaaaggctccatcgatagcaatctcttcttggtcgataatttgtatgcaatcatctaa

position 558

XM_047941149.1 - Puccinia striiformis f. sp. tritici - NCBI

PREDICTED: Musca domestica protein sisterless A-like (LOC131802227), mRNA. (600 bp)

db_xref="GeneID:131802227" /translation="MEQYNASRSTNLFLDPLYTSLTQELSLESLGPTTISSTQLNPQNIDQIVEMEMKRIQENIARKEAQYVEQMLVENPITFERRNNVTVLRKATSDSSLSPEQQRLQQQRADACRRSRYNNKVKKAKSKYRHKYISQKLQQSSQMLNCIKDLIVEAESHLLAQGLHKEKLHQLRSNYGIERPVNIGRVDVNAVDFVMPTEP" ORIGIN // atggaacaatataacgccagccgctcaaccaatctcttcttggacccactctacacatcgctgacgcaagaattgtcattggaaagtttgggaccgacaacgatttcatctacccaactaaatccacaaaacatcgatcaaattgtcgaaatggaaatgaaacgcattcaggagaacatcgcccgcaaagaggcacagtatgtggaacaaatgttggtcgaaaatccaattacatttgaaagacgcaacaacgtcactgtgctaagaaaggcaacctcggacagctcattatcacccgaacaacaacggctgcagcaacaacgtgccgatgcatgtcgacgttctcgc...

position 30

XM_059122010.1 - Musca domestica (house fly) - NCBI

PREDICTED: Musca domestica protein sisterless A-like (LOC101890048), mRNA. (600 bp)

db_xref="GeneID:101890048" /translation="MEQYNSSRSTNLFLDPLYTSLTQELSLESLGPTTISSTQLNPQNIDQIVEMEMKRIQENIARKEAQYVEQMLVENPITFERRNNVTVLRKATSDSSLSPEQQRLQQQRADACRRSRYNNKVKKAKSKYRHKYISQKLQQSSQMLNCIKDLIAEAESHLLAQGLHKEKLHQLRSNYGIERPANIVRVDVNAVDFVLPTEP" ORIGIN // atggaacaatataactccagccgctcaaccaatctcttcttggaccccctctacacatcgctgacacaagaattgtcattggaaagtttgggaccgacaacgatttcatcgacccaactaaatccgcaaaacatcgatcaaattgtcgaaatggaaatgaaacgcattcaggagaacatcgcccgtaaagaggcacagtatgtggaacaaatgttggtcgaaaatccaattacatttgaaagacgcaacaacgtcactgtgctaagaaaggcaacctcggacagctcattatcacccgaacaacaacggttgcagcagcaacgtgccgatgcatgtcgacgttctcgc...

position 30

XM_005187320.4 - Musca domestica (house fly) - NCBI

PREDICTED: Syngnathus acus prefoldin 5 (pfdn5), mRNA. (612 bp)

gttttagtcgatgtgggaacaggatattatgttgaaaagaatgtagcagattccaaggcattcttcaaacgaaaactagatttcctgacaaagcaaattgagaaaattcagcccgcccttcaggaaaaacatgccatgaaacaagctgtcattgaagtcatgaatgtgaagatccaacagctacaacagagtaaacaggcttccagcaccaaggcttaattgtgacaacacttaaatgaatgctttttgtgtgtgtgaaaaagaactgtaaaatgtcctgcactgacctttatacaatctcttcttgcataatttggaaataaagggttagtgaacattaa

position 566

XM_037252075.1 - Syngnathus acus (greater pipefish) - NCBI

Aspergillus costaricaensis CBS 115574 hypothetical protein (BO79DRAFT_277183), partial mRNA. (511 bp)

Creek, CA 94598-1698, USA atggatttccgcaacctatcattcactctcctcctgctatccgctacagtcatgttatatttcaggactctactagcgcatcccatctacatgattagcacccctgcatcagtgcaaactccagactcagcgccaaccgacgccctcgccttcctcgacgagcccgtcttcagaccactggcatctcacatagcggacaacccatatccgtggcgtgataaacgtccattccaggagaccaattttgcgttactcatgggtgctgtccaatctcttcttgaggctgaggttgacgagggagagggtggtgtgagtttgaatgagagctatgggcaacaggatggcattgagagtaactcgtccgagacatattttctctgggctggggaagatgagaagtggtcttgcgcttagcaaaagcgctcagaggagttgagaaagtgaagatggtccttcgagacctgggattgtgagaagttcatttttggaaagtgggtttaaaacccactat

position 268

XM_025687799.1 - Aspergillus costaricaensis CBS 115574 - NCBI

Arabidopsis thaliana uncharacterized protein (AT2G02795), mRNA. (687 bp)

ttgtctccaccattctcaaagaacttgcttttagggttcttgccattctcctgctgtatttcaatcttggtgtataagattacatcactgctcaccaccacgagcctgctcgacgtgctgctggttgggcagcagataagcatcttgttcatgtgcatttgcggggtctctgcttttatgggattattcaattatatccaccggctctctgttggggtcttgaatgagccgcccaagcccaacgaagctatgacatccttgctcaatgcaatgaagaatgagcaagaaagtacacaatctcttcttgctgcagcaatgattttggctgtgactgagcctgagaatccaagcatcctcacgttggttaacgcattgaaagaacgttatgctaccgctccttccatttaacacttgaaacacccaatgtttgcttctgtttatgtattttcttctatctagttgactttttggatttttgtttcttaggattattgtgtttcaatcctttgactcttttcggatttgtggttttatttatgaatttgtgtttcttaggagtctcttgcgtttaacctatgtatgtctctg

position 394

NM_001335146.1 - Arabidopsis thaliana (thale cress) - NCBI - TAIR

Data Export:

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Debug Info:

0.000 | 0.000 | search_start;
0.075 | 0.075 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?to=0&format=json
0.295 | 0.220 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=(nt:caatctcttcttg)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.302 | 0.007 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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Results:

Data Export:

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