GGRNA | Results

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Ciona intestinalis uncharacterized LOC100178878 (gnrh1), mRNA. (1087 bp)

misc_feature 11..13 /gene="gnrh1" /note="upstream_AUG_codon; putative N-terminal extension: MGFIKYLYLFACISYSAIAYPTSQ" CDS 83..742 /gene="gnrh1" /codon_start=1 /product="preprogonadotropin-releasing hormone 1" /protein_id="NP_001027799.2" /db_xref="GeneID:100178878" /translation="MLDIEKDELAALLQRENSAFRDILYHKNAGSFEKSDSGKFDSLKLQNNFPHLDLGLGVDLDAVDQWNRYKQANAQRMQNLGVPVNARQHWSYEFMPGGRRAVWENANVGVPVSRQHWSYEYMPGGRRSAGQHAMTKRQHWSKGYSPGGKRSVDLSEFDDQGRRITKHEGMPEEPFKVEQPRPRNGIHGPAGLDQNEPDWKNWMNEQPAASSDDKGSDVE" ORIGIN // REFERENCE 1 (bases 1 to 1087) AUTHORS Adams BA, Tello JA, Erchegyi J, Warby C, Hong DJ,...

AA_position 6

NM_001032627.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis COMM domain-containing protein 8-like (LOC144745962), mRNA. (452 bp)

genomic feature by RNAseq alignments" /db_xref="GeneID:144745962" CDS 90..335 /gene="LOC144745962" /codon_start=1 /product="COMM domain-containing protein 8-like" /protein_id="XP_078488383.1" /db_xref="GeneID:144745962" /translation="MNGNEAASGHLKDFDWQLNLVLSSDKLSSLNQPLVKVDLDIQPDQKSPETKTTSIEMNKDELKILINALEGANKALEQAKS" polyA_site 452 /gene="LOC144745962" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 59

XM_078632257.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100177459 (LOC100177459), mRNA. (881 bp)

coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:100177459" CDS 381..743 /gene="LOC100177459" /codon_start=1 /product="uncharacterized protein LOC100177459" /protein_id="XP_026691177.2" /db_xref="GeneID:100177459" /translation="MSMNMSLRFEVANRGGSLINSLKVEKERIMKDELMAERILQVTTEEDVNLKAGWSEGLEEASQAQRYRLNKEEIKHELSYANKAVVAVRRAALRELLEREHDMYEQELHKIGKAFYIKRT" polyA_site 881 /gene="LOC100177459" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 31

XM_026835376.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis large ribosomal subunit protein uL29 (LOC100179536), mRNA. (657 bp)

by RNAseq alignments, including 101 samples with support for all annotated introns" /db_xref="GeneID:100179536" CDS 259..630 /gene="LOC100179536" /codon_start=1 /product="large ribosomal subunit protein uL29" /protein_id="XP_002131705.2" /db_xref="GeneID:100179536" /translation="MARIKAKELRGKSKDELLKQLNDFKQELSTLRVAKVTGGAASKLSKICLVRKSIARVLTVINQTQKDNLRKLFKGKKHKPKDLRPKKTRALRRRLNKNEECLKSVKALKKARLYPQRQFAIKA" polyA_site 657 /gene="LOC100179536" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 14

XM_002131669.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100179681 (LOC100179681), mRNA. (556 bp)

samples with support for all annotated introns" /db_xref="GeneID:100179681" CDS 26..397 /gene="LOC100179681" /codon_start=1 /product="uncharacterized protein LOC100179681" /protein_id="XP_002128134.2" /db_xref="GeneID:100179681" /translation="MGAVDAQVRLELQKEFDEIQKIQKEIQKSAELQKKLDSQLNQNTVVKDELEFLEPESNVYKLTGPVLVKQDLGEAKGTVSKRIEYISAEVKRQETLVADLEKQLNKHKESVSKIQAKATAVAH" polyA_site 556 /gene="LOC100179681" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 47

XM_002128098.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), mRNA. (1775 bp)

db_xref="GeneID:494417" /translation="MPARLKWTDEYMKENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDPLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPEFKEVPWYYANVSAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFEAQTMGNADPFELKDELEMKCKHAEGKLTLEMFEEDMISGLDVEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPENIGYYDCSQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAQWIFETLDSDNDGRCTVAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL" misc_feature 213..824 /gene="mina53-like1" /note="Cupin-like domain; Region: Cupin_8; pfam13621" /db_xref="CDD...

AA_position 247

NM_001032656.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

Ciona intestinalis transcription factor protein (LOC778757), mRNA. (1113 bp)

gene="LOC778757" /note="upstream in-frame stop codon" CDS 50..535 /gene="LOC778757" /codon_start=1 /product="transcription factor protein" /protein_id="NP_001071818.1" /db_xref="GeneID:778757" /translation="MTDDKKEKYFSQQSKIQSGQSVIFSDEELLNLSVRDLNRHLRSLSPEESRRLKQRRRTLKNRGYAASCRIKRLTQKDELDIERIQLQNEVDRVTQENQRMKLELEAFQKKFHDLEQFAKSIGKGNSSYTGDGNVPTLLQVMRPPTTQQNGDSANTESNMIS" misc_feature 185..394 /gene="LOC778757" /note="Basic leucine zipper (bZIP) domain of small musculoaponeurotic fibrosarcoma (Maf) proteins: a DNA-binding and dimerization domain; Region: bZIP_Maf_small; cd14717" /db_xref="CDD...

