GGRNA | Results

Matches are highlighted with green background. Overlapping matches are dark colored.

PREDICTED: Ciona intestinalis claudin-7-like (LOC100178438), mRNA. (1024 bp)

samples with support for all annotated introns" /db_xref="GeneID:100178438" CDS 206..667 /gene="LOC100178438" /codon_start=1 /product="claudin-7-like" /protein_id="XP_002130780.1" /db_xref="GeneID:100178438" /translation="MVNKCLLISGILLWCVAGGAYLASMLTKYWTHTIGTHSNLFEICVISLCNTQGWKGVGIQLLVPRILMLVGAFFVVLGAFVGLFEICCDKRRRCLLSDGVLTMFGGLVILAACAVYTALNFADYVIFGYSFYLGWVSGAVYILTGALLGCAGK" misc_feature 221..649 /gene="LOC100178438" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002130744.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-18-like (LOC100184472), mRNA. (808 bp)

with support for all annotated introns" /db_xref="GeneID:100184472" CDS 166..696 /gene="LOC100184472" /codon_start=1 /product="claudin-18-like" /protein_id="XP_002124078.1" /db_xref="GeneID:100184472" /translation="MDIKNICCFALLSVLALAFDIVAIGTKSWAVTEGPSKVGLFLICIDRRCASVLGRPIQFFVPLKAVTILLIISLLGIIISVALALCSLLKYIPKLLTTASILLLLSGFSALCGTAIFTVGMYIARNDVFMNAIFGNSKFGFSFAFAWACSGIAIVGGIFGLLIHKAKCKERTDTVR" misc_feature <457..642 /gene="LOC100184472" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002124042.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1-like (LOC100179431), transcript variant X2, mRNA. (736 bp)

introns" /db_xref="GeneID:100179431" CDS 77..727 /gene="LOC100179431" /codon_start=1 /product="claudin-1-like isoform X2" /protein_id="XP_026692138.1" /db_xref="GeneID:100179431" /translation="MANACPSVGLALGILSTIGILYSLASKEWKRNSQNSSQNVNRGIYSYEGLWVRCTSPMPGQFQCDNYDESFLALPASLQAQRAMMCIAAIAAVAGIVAGALGLQCIKVMEGSNAKVHTGRAGGGLMFLAGALCIASVSWYAANIVFEFWSFASINDPFKYEFGSALYVGWIAGGCALISGALMACCNCGNEETDSYPAYTYKPPKASGGGNNTEYV" misc_feature <203..622 /gene="LOC100179431" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026836337.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-18 (LOC100179400), mRNA. (1233 bp)

for all annotated introns" /db_xref="GeneID:100179400" CDS 64..708 /gene="LOC100179400" /codon_start=1 /product="claudin-18" /protein_id="XP_002131091.1" /db_xref="GeneID:100179400" /translation="MASGLHIAVCILYVIAFILEVVTVFLPYWKRNDLEDTLNDSIVRHEGLWIRCQTFATGNWDCDDFNRFFLGLPTELQAARGFSLSSLFISFIGICLAVAATVLSVKSLQNKLTIASGGASMLAGLLIIAAVSWYANDIRIQHEYLTRLRLTGGSGTRYTFGYALFLGWVGGALQVVGSIMALCISCGNSDEEDIPPTYRYHPTKSTLAPSQEYV" misc_feature 82..606 /gene="LOC100179400" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002131055.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1-like (LOC100179431), transcript variant X1, mRNA. (734 bp)

introns" /db_xref="GeneID:100179431" CDS 75..725 /gene="LOC100179431" /codon_start=1 /product="claudin-1-like isoform X1" /protein_id="XP_026692137.1" /db_xref="GeneID:100179431" /translation="MANACPSVGLALGILSTIGILYSLASKEWKRNSQNSSQNVNRGIYSYEGLWVRCTSPMPGQFQCDNYDESFLALPASLQAQRAMMCIAAIAAVAGIVAGALGLQCIKVMEGSNAKVHTGRAGGGLMFLAGALTIAAVSWYAADVVYQFHVEVITNQSFTYEFGSALYVGWIAGGCALISGALMACCNCGNEETDSYPAYTYKPPKASGGGNNTEYV" misc_feature <201..620 /gene="LOC100179431" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026836336.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-7 (LOC100183075), mRNA. (1349 bp)

