2024-09-29 09:14:34, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_061436 3160 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Protein argonaute-2 (alg-2), mRNA. ACCESSION NM_061436 VERSION NM_061436.6 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 3160) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 3160) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 3160) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 3160) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003280). On Feb 2, 2021 this sequence version replaced NM_061436.5. FEATURES Location/Qualifiers source 1..3160 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="II" gene 1..3160 /gene="alg-2" /locus_tag="CELE_T07D3.7" /db_xref="GeneID:173468" CDS 3..2678 /gene="alg-2" /locus_tag="CELE_T07D3.7" /standard_name="T07D3.7b" /note="Confirmed by transcript evidence" /codon_start=1 /product="Protein argonaute-2" /protein_id="NP_493837.1" /db_xref="GeneID:173468" /translation="
MPGDSLTSSSFMPDGGAETSSSSQLGGSAHGAIGTKPDAGVQFQCPVRPNHGVEGRSILLRANHFAVRIPGGSVQHYQIDVFPDKCPRRVNREVIGCLISSFSKYFTNIRPVYDGKRNMYTREPLPIGTEPMNFEVTLPGDSAVERKFSVTMKWIGQVCLSALDDAMEGRVRQVPHEAVQSIDVILRHLPSLKYTPVGRSFFTPPGVMKPGMQMHQESKLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYRAMPVIEFVAEVLELPVQALAERRALSDAQRVKFTKEIRGLKIEITHCGAVRRKYRVCNVTRRPAQTQTFPLQLETGQTIECTVAKYFFDKYRIQLKYPHLPCLQVGQEQKHTYLPPEVCDIVPGQRCLKKLTDVQTSTMIKATARSAPEREREICKLVSKAELSADPFAHEFGITINPAMTEVKGRVLSAPKLLYGGRHRATTALPNQGVWDMRGKQFHTGMEVRTWAIACFAQQSHVKENDLRMFTTQLQRISTDAGMPIIGTPMFCKYASGVEQVEPMFKYLKQTYSAIQLIVVVLPGKTPIYAEVKRVGDTVLGIATQCVQAKNAIRTTPQTLSNLCLKMNVKLGGVNSILLPNVRPRIFNEPVIFLGCDITHPAAGDTRKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIITDLTYMVRELLVQFYRNTRFKPARIVVYRDGVSEGQLFNVLQYELRAIREACVMLESGYQPGITFIAVQKRHHTRLFAADKADQVGKAFNIPPGTTVDVGITHPTEFDFFLCSHAGIQGTSRPSHYHVLWDDNDLTADELQQLTYQMCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDRDHGSGEEGSQPSGTSSEDTTLSSMAKAVQVHPDSNNVMYFA"
misc_feature 168..560 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 588..764 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 765..1130 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(924..926,969..971,1011..1013,1023..1025,1077..1079, 1098..1100,1104..1106) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1263..2543 /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(1677..1679,1689..1691,1725..1736,1743..1745, 1767..1769,1776..1778,1788..1790,1800..1802) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(1881..1883,1887..1889,2097..2099,2511..2513) /gene="alg-2" /locus_tag="CELE_T07D3.7" /note="active site" /db_xref="CDD:240015" ORIGIN