AA_position 76

NM_001078350.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis transcription factor protein (LOC778757), mRNA. (1304 bp)

with support for all annotated introns" /db_xref="GeneID:778757" CDS 238..738 /gene="LOC778757" /codon_start=1 /product="transcription factor protein" /protein_id="XP_078492853.1" /db_xref="GeneID:778757" /translation="MDMTDDKKEKYFSQQNKIQGGQSVIFSDEELLNLSVRDLNRHLRSLSPEQSRRLKQRRRTLKNRGYAASCRIKRLTQKDELDIERIQLQNEVDRVTQENQRMKLELEAFQKKFHDLEQFAKSIGKGSSSYTGDGNVPTLLQVMRPPTTQHNLQNGDSANTESNMIS" polyA_site 1304 /gene="LOC778757" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 78

XM_078636727.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100175690 (LOC100175690), mRNA. (662 bp)

CDS 71..571 /gene="LOC100175690" /codon_start=1 /product="uncharacterized protein LOC100175690" /protein_id="XP_078492363.1" /db_xref="GeneID:100175690" /translation="MLLKGYSIVVCWVLMINVAADLNIPFGLKQSEYCKLCKVTCDGIGRFKREGNKVSNLDQVCSKKYLLLEGVEMTKARKVCEHILEEYDDEMEGRVFTTSDIAFRSWLCNERSYACIGLRKDELDITAKKPIELKADDLTEDELVDLLMKDTKGRVMSPRYNNKEEL" polyA_site 662 /gene="LOC100175690" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 120

XM_078636237.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis Myc-induced nuclear antigen with a molecular mass of 53 kDa-like 1 (mina53-like1), mRNA. (1715 bp)

ESVPRGHNEWLGFHRPAEGHIDVLTEVPTPQKFWEDYCSLGKPVLLKGVALDMPARLKWTDEYMRENYGDLRVKLESKYEKDFKPEGDRGMGQDSMRRFLDTYIEHDKYMVSQLPDQLSEEVTVPQPILCGSFRERILEANIWMSSGNTKSLLHRDADNAFNCLLNGTKDWILIDPVHQDLLPVAVESGSPYGGYTLINVNKVDLIEFPAFKEVPWYYANISAGDCLFLPKGHWHQVRSYGAKNLAVSILFSRLNDFNPKGCPKEGVPPSELLSEVPMVWTYDGFGAQTMGNTDPFELKDELEMKCKHGDGKLTLQMFEEDMISGLDIEEEAYKGTLKVDADEYEIPDENIEIMKQRAKAIMDLIDPENIGYYDCNQLEDMTVDTLKKISDIKDPDPANTDQYEFLHLHPNLVRKTILSSLELSKESFMEKYHSHEGSMAGAEWIFETLDSDNDGRCTLAEVKGNMEKVLERFQDSLLADVTAHQAKKINQNSKDEL" polyA_site 1715 /gene="mina53-like1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN...

AA_position 318

XM_078634560.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis folate receptor gamma-like (LOC100183675), mRNA. (686 bp)

samples with support for all annotated introns" /db_xref="GeneID:100183675" CDS 119..628 /gene="LOC100183675" /codon_start=1 /product="folate receptor gamma-like" /protein_id="XP_078486357.1" /db_xref="GeneID:100183675" /translation="MSEKCRRHFNEDSCFYECSPNMGPWIVDVESSYRNQKFEDVPLCRSECDDWWVDCKDELTCKNNWSVGWNWTSGVNECPAGAKCKKFSEYFTGAVDLCENIYPRDFKVPSNDSAPCMPMWFEGENPNDEVSRYYAKEKGLCCGSSKFNYISYIFIIILAIFSKILTEIY" polyA_site 686 /gene="LOC100183675" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 56

XM_078630231.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC144745976 (LOC144745976), mRNA. (723 bp)

samples with support for all annotated introns" /db_xref="GeneID:144745976" CDS 125..637 /gene="LOC144745976" /codon_start=1 /product="uncharacterized protein LOC144745976" /protein_id="XP_078488475.1" /db_xref="GeneID:144745976" /translation="MVYADAMDEMMQRIKTGNVGLKKVRRYSEIPEGGDYKETEKYATLGPSASGQFKDELDDLKEGDVFSTLRKGLKAPGTNTLGVSGRKTSEPAVPMHIRQQLRKLHITDSDDMELGQSNENMLSPSRGLHRNVQCSVRHPKEISPELQKILDAKRARAKKQQQSVETEETS" ORIGIN //...

AA_position 54

XM_078632349.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative short-chain type dehydrogenase/reductase y4vI (LOC100183731), mRNA. (1588 bp)

genomic feature by RNAseq alignments" /db_xref="GeneID:100183731" CDS 1..1569 /gene="LOC100183731" /codon_start=1 /product="putative short-chain type dehydrogenase/reductase y4vI" /protein_id="XP_078487798.1" /db_xref="GeneID:100183731" /translation="MLVYATTRILKQCFRSGSATGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAAILLFSDIEGYTSEDFDKIFSVSVKAPIYLTKLAKPHLSKTKGSIVNMCSVAAKWYIKECLLYGMAKSSLAYLTKTTAADFAENGIRCNAISPGGVTDTEIFKVLTEEMRQELLKSGICKLHGRTITKSEVSDLIRFLASDKATMITGEVITMDDKKLLSYAAVSLDMSAIKRVVLVTGSSRGIGAETAKGFAEEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFG...