for all annotated introns" /db_xref="GeneID:100183075" CDS 71..718 /gene="LOC100183075" /codon_start=1 /product="claudin-7" /protein_id="XP_002129997.1" /db_xref="GeneID:100183075" /translation="MVNGGLQIGGFLLGLIGWILGIVTCALPDWRKNDLQGEVIESVIRTTGLWVRCTTQATGLWTCDDYDSFFLGLPVALQAARACVCLSIAMGFLSCICSVFGLECTNISAGNPKMKARITLVAGLLNFIGGVSVGIAVSWFAANVLQEYWNPLGAATSNTRYVYGSALFVGWISMAVSVIAGLVQCCSSWNVDDEDNGRPYTYNPSKPKASSAEYI" misc_feature 83..616 /gene="LOC100183075" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002129961.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1 (LOC100176302), mRNA. (1077 bp)

all annotated introns" /db_xref="GeneID:100176302" CDS 71..736 /gene="LOC100176302" /codon_start=1 /product="claudin-1" /protein_id="XP_002130616.1" /db_xref="GeneID:100176302" /translation="MGSAAIEVTSLILFTIGTILGVVSVAIPYWKKNDPEDTIRDSIVRHEGLWIKCQTFNTGNWDCDDFNRFFLGLPTELQAARGFGITSIVFGILAIIAMVLGMDSLPCGGDVKGLKKRVRLIGGSIGFLSGLLLIAAVSWYANDIRIAHEFASQQLLLNSSTTITRYIFGEALFIGWIAGALLVLGGILAMCTGCGGESYDDAPRNYVYRPPKSAGNSQEYV" misc_feature 98..637 /gene="LOC100176302" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002130580.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-17-like (LOC100186735), mRNA. (996 bp)

all annotated introns" /db_xref="GeneID:100186735" CDS 50..688 /gene="LOC100186735" /codon_start=1 /product="claudin-17-like" /protein_id="XP_002125946.1" /db_xref="GeneID:100186735" /translation="MGLGGCEAFGIVLSLVGTALLLTAQLLAPWKTVGDTWIGIWRDCNVGRLDQCGGLTDWLKRIDVTAARGCFIAADVLFLISLILMLFAICADKKGGLITAKGGLEITAGIIILAGCGAFTALNLVDLGAISDIGLFGLELRRDFGYAFYLGWASGGVVFISGICLVVGGNQRSKKEKASNSLPVVMIPQYGPPKDVNVNTVSRNQVAPVTFG" misc_feature <155..538 /gene="LOC100186735" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002125910.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19-like (LOC100180326), transcript variant X2, mRNA. (804 bp)

annotated introns" /db_xref="GeneID:100180326" CDS 22..657 /gene="LOC100180326" /codon_start=1 /product="claudin-19-like isoform X2" /protein_id="XP_018672121.1" /db_xref="GeneID:100180326" /translation="MSKSVLQAVGWVFSLGCCGATIGVTLSHKWKKNTVEGIHHSVLDSVSNVAGLWDFCQVFPSGQTQCWPIAATSVPALLLFCRILMIFGILLGCVAGFLTICSFKCTTLGPEARHAREKLSLYCGLMNLLSGICVVVATSSYIYETLNTPPSVDPRGQSVMNEVSEAAQISLAFSIIWCLASVVMIAGSTTTAEPKVKYHYPTKPIPMQEYV" misc_feature 28..>447 /gene="LOC100180326" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018816576.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1 (LOC100176657), mRNA. (1245 bp)

annotated introns" /db_xref="GeneID:100176657" CDS 63..761 /gene="LOC100176657" /codon_start=1 /product="claudin-1" /protein_id="XP_002120514.1" /db_xref="GeneID:100176657" /translation="MANSSLQAVGLVLSVIAAVCTTLAVILPEWRKNDPKGEVIEAVVRHQGIWLRCTSYSTGIWQCDDFDAFFLGLPAQLQVARGLALCSVVFGFFGIMLSIFGMECTRCIENNPKTKTRIALIASGFFIASALSIGIAVSYYASQVAQEYTASSILLVNDLGQRYVFGSSLFLGWAAMAIGVLGGAVMMCGSFYVDKEEDEYWNKGRVGRGVRRMRSSFRQSFRPRVTKDADYV" misc_feature 72..611 /gene="LOC100176657" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002120478.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19 (LOC100179981), transcript variant X1, mRNA. (965 bp)