aaatgcccggcgattcgctgacatcgtcgtctttcatgccagatggtggcgcagaaacgtcgagctcttcacagttgggcggctcggctcacggagcaattggcacaaaacccgacgcaggcgtccaattccagtgcccagtccgtccgaaccatggagtcgagggccgatccatcctcctgcgagccaatcattttgcagtacggatccccggaggttcagtccaacattatcaaattgacgtctttccggacaagtgcccaagacgggttaatcgcgaggtaatcggctgcctgatctcctccttctcaaaatatttcaccaatattcgaccagtctacgatggaaagcgtaacatgtacacgcgggagcccctaccaattggcacggagcccatgaactttgaggtgacgctgcctggagattcagcagtggaacggaagttctcagtgacgatgaagtggatcggtcaggtctgtctgtcagctctggacgatgccatggaaggtagagtgcggcaggttccacatgaagccgttcagtcgatcgatgtgattcttcgccacttgccaagtttgaagtacaccccggttggaaggtcgtttttcacacctccaggcgtcatgaagcccggcatgcaaatgcaccaggagagcaaactcggtggaggccgcgaagtatggtttggattccatcaatccgtccgaccatcccaatggaagatgatgctcaacattgacgtctccgccacggccttttaccgcgcgatgccagtcatcgaattcgtcgccgaggtgctcgagctcccagtccaagctctcgccgagcgtcgggccctctccgatgctcaacgcgtcaaattcaccaaagagatccgtggactcaagattgagatcacccattgtggagccgtgcgccggaagtacagagtttgcaacgtcacacgccgcccggcccagacccagaccttcccattgcaactggagactggccaaactattgagtgtactgtagccaagtacttctttgacaagtaccgtatccagctgaagtacccccaccttccatgcctccaagtcggtcaggagcagaagcatacgtacctgccaccagaggtctgcgatattgttccaggacagcgttgtctgaagaagctcaccgatgtgcagacgtccaccatgatcaaggccacggctcgttccgctccagagcgtgagcgtgagatttgtaagctagtaagcaaggctgagctctccgcggatccatttgctcatgaattcggaatcactatcaatccagcaatgactgaagtcaagggacgtgtgctctcggctccgaagcttctctatggaggtcgtcatcgtgccacaactgcccttccgaaccagggagtctgggatatgcgcgggaagcagttccacactggaatggaagtccgtacctgggcgattgcatgctttgctcagcaatctcatgtcaaggaaaatgatctcaggatgttcacgactcaattgcaaaggatctctaccgacgctggaatgccaatcatcggtacccctatgttctgcaaatatgcttctggagtggagcaggtggagccgatgttcaagtacttgaagcagacctattcggcgattcagttgattgtggtggtgctgccaggaaagactccgatctatgccgaagtgaaacgcgtcggagacaccgtcctcggaatcgccacccagtgcgtccaggccaagaacgccatccgaaccaccccgcagacactctccaacctctgtctcaagatgaatgtgaagcttggtggagtcaacagcatcctcctgccaaacgtgcgtccacggatcttcaacgagcccgtcatcttcctgggttgcgacatcacccatccagcagccggtgatacccgtaagccatccatcgccgcagtggtaggatctatggatgctcacccgagtagatatgcggcaacagttcgggtccagcagcaccgtcaggagatcattacggatctgacatatatggttcgagagttgcttgtccagttctaccgtaacacgaggttcaagccagcccgaattgtggtctacagagatggagtgtctgagggtcaactcttcaatgtgctccaatatgagctccgcgcaattcgtgaagcttgtgtgatgcttgagagtggataccagccaggaatcacatttatcgctgtgcaaaagagacatcacacaaggctcttcgccgcggataaagctgatcaagtaggaaaagcattcaacatcccaccaggaacaactgtagatgtgggaatcacgcatccaacggaattcgacttcttcctctgctcccacgctggtatccaaggaacatcccgaccatctcactaccatgtgctctgggatgacaatgatctgacggccgacgagcttcaacagttgacctaccaaatgtgtcatacctatgtaagatgcacgaggtctgtgtcgatcccggcgccggcgtactatgcacatctggtggcgttccgtgctcgttatcacttggtcgatagggatcatggatccggagaggaaggatcacaaccttcggggacgtcgtcggaggatacaacattgtcaagcatggccaaggccgtacaggttcatcccgactcgaacaacgtcatgtattttgcctaagtctccaactacggattctctgccatttcacagccacttgttatctatgcatctcgattttcatttttcccgtttcctctgccccctgagattttcatgtttttccttcccctaattatcaatatcaatcaatactttaatatctttcaagcccaggtttataatatttccaattatgttaggtgtttaattttcaccaagttttttttccatttttttccaaatttcttgagccattttccatactagccacacaatgctttttcgatcctccaaatactttccatttgtgtctttatccccctctgctctaattaaatacgaccttatcactcaattggtacactttgttgtaaactgtctttctcttagtatctgaaaaaaaacctcatgattgtcctgtttttcaacccacccccacccacaatgcctttttgtgtttcccaatggcaagtccaacagaataaagtgatattttggaa
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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