AA_position 46

XM_078631672.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative histone H1.6 (LOC104266556), mRNA. (1366 bp)

by RNAseq alignments" /db_xref="GeneID:104266556" CDS 624..1163 /gene="LOC104266556" /codon_start=1 /product="putative histone H1.6" /protein_id="XP_009861343.2" /db_xref="GeneID:104266556" /translation="MSDSTLPTVPVPSSAIAKKKKSTTKTATSATKVHPKYSDMIVSAVKTLRRPKGSSRQAITKYVQSNYDVGTGAAKHISRNLKSMVDKDELVLASGVGAAGRFRINKTAAAGKARTTKQRKSPKKKKKPVTKKNKRKTTAKKTRSPVKKRSAKKSPKKKLVKKNKKTVKKAVKKPLKKRK" polyA_site 1366 /gene="LOC104266556" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 87

XM_009863041.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis ADP-ribosylation factor-like protein 6 (LOC100182512), mRNA. (1881 bp)

GeneID:100182512" CDS 611..1168 /gene="LOC100182512" /codon_start=1 /product="ADP-ribosylation factor-like protein 6" /protein_id="XP_009861298.2" /db_xref="GeneID:100182512" /translation="MGIMNKLFGWLKGKKKEANVLCVGLDNSGKTTIINYLKPNDAQQVDIVPTVGFNVEKVTMTNLSFTVFDMSGQGRYRVLWSHYYKETQGVIFVVDSADKLRMAVAKDELDQLLKHQTIMNKRIPILFFANKMDVQNSLSAVKCSQLLGLETIKEKPWHICASNAKTGEGLSDGMHWLSDQLQTVK" polyA_site 1881 /gene="LOC100182512" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 106

XM_009862996.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis protein dj-1beta (LOC100178410), mRNA. (658 bp)

GeneID:100178410" CDS 52..612 /gene="LOC100178410" /codon_start=1 /product="protein dj-1beta" /protein_id="XP_078485486.1" /db_xref="GeneID:100178410" /translation="MSPTALVIIADGSEEIEAVVVIDVLRRAGVDVTVAGLTDDVTVTCSRNVKIQPDVNIATAAKNAPYDVIILPGGLKGANAMSKATSVKDLLSDQDKSCRLIGAICAAPMVLKSHGIGGGRNVTSYPAFKDELSDTFVYKEDVVVIDGHVVTSRGPGTAMKFVLEVVQLLCGDDVTNTTASALLFQL" polyA_site 658 /gene="LOC100178410" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 129

XM_078629360.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis calcium and integrin-binding protein 1-like (LOC100181080), mRNA. (727 bp)

by RNAseq alignments, including 91 samples with support for all annotated introns" /db_xref="GeneID:100181080" CDS 138..701 /gene="LOC100181080" /codon_start=1 /product="calcium and integrin-binding protein 1-like" /protein_id="XP_002128104.1" /db_xref="GeneID:100181080" /translation="MGSANSHFTKDELQEYSELTFFTKQEVLHVFEKFVELDQDNVNNDKLCRVSMEKVCQMPELKVNPFNDRICRIFSTSQNFDGSLSFEDFLDMMSVFSDQAPKGLKVEYAFKVYDFNEDDLLDAEDIEMVVSRLTGYAGSLKDDEMQQLLKNIMQEADLDNDDQLSYAEFEHVISKSPDFLNSFRIRL" misc_feature 450..659 /gene="LOC100181080" /note="EF-hand domain pair; Region: EF-hand_7; pfam13499" /db_xref="CDD:463900"...

AA_position 10

XM_002128068.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis protein canopy homolog 2-like (LOC101242532), mRNA. (1252 bp)

product="protein canopy homolog 2-like" /protein_id="XP_078492282.1" /db_xref="GeneID:101242532" /translation="MNAVYLLLLISIIPLVACKKDLNLYCGACKAIMHEVDYSIQQVDPNKKIDVGSFRVDPNGKTRTIQKSYARSESHLTGLLERVCSEISDNYVESKDPETGTKRLKRMVTHDGKMASNVDFQSLMEESKTQDAPPDAKSNRVKFACETIIEDFEDEILHHFKNAHTDGNVKICTELAEFCEATAKDEL" polyA_site 1252 /gene="LOC101242532" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 184

XM_078636156.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis large ribosomal subunit protein uL6 (LOC100177652), mRNA. (712 bp)

gene="LOC100177652" /codon_start=1 /product="large ribosomal subunit protein uL6" /protein_id="XP_078494957.1" /db_xref="GeneID:100177652" /translation="MKIIHSSQVVTLPDEVKVTVKGRVVTVRGPRGVLKKNFNHLKVELTKVGTNSVKVDKWFGNRKDLACVRTICSHINNMATGVTKGYRYKMRSVYAHFPINCNITEEGKKIEIRNFLGEKFVRRVDMRSGVKVVSSTKQKDELILDGNDIELVSLSAALIQQSTTVKNKDIRKFLDGIYVSQKTTIVEDEGL" polyA_site 712 /gene="LOC100177652" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 139

XM_078638831.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis basic phospholipase A2 KBf-VA-like (LOC100175981), mRNA. (725 bp)

including 38 samples with support for all annotated introns" /db_xref="GeneID:100175981" CDS 55..660 /gene="LOC100175981" /codon_start=1 /product="basic phospholipase A2 KBf-VA-like" /protein_id="XP_002128470.2" /db_xref="GeneID:100175981" /translation="MSFLTTAFLCLVCSFVLTNAESQKVSLGLFPDVPGRNMDKIFSKDELEQMLGTIEPAGSNELYDSIKYSTTATSLNLAKQIMCYQGKKWNFWNVLMVAAKYGKYGCWCGVGGKGTPVDGIDSCCKSHDLCFDAATKKWAPNYSSVQIYFHKYKMSCHQKTTACYGSGLSLALCECDKKISKCIHAAGNYCSGFAFGQTKNC" polyA_site 725 /gene="LOC100175981" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 44

XM_002128434.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis small ribosomal subunit protein uS7 (LOC100186730), transcript variant X2, mRNA. (806 bp)

ribosomal subunit protein uS7" /protein_id="XP_002129691.1" /db_xref="GeneID:100186730" /translation="MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR" misc_feature 205..765 /gene="LOC100186730" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(205..207,292..300,304..315,412..414,424..426) /gene="LOC100186730" /note="S9 interface [polypeptide binding]; other site" /db_...