introns" /db_xref="GeneID:100179981" CDS 32..712 /gene="LOC100179981" /codon_start=1 /product="claudin-1 isoform X1" /protein_id="XP_018667766.1" /db_xref="GeneID:100179981" /translation="MECQMICFVVGFLATTGCVFCTFWNEWAVSSPSASAPVLGPIWAFSGLWSECMQYSTGQYQCNGFGMMKLPSYILAIRAMMCIALSLSVIGCFVTLIGMECSKLLDGNLSAKRNLMRISGVLFLVAGVLTLASVSWYTGVVVEDFFSVFTQDNMIIYEMGAALYLGFVSSALALLTAILCFCMPGPKPEDEDSPPYKYTPTGYTVREPYETKVQIPKSKDKYSEYV" misc_feature 32..568 /gene="LOC100179981" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018812221.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1-like (LOC100179431), transcript variant X3, mRNA. (840 bp)

introns" /db_xref="GeneID:100179431" CDS 184..831 /gene="LOC100179431" /codon_start=1 /product="claudin-1-like isoform X3" /protein_id="XP_009859999.1" /db_xref="GeneID:100179431" /translation="MSGSISYLGLVLTLISTIGIIFTTIYREWKRNSVQASQQVLDRLYSCEGLWVRCTSPTPGQFQCDDYDTALLGLPPALQGMRAMMCISVLFIIVAVVCSIVSLPCTAALAEKQKLYASRVAGICAMLAGALCIASVSWYAANIVFEFWSFASINDPFKYEFGSALYVGWIAGGCALISGALMACCNCGNEETDSYPAYTYKPPKASGGGNNTEYV" misc_feature 205..726 /gene="LOC100179431" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_009861697.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19 (LOC100179981), transcript variant X3, mRNA. (1020 bp)

introns" /db_xref="GeneID:100179981" CDS 87..767 /gene="LOC100179981" /codon_start=1 /product="claudin-19 isoform X3" /protein_id="XP_002128486.1" /db_xref="GeneID:100179981" /translation="MYHQLCSFICAFTSTALIATTLTWNMWAVNGPTSSSVLGAAFAWRGIWADCMQAYGGQYHCEEMGSMFETAGYILAIRAMMCIALSLSVIGCFVTLIGMECSKLLDGNLSAKRNLMRISGVLFLVAGVLTLASVSWYTGVVVEDFFSVFTQDNMIIYEMGAALYLGFVSSALALLTAILCFCMPGPKPEDEDSPPYKYTPTGYTVREPYETKVQIPKSKDKYSEYV" misc_feature 87..623 /gene="LOC100179981" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002128450.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-7-like (LOC100177737), transcript variant X2, mRNA. (1041 bp)

introns" /db_xref="GeneID:100177737" CDS 225..923 /gene="LOC100177737" /codon_start=1 /product="claudin-7-like isoform X2" /protein_id="XP_018672567.1" /db_xref="GeneID:100177737" /translation="MASSALQVFGFTLGVLAWVGMIGTCASPEWRKNSHGQTLIDNTLKYEGLWVSCTAFVTGQTNCKDYAEFFVNLPQVLQICRALMISSIGTGFVAIIITVLGMKCVGLGSSNHIVKARIALLGGLLFGISGFGTAAASYCAYLWSTKDGYTVMSGFYVVVATACAGMLSSLLVIMGSCCASLPVDEIGHSVPARTFSFRKRKNEEKVSRYFGCQQTVAKNFGSRNPVYVADFV" misc_feature 234..>554 /gene="LOC100177737" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018817022.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19-like (LOC100180326), transcript variant X1, mRNA. (1153 bp)

introns" /db_xref="GeneID:100180326" CDS 371..1006 /gene="LOC100180326" /codon_start=1 /product="claudin-19-like isoform X1" /protein_id="XP_002131512.1" /db_xref="GeneID:100180326" /translation="MSKSVLQAVGWVFSLGCCGATIGVTLSHKWKKNTVEGIHHSVLDSVSNVAGLWDFCQVFPSGQTQCWPIAATSVPALLLFCRILMIFGILLGCVAGFLTICSFKCTTLGPEARHAREKLSLYCGLMNLLSGICVVVATSSYIYETLNTPPSVDPRGQSVMNEVSEAAQISLAFSIIWCLASVVMIAGSTTTAEPKVKYHYPTKPIPMQEYV" misc_feature 377..>796 /gene="LOC100180326" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002131476.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19 (LOC100179981), transcript variant X2, mRNA. (1000 bp)