AA_position 193

XM_002129655.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis small ribosomal subunit protein uS7 (LOC100186730), transcript variant X1, mRNA. (802 bp)

ribosomal subunit protein uS7" /protein_id="XP_004226822.1" /db_xref="GeneID:100186730" /translation="MEEDYEADVIVAEAPEVKLFGRWTTSDVQINDISLTDYLPVKDKYSKYLPHSSGRYQIKRFRKAQCPIVERLVNSMMMHGRNTGKKLLTVRIIKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQSVDVSPLRRVNQAIWLLCTGAREASFRNIKTIAECLADELINAHKGSSNSYAIKKKDELERVAKSNR" misc_feature 201..761 /gene="LOC100186730" /note="Eukaryota homolog of Ribosomal Protein S7; Region: uS7_Eukaryote; cd14867" /db_xref="CDD:271246" misc_feature order(201..203,288..296,300..311,408..410,420..422) /gene="LOC100186730" /note="S9 interface [polypeptide binding]; other site" /db_...

AA_position 193

XM_004226774.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative E3 ubiquitin-protein ligase DTX3 (LOC144746179), mRNA. (703 bp)

DTX3" /protein_id="XP_078489283.1" /db_xref="GeneID:144746179" /translation="MKLVSKSSFPLNQTSSAIAPTSKLKINFPPNFLREKDSKKEECKICLYDINSSKIKTLPCKHRFHETCVNTALKVNNLCPICKQAVGKVKGNQPHGTMIHRTQQHTHLPGYERYDAIVIDYHFPSGIQGPEHPNPGVRYTGTSRTAYLPDNYEGREVLRLLKKAFAARLIFTIGRSVTTGMDNQVTWNDIHHKTNPYGGATRFGYPDSDYLNRVKDELKAKGIQ" ORIGIN //...

AA_position 215

XM_078633157.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis glutathione S-transferase kappa 1-like (LOC100186348), mRNA. (740 bp)

start=1 /product="glutathione S-transferase kappa 1-like" /protein_id="XP_002126524.2" /db_xref="GeneID:100186348" /translation="MAQPARKILVEFFYDTVSPYSYIAFQVINCCNESWTNMDLKLKPAFLPAVMQQTNNAPPAMVPARGRYMSHDLLRMADFYKVPFKMPRDIIDVMMNKGTISAQRLLTVVATEAPQYLEGLSREIFMRVWVRDEDVTTVESLKDACRAVGMGHEVDELVGKMAHTDVKDELRRVTQAAIDYGSFGMPTCVAHLDGGPTMLFGSDRLFLLAHYLKQSWPCDVTDAKL" polyA_site 740 /gene="LOC100186348" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 167

XM_002126488.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100181115 (LOC100181115), mRNA. (2178 bp)

protein LOC100181115" /protein_id="XP_002131690.2" /db_xref="GeneID:100181115" /translation="MMDNPAYASKIEIGRKHTMYKKDVLPKHLTREKSNSFDVDNAVKLQLENVKTLKQDVQKSRQKVVQAIEKILSGDTYQYECCAEFGQDFLEDMLNSITTEESKLRNQVLGEQESVEMFKCAVSESQVSPTHLEAARMKRDEITQNLCVIVEEREKVFSALEVLHAVSPTKPNKVDLTLKNELKASVLKLKSEYTCANESLKDELDKLKTYTNWQRTPALMIKQLNAPTHTKSTPNLSSI" polyA_site 2178 /gene="LOC100181115" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 201

XM_002131654.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC144744379 (LOC144744379), mRNA. (921 bp)

protein_id="XP_078485100.1" /db_xref="GeneID:144744379" /translation="MSDEYFLCNFQYISLKKSHFKIYFNDSIRSSCKMPLEAMQPPKKRLNTVGHRVPSLVAQVHKMVGQINVFQFCAALVGIVFVLLTIILFVCFLAVFSVKKVSLHNVEENVTFTYQLKYNKTFNVDLLNVSRTIYKEEKTVFKTSVLSFLRQHLNTSEHSVQITEVLFHRSENPSTIVTFSVTFNDNFTSEMETIFDNIEKFSIGGSRVLHITAITKDELERRKASNEQDSNLEDVSLNKKRR" polyA_site 921 /gene="LOC144744379" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 216

XM_078628974.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis protein canopy 4-like (LOC100184874), mRNA. (1635 bp)

XP_002129613.2" /db_xref="GeneID:100184874" /translation="MSRFVILVVCGIVCTLCGRLQADDYLLEEPTSCEVCKYFVNELQDRLDETGKSKEILRTGHGLDPKKRKKIAYKTSELRLVDAMEGICERILQYNVHKERKGSLRFAKGRSETIETLQGLVAKGVKVDLGIPYDLWDEPSVEVTLMKKQCERMLEEYEDTIEDWYFNKQSSKDLLSYLCKENVLNKTNQACLAEQWTGKEKKYDDTDDDAVVESKKKRKGKKKKKKAPKSESSDAKAANKDEL" polyA_site 1635 /gene="LOC100184874" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 240

XM_002129577.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100178878 (gnrh1), mRNA. (1097 bp)

and 95% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:100178878" CDS 20..751 /gene="gnrh1" /codon_start=1 /product="preprogonadotropin-releasing hormone 1" /protein_id="XP_078495666.1" /db_xref="GeneID:100178878" /translation="MGFIKYLYLFACISYSAIAYPTSQMLDIEKDELAALLQRENSAFRDLLYHKNAGNFEKSDSGKFGSLKPQNNFPHLDLGLGVDLDAVDQWNRYKQANAQRMQDLGVPVNARQHWSYEFMPGGRRAAWENANVGVPVSRQHWSYEYMPGGRRSAGQHAMTKRQHWSKGYSPGGKRSVDLSEFDDQGRRITKHEGMPEEPFKVEQPRPRNGIHGPAGLDQNEPEWKNWMNEQPAVSSDDKGTDVE" polyA_site 1097 /gene="gnrh1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN...

AA_position 30

XM_078639540.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis vacuolar protein sorting-associated protein 37B-like (LOC100179674), mRNA. (1722 bp)

to its source genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 37B-like" /protein_id="XP_078487092.1" /db_xref="GeneID:100179674" /translation="MSQWSYNQYSHHGNRPAPNPKDEDDFSELLEDASKDELQMLIDNEDKILEIVMDDKKVKDMKMDNVMQQASNRSIADDNISKEPHLTQLRDALAXKYETLKQLNDTFLLNQAKLESLQKDTNLETTLAVLQTTCAQTEEESEELAEAFFAGNLPIGEFLTQFKAKRMLAHNRHIKTDKMKELVLEVQRQTSTPAVPPRNQPTNQTPAYPGSSRSAPHHTPYSSGYGVPQQGKYPGTSFNQPTGQQYLASNWK" polyA_site 1722 /gene="LOC100179674" /experiment="COORDINATES: polyA evidence...

AA_position 35

XM_078630966.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100181369), mRNA. (927 bp)

including 30 samples with support for all annotated introns" /db_xref="GeneID:100181369" CDS 78..839 /gene="LOC100181369" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_078488359.1" /db_xref="GeneID:100181369" /translation="MGAGKRVVLVTGSSRGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIALFKDIEEYTSEDFDKVFSINVKAPIYLTKIARPYLSKTKGNIVNLCSVARETYARNFLVYGMSKISIAHLTKTIAAGFTKYGVRCNAVCPGVVETDIYEGAIPTDRMRKIIGYNITKLKGRLTTKSEVSDLIRFLASNKATMITGELVTIDGGRSLL" polyA_site 927 /gene="LOC100181369" /experiment="COORDINATES: polyA evidence [ECO:0006239]"...

AA_position 41

XM_078632233.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis isopentenyl-diphosphate Delta-isomerase 1-like (LOC104266771), mRNA. (790 bp)

LOC104266771" /codon_start=1 /product="isopentenyl-diphosphate Delta-isomerase 1-like" /protein_id="XP_078488215.1" /db_xref="GeneID:104266771" /translation="MINTTCIANLSKFVVSHLKVPFSTCGRMSDSVDLNTYDTSQVKLMKEECIEVDSDDNVIGPRSKLDCHLLSNGPPLHRAFSLFLFNSKNELLMQKRANAKITFPGYYTNTCCSHPLHNATELEEKESYGVRHAAQRRLKDELGVPINQLPISDISFITRIHYKASCSDKWGEHEIDHVLFARKDVDLNVNPNEVSEVRYVSKDGMKDFTKECENAGVPLTPWFKLILHSHLFKWWDNIENLNAVKDQNEIVRCT" polyA_site 790 /gene="LOC104266771" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 139

XM_078632089.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis enkurin-like (LOC100180681), mRNA. (966 bp)

Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:100180681" CDS 110..877 /gene="LOC100180681" /codon_start=1 /product="enkurin-like" /protein_id="XP_026692710.2" /db_xref="GeneID:100180681" /translation="MDGPVESIYNLIPREVEKPPNPPRYNSKFKSTVKDELKYNRSPNKTMGPAKVAVPTPTSFLKKRSKEPVLPEKTVFEYSGEVSRRPPVPRHDDKPLLGIRTNKNFINTNAVENIMSVTKKPLPKYVDTRCGDNNLLEPSGLVPKYTNKPDYGQMPEYLKKRNAEVKRAQEEYDQYIRDRMKQGAMQQLSGAERDDIINGLKKNWEELHHQYQGLSVVTDTAPKKNRKERMEAEMKQLERDIELIEKHRVIYIAHN" polyA_site 966 /gene="LOC100180681" /experiment="COORDINATES: polyA evidence...

AA_position 34

XM_026836909.2 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100180582), mRNA. (1046 bp)

including 12 samples with support for all annotated introns" /db_xref="GeneID:100180582" CDS 70..840 /gene="LOC100180582" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_078488358.1" /db_xref="GeneID:100180582" /translation="MSAAKRVVLITGSSRGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKDNGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIFMSVDLEGYTSEDFDKIFSINVKAPIYLTKLAKPHLSKTKGNIVNMCSIARKNYTPNILLYGMTKASIEYLTKTTAADYATDGIRCNAVCPGVMATQIFDSSYDKEHIEAYLKNTTTKLRGRLVEISEVSDLIRFLASDKATMITGELVTIDGGYLLSKLS" polyA_site 1046 /gene="LOC100180582" /experiment="COORDINATES: polyA evidence...

AA_position 41

XM_078632232.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC144745783), mRNA. (771 bp)

Gnomon. Supporting evidence includes similarity to: 50 Proteins" /db_xref="GeneID:144745783" CDS 1..771 /gene="LOC144745783" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_078487799.1" /db_xref="GeneID:144745783" /translation="MSVCKRIVLITGSSRGIGAETAKGFAKERASLCITGLPSQKDELTEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNATIKTFGQLDVLVNNAGIFMSVDLEGYTSEDFDKIFSVNVKAPIYLTKLAKPHLSKTKGNIVNMCSIARKNYAPNRLLYGMTKTSIAYLTKTTAADYAMDGIRCNAVCPSGIATQLFENSFSKEQAPFFLESSTATVRGRLLQTNEVSDLIRFLASDKATMITGELVNIDGGYLLSKHA" ORIGIN //...