introns" /db_xref="GeneID:100179981" CDS 72..752 /gene="LOC100179981" /codon_start=1 /product="claudin-19 isoform X2" /protein_id="XP_002128468.1" /db_xref="GeneID:100179981" /translation="MYGQILIFVLAFVSTSLITTTTVWNQWAVNGPTSSSVLTAIWAWRGIWGDCMQMYGGQYQCEEMQSMLNEKGYILAIRAMMCIALSLSVIGCFVTLIGMECSKLLDGNLSAKRNLMRISGVLFLVAGVLTLASVSWYTGVVVEDFFSVFTQDNMIIYEMGAALYLGFVSSALALLTAILCFCMPGPKPEDEDSPPYKYTPTGYTVREPYETKVQIPKSKDKYSEYV" misc_feature 72..608 /gene="LOC100179981" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002128432.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin domain-containing protein 1 (LOC100182489), mRNA. (1824 bp)

introns" /db_xref="GeneID:100182489" CDS 134..763 /gene="LOC100182489" /codon_start=1 /product="claudin domain-containing protein 1" /protein_id="XP_002119328.1" /db_xref="GeneID:100182489" /translation="MKRICCFGFACVVGLLGLASAVIALATNYWFLVETSTDNTTAIDVVSMYQYPYRVGIWLTCYEDKIPDSVNPEKLISGQCVLDYDFQLQRTEDFARTSAVSLVLACGIMFVASIMGLTGCICRRSTPILISGLFTYVSGICTLVAMCSFIGRIVTGQSDLKPYDNISTKFGWSFFLGWVSLALQVVSASLLVGGAKGCGSTMKSGNNFA" misc_feature 176..712 /gene="LOC100182489" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002119292.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-19-like (LOC104266185), mRNA. (1230 bp)

gene="LOC104266185" /codon_start=1 /product="claudin-19-like" /protein_id="XP_009860118.1" /db_xref="GeneID:104266185" /translation="MGTHKMAANRHQFCFTIFLMLGVASTVMIFFILITPEWKTNSAVTSNSLKNFDMQRNRMGLWKVCMEYLWKVVGARKVCDQYDPALVGVPGYLRTIQVMMMMAISFSLGGVVCSLLGLKRVPLLSNKRKNKTILLAGVCHVFAGMITCVCVSRYAVEVTREYYAVPAYQLQVDARTLKYTFGTCLYVGWAASALAVITGCLMMLFYKRCRKQEECIETDSESAKDRTESKHIDPDYKRVRKTSLEKTPTPNSDFTKNDETHQSHPCSRCYHTKPTRSFSGTSGYYSMLSLFSNATQHSKISGNMVEICPLETNTKPLYQYVRISSKV" misc_feature 61..612 /gene="LOC104266185" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...

XM_009861816.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-7 (LOC100182324), mRNA. (1402 bp)

CDS 243..1151 /gene="LOC100182324" /codon_start=1 /product="claudin-7" /protein_id="XP_018669245.1" /db_xref="GeneID:100182324" /translation="MAISSCQIVGYLVGILTWLGALLVVTLPDWKHSYVSERSFSGVLVVRGLWTTCTVKESGSVECINISEPVFALPTLIKGCRTLSVLGTVLAFCAVAITPLGMRCTRIGGDAKTKLRIARCCAVLFGLAAILIGIAVSWYAEDVAKDFHNPLSLRKLPPVSDLKYVYGNALYIGWATMATGAISSTFLVVGSFPDAAAESENNNDNQTQQQKSLRPGSSYARLLKSDVTALQGPEQRTSSVSKERHYITVTTNGYGTTGAKARPTTVNGKAPTKQMSVAYGDGNTLPLSTRNNLQSQTNKTYV" misc_feature 261..767 /gene="LOC100182324" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018813700.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-7-like (LOC100177737), transcript variant X1, mRNA. (1537 bp)

db_xref="GeneID:100177737" CDS 210..947 /gene="LOC100177737" /codon_start=1 /product="claudin-7-like isoform X1" /protein_id="XP_018672566.1" /db_xref="GeneID:100177737" /translation="MASSALQVFGFTLGVLAWVGMIGTCASPEWRKNSHGQTLIDNTLKYEGLWVSCTAFVTGQTNCKDYAEFFVNLPQVLQICRALMISSIGTGFVAIIITVLGMKCVGLGSSNHIVKARIALLGGLLFGISGVLTGAAVSYYAQGVLQDYYNPSFAQGLTNVPSIRIWKCFVSWLGKSSTWYTLWCARMRLNDSHPSSSATTPSPLSRIYTDIDNAKNYRPQFAPTLRITIDATRKKPTATKTNTIF" misc_feature 219..662 /gene="LOC100177737" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018817021.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-16-like (LOC100186332), transcript variant X1, mRNA. (988 bp)

CDS 82..906 /gene="LOC100186332" /codon_start=1 /product="claudin-16-like isoform X1" /protein_id="XP_002119352.1" /db_xref="GeneID:100186332" /translation="MADYATDSASSVIAPLCKFAGFIFGLTAASCVVFVTVTPCWYVIYAEASISPYENCYGLWKFCSSTGLCGKWLSGSLLGSHGAQRTVCRGLMITACLLSGFALILNVMGMRCILLFRLLPRTKEKLTRRAAVVWIVAGTFVLISSTWYGLEVMYSVWDEGKASELSDGIFVGWGATAFAYAAAGLLWIGATVSRSERKEAEKRRDSILSTVAAAYAASRSGSGASTTCCCYLAPRLLGCGHECGHHSNTGDDKIRTLEPITECQVTSHARTTYM" misc_feature 139..>528 /gene="LOC100186332" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002119316.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-4-like (LOC100178949), transcript variant X2, mRNA. (1369 bp)

gene="LOC100178949" /codon_start=1 /product="claudin-4-like isoform X2" /protein_id="XP_026689573.1" /db_xref="GeneID:100178949" /translation="MIKNDPYDEEEERGPTSHTLRNISFALGSIACIMIIFCVAAPYWRTTSTWGSALVISNIWAFEGIFLTCVQSTGMQGDDQCYQMPTFAGYGTGGYGGASGINTAFAIGVYTYLNAFRALMIIGFIASLGGVVCSVLGMRCASVVDEESKAKRWIVIIGGLCHIAAGVLTGICVSWYAAEVVWEYYSPYYQTQKLKYTLGACLYVGWIAMLFALVAGCLMTCCACCNKPADSTNTYSYNPAKLQAPNHSYPEPTVYRSEPVVEKAVYDHRPDYYRSSSKSKRSKYSNRRDEHSSSGSSSRSNSPSRHSRSHKSRSSRHASDSIRASGFV" misc_feature <438..764 /gene="LOC100178949" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="...

XM_026833772.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-4-like (LOC100178949), transcript variant X4, mRNA. (1535 bp)

CDS 373..1263 /gene="LOC100178949" /codon_start=1 /product="claudin-4-like isoform X4" /protein_id="XP_002131973.1" /db_xref="GeneID:100178949" /translation="MAAVSYGLINISAVLGVLSSLMMLIILILPEWRINSVVASEINMSMVRAREGIWIRCVSYSNAYWNCDTFDVSLIGLPAYLNAFRALMIIGFIASLGGVVCSVLGMRCASVVDEESKAKRWIVIIGGLCHIAAGVLTGICVSWYAAEVVWEYYSPYYQTQKLKYTLGACLYVGWIAMLFALVAGCLMTCCACCNKPADSTNTYSYNPAKLQAPNHSYPEPTVYRSEPVVEKAVYDHRPDYYRSSSKSKRSKYSNRRDEHSSSGSSSRSNSPSRHSRSHKSRSSRHASDSIRASGFV" misc_feature 391..930 /gene="LOC100178949" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN...

XM_002131937.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-4-like (LOC100178949), transcript variant X3, mRNA. (1220 bp)

CDS 40..948 /gene="LOC100178949" /codon_start=1 /product="claudin-1-like isoform X3" /protein_id="XP_009862221.1" /db_xref="GeneID:100178949" /translation="MDNLLVQKLQQLMAVIGGISSIMIAFVLAAPFWKQTLSQDSLQIYNTLYGFQGMWMNCLFSAGRIQCIQVGLVPSFYSNGSDVYAYLNAFRALMIIGFIASLGGVVCSVLGMRCASVVDEESKAKRWIVIIGGLCHIAAGVLTGICVSWYAAEVVWEYYSPYYQTQKLKYTLGACLYVGWIAMLFALVAGCLMTCCACCNKPADSTNTYSYNPAKLQAPNHSYPEPTVYRSEPVVEKAVYDHRPDYYRSSSKSKRSKYSNRRDEHSSSGSSSRSNSPSRHSRSHKSRSSRHASDSIRASGFV" misc_feature <190..615 /gene="LOC100178949" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919"...