AA_position 41

XM_078631673.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis folate receptor gamma-like (LOC144744374), mRNA. (854 bp)

gene="LOC144744374" /codon_start=1 /product="folate receptor gamma-like" /protein_id="XP_078485090.1" /db_xref="GeneID:144744374" /translation="MNGLSLYLVLLVHVLSHCIFSVHCGEEILSICMDGKHHKESPGPEAELFDTCSPWKTRSCCTNETAFLTHQDGENGAYNFNYNHCGVMSEKCRRHFNEDSCFYECSPNMGPWIVDVESSYRNQKFEDVPLCRSECDDWWVDCKDELTCKNNWSVGWNWTSGVNECPAGAECKKFSEYFTGAVDLCENIYPRDFKVPSNDSAPCMLMWFEGENPNDEVSRYYAKEKGLCCGSSKFNYVSYIFIIILAIFSKFLTEIY" polyA_site 854 /gene="LOC144744374" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 143

XM_078628964.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100179031), mRNA. (893 bp)

including 9 samples with support for all annotated introns" /db_xref="GeneID:100179031" CDS 114..887 /gene="LOC100179031" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_002127522.2" /db_xref="GeneID:100179031" /translation="MDVTKRVVLITGSSTGIGAGTAKGFAKEGASLCITGLPAQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIQVYGDIEQYTSEEFDNVFSVNVKAMMYLTKLAKLYLSKTKGNIVNLCSVVRDWYLPKFIVYGMSKAAIEYLTKTTAADFAEIGVRCNAACPGMVLETNILINVVPEEVQQQFRKDCSTKLRGRTTTKSEVSDLIRFLASDKATMITGELVNIDGGKMLSLTA" polyA_site 893 /gene="LOC100179031" /experiment="COORDINATES: polyA evidence...

AA_position 41

XM_002127486.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100186091), mRNA. (1042 bp)

including 8 samples with support for all annotated introns" /db_xref="GeneID:100186091" CDS 200..973 /gene="LOC100186091" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_018668626.2" /db_xref="GeneID:100186091" /translation="MAATKRVVLITGSATGIGAETAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGITVNGGLDQYTNEDFDKIFSVNVKAPIYLTKLAKPHLSKTKGNIVNMCSVARECHIKDCLLYGMAKASLAYLTKTTAADFAENGIRCNAVSPGCISDTDILKGILSDEFKQQYFDSCITKLRGRLATKSDVSDLIRFLASDKATMITGEIITIDGGKVLSLRS" ORIGIN //...

AA_position 41

XM_018813081.3 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100176708), mRNA. (1219 bp)

including 25 samples with support for all annotated introns" /db_xref="GeneID:100176708" CDS 80..853 /gene="LOC100176708" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_002127640.2" /db_xref="GeneID:100176708" /translation="MAATKRVVLVTGSSTGIGAEIAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGILVYYDIDTYTGEDFDKIFSVNVKAPIYLTKLAKPHLSKTKGNIVNMCSIVREWYVKPLLLYGMTKASTAYLTKSTAADFAENGIRCNAVCPAVIAETEIFNGIVSEEVQQFYYKDGVTKLHGRTTTKSEVSDLIRFLASDKATMITGELVNIDGGKLVLMTS" polyA_site 1219 /gene="LOC100176708" /experiment="COORDINATES: polyA evidence...

AA_position 41

XM_002127604.5 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis putative oxidoreductase TM_0325 (LOC100175900), mRNA. (1083 bp)

including 19 samples with support for all annotated introns" /db_xref="GeneID:100175900" CDS 264..1037 /gene="LOC100175900" /codon_start=1 /product="putative oxidoreductase TM_0325" /protein_id="XP_002127470.2" /db_xref="GeneID:100175900" /translation="MDVTKRVVLITGSSTGIGAGTAKGFAKEGASLCITGLPSQKDELAEVAKVCKENGSPHVLEVAADLRKQEDMDLLMNETIKTFGQLDVLVNNAGIALYGDLEQYTSEEFDNVFSVNVKAMMYLTKLAKPYLSKTKGNIVNLCSVVKDWYLPKFIVYGMSKAAIEYLTKTTAADFAEIGVRCNAACPGMVLETNLMNSVVPKDVQQHFRENCSTKLRGRTTTKSEVSDLIRFLASDKATMITGELVTVDGGKMLSLTA" polyA_site 1083 /gene="LOC100175900" /experiment="COORDINATES: polyA evidence...

AA_position 41

XM_002127434.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis phytanoyl-CoA dioxygenase, peroxisomal-like (LOC100176685), mRNA. (914 bp)

CoA dioxygenase, peroxisomal-like" /protein_id="XP_078492339.1" /db_xref="GeneID:100176685" /translation="MSQDSSTWLQTPDFSEWKDKFDRDGYLVVKDILSSEEIKEYQTIFEELSTGNQTTTHRHDLGSHTTRKVKEHENISQTMWPSLFIPNLTQGILHTRALEVARSVLGGDIGFDFDMLISKAPHTDTETPMHQDESYWPDMPDKRAVTIWVAMDNATVDNGCMWFIPGSHKLPLRPFKSAKEGHHVIICDGNKDELHAAPITAGSCTLHHGRTVHYTRGNSTDFKRRAFIMNFRPAEMVQWERDHDFDHGKSKGVQGDEHFAKGTP" ORIGIN //...

AA_position 191

XM_078636213.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

Ciona intestinalis radial spoke protein Ci-RSP9 (ci-rsp9), mRNA. (1085 bp)

feature 121..123 /gene="ci-rsp9" /note="upstream in-frame stop codon" CDS 142..972 /gene="ci-rsp9" /codon_start=1 /product="uncharacterized protein LOC100179789" /protein_id="NP_001154962.1" /db_xref="GeneID:100179789" /translation="MDANGLHLNVDHVAGSGVILSPEQKAALQTSLIILKTHYKFNNVVLWGKILGIKDDYFIAQGSGKDELKDRKSLYSLNCIEWHLLPPATSEMKNKATMVRGRLMGDPSFEYEHTDVRRVRDGEEYTEEEVTIQIKEEDRVSAIVATIDEEASIVPRGAFIKTPLGQVYNNRSFEGLSVAECGKLSSFMHFREAQNFGNKSIKEKADLNPSIDFLDSIEDDIPKGSWSSQFERGSGLVCLRSLVWLGMTFYHVPNTTRFGCMYVGTGEKNFDIPFML" misc_feature <190..948 /gene="ci-rsp9" /note="Radial spokehead-like protein; Region:...

AA_position 65

NM_001161490.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis ribonuclease H1-like (LOC100175037), transcript variant X2, mRNA. (1585 bp)

for all annotated introns" /db_xref="GeneID:100175037" CDS 51..881 /gene="LOC100175037" /codon_start=1 /product="ribonuclease H1-like isoform X2" /protein_id="XP_078493392.1" /db_xref="GeneID:100175037" /translation="MLRCCIRSAIMKSFYAVHIGKSPGVYDTWSECLAQVSKFKGAKYKKFSSKDEASYFAHTGTELSKDKSDILDIFKDELADTSAKESKPNNIAQSSILSRKRKVKPDSNARFGKVQKTNEQPSIDSSNGSCPVVYTDGACSKNGRKGSKAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDVGHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKIEFQEMLKNMKKINVKFEHVFGHRGNYGNEMADKLAVQGARMPY" polyA_site 1585 /gene="LOC100175037" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 75

XM_078637266.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis radial spoke protein Ci-RSP9 (ci-rsp9), mRNA. (1538 bp)

with support for all annotated introns" /db_xref="GeneID:100179789" CDS 568..1398 /gene="ci-rsp9" /codon_start=1 /product="uncharacterized protein LOC100179789" /protein_id="XP_078491794.1" /db_xref="GeneID:100179789" /translation="MDANGLHLNVDHVAGSGVILSPEQKAALQTSLIILKTHYKFNNVVLWGKILGIKDDYFIAQGAGKDELKDRKSLYSLNCIEWHLLPPATSEMKTKATMVRGRLMGDPSFEYEHTDVRRVRDGEEYTEEEVTIQIKEEDRVSAIVATIDEEASIVPRGAFIKTPLGQVYNNRSFGGLSVAECGKLSSFMHFREAQNFGNKSIKEKADLNPSIDFLDSIEDDIPKGSWSSQFERGSGLVCLRSLVWLGMTFYHVPNTTRFGCMYVGTGEKNFDIPFML" polyA_site 1538 /gene="ci-rsp9" /experiment="COORDINATES: polyA evidence [ECO:0006239]"...

AA_position 65

XM_078635668.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis ribonuclease H1-like (LOC100175037), transcript variant X1, mRNA. (1589 bp)

for all annotated introns" /db_xref="GeneID:100175037" CDS 52..885 /gene="LOC100175037" /codon_start=1 /product="ribonuclease H1-like isoform X1" /protein_id="XP_078493390.1" /db_xref="GeneID:100175037" /translation="MLRCCIRSAIMKSFYAVHIGKSPGVYDTWSECLAQVSKFKGAKYKKFSSKDEASYFAHTGTELSKDKSDILDIFKDELADTSAKESKPNNIAQSSILSRKRKVKPDSNARFGKVQKTNEQPSIADSSNGSCPVVYTDGACSKNGRKGSKAGYGVWWGDDHKLNFSARLPGIPTNQRAEIAAVNKAIKQAIDVGHKQLLIRTDSKFVIDCITKWVQGWIRKGWVKADGKPVIHKIEFQEMLKNMKKINVKFEHVFGHRGNYGNEMADKLAVQGARMPY" polyA_site 1589 /gene="LOC100175037" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 75

XM_078637264.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC100180312 (LOC100180312), mRNA. (2166 bp)

codon_start=1 /product="uncharacterized protein LOC100180312" /protein_id="XP_078484704.1" /db_xref="GeneID:100180312" /translation="MNSNYRSSYKDKPARHVETPDQQSNIEVGALDYVNAQDLINQRDEALRKEEALRDRLKLQEAISAKQLNELRIQTRKLTTENQRFHKSSIISGAGGKGDRKRDAKVRDTKKLLKTIDQLQNENSTLKKKLEEMANFIQVASDIKLHSVSECKKKDELIFRLRAEKEATRHVIEEEVERRSKVENELYSFQNYLVYSSAKSREQLRHKAVQTMTSIPVRTAGLVRTGIVRSRLVRRTSSDIFHKPLITKKREIACPSYTAEVNKSALHRLKVVETKHKVQSDGMRKKFHDVIGRA" polyA_site 2166 /gene="LOC100180312" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 154