XM_009863919.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-4-like (LOC100178949), transcript variant X1, mRNA. (1396 bp)

gene="LOC100178949" /codon_start=1 /product="claudin-15-like isoform X1" /protein_id="XP_004225520.2" /db_xref="GeneID:100178949" /translation="MPNYNNQNYPNDPYDNDRAAGVPSNGIRTASTCLAFLSLVMFAFVLGAPYWRTTANWGSVSAITNIWEFEGLFLTCVKSGGGQGTSQCYQMTAFMGAGTTSNGFNSGYVGTIYTYLNAFRALMIIGFIASLGGVVCSVLGMRCASVVDEESKAKRWIVIIGGLCHIAAGVLTGICVSWYAAEVVWEYYSPYYQTQKLKYTLGACLYVGWIAMLFALVAGCLMTCCACCNKPADSTNTYSYNPAKLQAPNHSYPEPTVYRSEPVVEKAVYDHRPDYYRSSSKSKRSKYSNRRDEHSSSGSSSRSNSPSRHSRSHKSRSSRHASDSIRASGFV" misc_feature 285..791 /gene="LOC100178949" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref...

XM_004225472.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-1-like (LOC108949837), mRNA. (812 bp)

LOCUS XM_018813689 812 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis claudin-1-like (LOC108949837), mRNA. ACCESSION XM_018813689 VERSION XM_018813689.2 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020175.2) annotated using gene prediction method: Gnomon. Also see: Documentation of...

XM_018813689.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-16-like (LOC100186332), transcript variant X2, mRNA. (904 bp)

LOCUS XM_026834694 904 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis claudin-16-like (LOC100186332), transcript variant X2, mRNA. ACCESSION XM_026834694 VERSION XM_026834694.1 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_020170.2) annotated using gene prediction method: Gnomon,...

XM_026834694.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis claudin-6-like (LOC100180428), mRNA. (853 bp)

LOCUS XM_002123142 853 bp mRNA linear INV 22-OCT-2018 DEFINITION PREDICTED: Ciona intestinalis claudin-6-like (LOC100180428), mRNA. ACCESSION XM_002123142 VERSION XM_002123142.3 DBLINK BioProject: PRJNA187185 KEYWORDS RefSeq. SOURCE Ciona intestinalis (vase tunicate) ORGANISM Ciona intestinalis Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Phlebobranchia; Cionidae; Ciona. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NW_004190363.2) annotated using gene prediction method: Gnomon, supported by EST...

XM_002123142.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100181662 (LOC100181662), mRNA. (822 bp)

db_xref="GeneID:100181662" /translation="MGYWTPSKIAASVLGALINGLFIPTMAVNGWIYSGIIGKGLYNTCGGGICTGTQWGQIAGEDATRIMYIIAAIVLGLKLFISIGYCVTKNHAPLMLGFGICEVAAGIIMFAGSITYVRTFAEAIADSNGGSAFGVAFYLSWFAAIISIIAGCFNIHVYSQCKNNSSEVNVEIS" misc_feature 131..523 /gene="LOC100181662" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026835247.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC108950049 (LOC108950049), mRNA. (956 bp)

id="XP_018670243.1" /db_xref="GeneID:108950049" /translation="MVKSTELAAVIMFAFNLAACASCLFTTGWFVYTKDGIYHQKGLFLSCLDGSCNIDIVSQTVVANVTLGLMSVSCLGMLLGLAWLLVGIVHEKRQIVKIGSAVYILAGIGSFAAVMVYTGQTLISKSSPPPFGYSYALGWVAGIGGIVSGTVGLLASKKTYDVI" misc_feature 376..807 /gene="LOC108950049" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018814698.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis epithelial membrane protein 2-like (LOC108949497), mRNA. (843 bp)

db_xref="GeneID:108949497" /translation="MSQSYNTIEEDEPIKPTNEQQKCSCPCLVAALAAVTVITINSVSLATPAWIQSYSVNAGLWHICYSGGCHDYTSVQAYIKVVRGFLISSIVFVTITTIWSLIGICRHKSNLRKIGQSLGILFFFACVANTVSAGVFTTWYPMETGQSFGYSYILTWVASGICFLSGIYSFAASY" misc_feature 277..696 /gene="LOC108949497" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_018811866.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100180805 (LOC100180805), mRNA. (715 bp)