XM_078628578.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis large ribosomal subunit protein mL46 (LOC100182692), mRNA. (1233 bp)

translation="MNVSKCSSVLHGRLYPCFFNSIKQTKLLKRALTTQPNRSCDLDVETLSANRDPSPWKICAAVCLIRLPILTTELEEIEKKYAELSDLNEYERSVLSDWEVEKNRQANLIRDIESGEKNPEDMDFKVANQDIEEMNELEAQQFNEENETITIEDSDLTNINRQPNETLVMVTQQKLGKDSVWMLPVEAWSKEETLRECAERALISHCGTDVGAAFISNGPSGFYKYKFPKDARENSLVGAKLFIYNAYLPRVFIKDSKFTFPTQLCEDKVLQHAWLTKDELKSFTKPKFTNVIKKILL" polyA_site 1233 /gene="LOC100182692" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 277

XM_009860079.4 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis E2F-associated phosphoprotein (LOC100187353), mRNA. (1154 bp)

support for all annotated introns" /db_xref="GeneID:100187353" CDS 154..1056 /gene="LOC100187353" /codon_start=1 /product="E2F-associated phosphoprotein" /protein_id="XP_078490409.1" /db_xref="GeneID:100187353" /translation="MSDRIDGYSYYITNDSDDEEGCMDSSDDETGFPLDDQVDKFLHGTPQQQTRVLQRITGEDVSSSEDEFERTMKDELDEKMKTLEESWIDDYDLPVDFPKSTKDAASCSTSEQDVKQTNYYDNVYFDSDEETAEGEREKEKKKVVSDADLFYDPQADDDDQIWIDKQKERGKIQKSKSASSQKESPQLSCPACMATVCLDCQRHDTYQNQYRAMFVLNCTVHKDEVLHYKEPKKKVFKRHKRKHDGSSSASDIGYVRSTDAENNQQSTNDSYHPVKCQTCKTEIAVYDKDEVFHFFNVIAG" polyA_site 1154 /gene="LOC100187353" /experiment="COORDINATES: polyA...

AA_position 73

XM_078634283.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC144745993 (LOC144745993), mRNA. (1268 bp)

and 29% coverage of the annotated genomic feature by RNAseq alignments" /db_xref="GeneID:144745993" CDS 42..1049 /gene="LOC144745993" /codon_start=1 /product="uncharacterized protein LOC144745993" /protein_id="XP_078488665.1" /db_xref="GeneID:144745993" /translation="MLDDKHTLSATSISLLILQELKFIRQDMKDELTKLRQANCNKCKNNEKGGSLLRDGFELVSANEENMKGISLLENSPLNIEEPSSEISNEQPVLTEAQTSELSELQIGCVYGNFSTAMDDINNDISTMSSNTKCISNANTDINMEQDTVVALPVVTTQEKQSSEKLNTDISDVKTVVVTNKTAKANSPKVSFKSQHYVSNPSSVPDQQLQVFSGKQKLNLSASASSSSPNDKYTKRRYTCKHCGKDFKSRYMMRRHIVMGHSFKPKHVCTYCKKVFVSNSDMIIHVRRMHTGVKPFACSVCDVNFSCVGHLNYHMKTTHKNIFVNDNNYMNN...

AA_position 29

XM_078632539.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis E3 ubiquitin-protein ligase RNF34-like (LOC100178192), mRNA. (1716 bp)

MPCACCSAQFSILKWKSRCSNCFQLFCSDCSIDRECRPCCYVNRCKSSKTSLMQIKVKDLQGYLKNFKIEHRTCKEKHELVKLIQNQFGITSNENVQPPSSYTTHDNRANEDQRRDENSDQNQSESSSTEDPAVHFPTPPTYQRTQESFPTAEQFNVSSSTNNYSTDSPIVIEDSDESTPTHNDANTMENNGVTEETSTSYAFSSPAVERTEKKTKIGLSEIKSVQEIESYSIKQLKTLLQENLVNYKGVLERTELVNRVKNLYEDHVSNESNISEDIAEENSSSSFTNKDELFCKICWERPRDCVLLECAHMSTCITCGKQLRECPICRQHIVRAVRVFKS" polyA_site 1716 /gene="LOC100178192" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 290

XM_002121871.6 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

PREDICTED: Ciona intestinalis uncharacterized LOC104265765 (LOC104265765), mRNA. (2807 bp)

protein LOC104265765" /protein_id="XP_078485046.1" /db_xref="GeneID:104265765" /translation="MNNNNLNGDDFPFVNNNRRSAGPPKLIPIGYLPNPTSFGSFPRFPNPLATNERQNHRQMQLPVRASTGSRRSRHFVPNECKDEYYWRKRKKNNEAARKSREKRKTIDSVLEDKVLFLSQENLCLRNELYALKVKYGEIDGTEAGANNLLSDKDHTDDLSMYSMLPSPSNSLSEVECKSSSNMCQRESTPPPVIYPEGPNEKDELAMHNLHKISELHTKTADGNFKVDDFEPTREVICQTREPHSILSNLAAGKFVLTSIDLPEKSPTQGVDLTMKSAARDSQAIAQNSVPGSDCVTYEAASVLVDLLKMSQNPQTPEKKLEDESCSKYNSSLPHKLRFKGRNLEV" polyA_site 2807 /gene="LOC104265765" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN //...

AA_position 201

XM_078628920.1 - Ciona intestinalis (vase tunicate) - NCBI - UCSC

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0.000 | 0.000 | search_start;
0.078 | 0.078 | count_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Ciona intestinalis (vase tunicate)?to=0&format=json
0.131 | 0.053 | search_done; http://172.18.8.71:7700/v1/refseq/query?q=(aa:KDEL)?source=Ciona intestinalis (vase tunicate)?to=49?from=0?snippet=full_search?drilldown=source?get=accession,version,gi,length,symbol,synonym,geneid,division,source,definition&format=json
0.137 | 0.005 | cgi_end;

If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596. [Full Text]

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