protein_id="XP_002130740.1" /db_xref="GeneID:100180805" /translation="MANKPLVVTGFIFWLIATGMFLAAMLTKFWKSLLQQAFHFNLFENCVSSVCVQAGWDPSSVGLAMFVPRILMLVAAFFILLGVVIGLVGLCSDRNKCCMVAEGVLTIVGGIVALCACAVYTGLNHNSFINFGYSFYFGWVSGVGYIVAGALHAAGSK" misc_feature 102..527 /gene="LOC100180805" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002130704.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100180441 (LOC100180441), mRNA. (1226 bp)

id="XP_002120487.1" /db_xref="GeneID:100180441" /translation="MNASASAAILLSILGCADIIVATFAPGWLSTNVLGVTGSEGPLLVCISGTCRVIIQNRPASILAVFSLLCLATVTGIFGLVLLIIGGCCSSDRNMFSSGSASVLVSGIFALAGVATYTGVTAQAVQASSFLSYYYCFGMCWAGAFLSLMAAMLGFLGGKLL" misc_feature 139..573 /gene="LOC100180441" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002120451.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis epithelial membrane protein 2 (LOC100177389), mRNA. (772 bp)

id="XP_002132146.1" /db_xref="GeneID:100177389" /translation="MVCTKKIQIASAAIALIGFIFLLVAICTNYWITSDVESNSGLWRACSAGNCENLKIGSSRKYENYEMVRGFGVLAVCVCFLGIVLSLLSCVIRRVKIGPSVVATLYLMAAFFGLTSLALFTSIVNTKNSDVNRAWGYSFILGWFAFPLTLFPGVVMTYVELKMTN" misc_feature 107..526 /gene="LOC100177389" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002132110.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis lens fiber membrane intrinsic protein-like (LOC100184210), mRNA. (1123 bp)

protein_id="XP_002125056.1" /db_xref="GeneID:100184210" /translation="MKHYFGFVLFPGGTISLFLAVTSLATADWVNSGTVSMTSFGLWQECVDYTCFTLTDVPSYLNAVRAFLITSCVTSVASAILSLAISVGSKPRTAVDASMMLTYLASTILLATGMVVYTVEQPLPYPTRYGYSFVLGWLAVALCFVCSTVGIFAVIKSR" misc_feature 465..887 /gene="LOC100184210" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002125020.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis peripheral myelin protein 22-like (LOC100176521), mRNA. (1059 bp)

db_xref="GeneID:100176521" /translation="MGCECYQQSPYQIAGSVLSGIVTGLFIPAMTVVGWHHTSFATFGLYRSCFTYFTKQCIGTVWNLVPGLDAARILFIIAACILGLKLFISFGFCITKKYGPLILALGVCDLVGGLVILSGCIAYIVTFAPIVRSSANDASFGVAFYLGWFAGPFSVAAGICNIYAGKLIGQQQCGVNVSHKA" misc_feature 165..593 /gene="LOC100176521" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002127223.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC101243042 (LOC101243042), mRNA. (598 bp)

db_xref="GeneID:101243042" /translation="MCIISCVIGLTVLVFEILVTATNGWLNVSIKYGSQTDKFTIGAFDLTGIDQKTSRSWNINKNSAITTLQAMLILSIISLIVGIVCQILALTKLKLGRLETKGFLILVHVMYMLSAIFLIIGLSVYTNYWNSHALFFAINNIRFLGTTSYNYSFYLCWLIALPFMIFSIAYAVYATFMVKTK" misc_feature <209..511 /gene="LOC101243042" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_009862716.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis transmembrane protein 47-like (LOC100183468), mRNA. (1544 bp)

translation="MGKEVIIEISWLRPLKLIGLANLLCGIIVFIIAMILEDWVVSDENENFQFYMSLWKKCKKIPPPEVEREEGVEAEWECLEATALGVYMSVVQALIVIPFVASIISFIIGIVAYCKREWRFLYKIAAIILIIAAVAVLVGVILFPIMFINNLPFSAFFWFGWGYGVSWAAFCFILCAAVLFLISQDKKEIYHTQKTMKL" misc_feature 255..728 /gene="LOC100183468" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002119305.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100183788 (LOC100183788), transcript variant X2, mRNA. (858 bp)

db_xref="GeneID:100183788" /translation="MFLHSQDYLLGNMNRGTFFATTGFFIGIAGLSFAIIALATTRWRWDTSTGRQNGLFESCLIGGREFCITSTTRYEPYVQATQAFLIMGCICSFLGLIVNLLNACGKGTSKCHLYAGILYILSGVFLLVACAVYTGESRPKLAAVEVFGYSLWLAWASLIIHLLVVPFAFLSKDRKFEYV" misc_feature 84..509 /gene="LOC100183788" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_009864086.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100183788 (LOC100183788), transcript variant X1, mRNA. (855 bp)

db_xref="GeneID:100183788" /translation="MFLHSQDYLLGNMNRGTFFATTGFFIGIAGLSFAIIALATTRWRWDTSTGRQNGLFESCLIGGREFCITSTTRYEPYVQATQAFLIMGCICSFLGLIVNLLNACGKGTSKCHLYAGILYILSGVFLLVACAVYTGESRPKLAAVEVFGYSLWLAWASLIIHLLVVPFAFLSKDRKFEYV" misc_feature 81..506 /gene="LOC100183788" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002130646.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC104265840 (LOC104265840), mRNA. (897 bp)

xref="GeneID:104265840" /translation="MVTMNMVLPHITSLGALGCLVTIITAFATPDWAYNPEIDFRTGLHIYCNGTRCYGYGKEDKYGWFAAVHAFMWICIFTFFFALVFNTTYSYYTLKNGDDINALGMAHALVFTVAGIPGIIAMAIFSSFCHSPKIYGYSYWLGWTACLLCYTIVALILASCTRRYKRLKTKPKHICGIYRSDVISDHLNIN" misc_feature 358..771 /gene="LOC104265840" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_009860782.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100184513 (LOC100184513), mRNA. (1305 bp)

MEFEHLCYISCLVGVVSLIFDIFVTATSGWLNISVEYQNKKLHFTVGAFDLYDVDEKNNMAIKVVQNEGITTLQAMLVLSILALVFAIICQGLVVAKKQVLIFGPRGLLIMVEFLYILTGFFLLVGLSVYTHYWSSNKLYYVSAQHPMKTSYNYSYYLCWVFTIIFTLYSVAFTVYMNLMVKISYRSRSSAANTSNTLPEKDETTAPYDLPDSSV" misc_feature <311..580 /gene="LOC100184513" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002127944.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100185208 (LOC100185208), transcript variant X1, mRNA. (931 bp)

MSRLKLGLSVSSLVLVIVSTSILFAAFFTSKWLTNTPVNNATIYLNYGLWDNGLQNLNCDVTPFSICMYTRAGVFASMVLVVPAFLMSMISTAIVASGGNIGTSATLARSAAVISTIAAICLFIGVLLYTIQHTTCITLCPPTYNYYSEKTKDLHFNFSFYFAWVALPLLIVSLTFQFIFASLIARETKEGMSATEDIHMHPIEERYDISKKKSNGV" misc_feature 114..596 /gene="LOC100185208" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_002127623.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100185208 (LOC100185208), transcript variant X2, mRNA. (1117 bp)

XM_018811495.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC113474605 (LOC113474605), mRNA. (2414 bp)

misc_feature <345..749 /gene="LOC113474605" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026836351.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100184466 (LOC100184466), transcript variant X2, mRNA. (2464 bp)

misc_feature 847..1179 /gene="LOC100184466" /note="Zinc-binding domain; Region: zf-3CxxC; pfam13695" /db_xref="CDD:463958" misc_feature <1810..2226 /gene="LOC100184466" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026834493.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100184466 (LOC100184466), transcript variant X1, mRNA. (2633 bp)

misc_feature 847..1179 /gene="LOC100184466" /note="Zinc-binding domain; Region: zf-3CxxC; pfam13695" /db_xref="CDD:463958" misc_feature <1810..2202 /gene="LOC100184466" /note="PMP-22/EMP/MP20/Claudin family; Region: PMP22_Claudin; cl21598" /db_xref="CDD:473919" ORIGIN //...

XM_026834492.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

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0.000 | 0.000 | search_start;
0.295 | 0.295 | count_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.363 | 0.068 | search_done; http://172.18.8.71:7700/v1/refsub/query?q=((full_search:*:claudin)%7C(nt:claudin)%7C(aa:claudin))?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.368 | 0.005 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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