2024-09-29 09:16:32, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_001392882 4592 bp mRNA linear INV 11-JUN-2024 DEFINITION Caenorhabditis elegans Protein argonaute-2 (alg-1), mRNA. ACCESSION NM_001392882 VERSION NM_001392882.1 DBLINK BioProject: PRJNA158 KEYWORDS RefSeq. SOURCE Caenorhabditis elegans ORGANISM Caenorhabditis elegans Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. REFERENCE 1 (bases 1 to 4592) AUTHORS Sulson,J.E. and Waterston,R. CONSRTM Caenorhabditis elegans Sequencing Consortium TITLE Genome sequence of the nematode C. elegans: a platform for investigating biology JOURNAL Science 282 (5396), 2012-2018 (1998) PUBMED 9851916 REMARK Erratum:[Science 1999 Jan 1;283(5398):35] REFERENCE 2 (bases 1 to 4592) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (11-JUN-2024) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4592) AUTHORS WormBase. CONSRTM WormBase Consortium TITLE Direct Submission JOURNAL Submitted (23-MAY-2024) WormBase Group, European Bioinformatics Institute, Cambridge, CB10 1SA, UK. Email: help@wormbase.org REFERENCE 4 (bases 1 to 4592) AUTHORS Sulson,J.E. and Waterston,R. TITLE Direct Submission JOURNAL Submitted (03-MAR-2003) Nematode Sequencing Project: Sanger Institute, Hinxton, Cambridge CB10 1SA, UK and The Genome Institute at Washington University, St. Louis, MO 63110, USA COMMENT REVIEWED REFSEQ: This record has been curated by WormBase. This record is derived from an annotated genomic sequence (NC_003284). FEATURES Location/Qualifiers source 1..4592 /organism="Caenorhabditis elegans" /mol_type="mRNA" /strain="Bristol N2" /db_xref="taxon:6239" /chromosome="X" gene 1..4592 /gene="alg-1" /locus_tag="CELE_F48F7.1" /db_xref="GeneID:181504" CDS 30..3038 /gene="alg-1" /locus_tag="CELE_F48F7.1" /standard_name="F48F7.1a" /note="Confirmed by transcript evidence" /codon_start=1 /product="Protein argonaute-2" /protein_id="NP_001379113.1" /db_xref="GeneID:181504" /translation="
MSGGPQYLPGVMNSTIQQQPQSATSSFLPSGPISSTSTSSQVVPTSGATQQPPFPSAQAAASTALQNDLEEIFNSPPTQPQTFSDVPQRQAGSLAPGVPIGNTSVSIGEPANTLGGGLPGGAPGQLPGGNQSGIQFQCPRRPNHGVEGRSILLRANHFAVRIPGGTIQHYQVDVTPDKCPRRVNREIISCLISAFSKYFTNIRPVYDGKRNMYTREPLPIGRERMDFDVTLPGDSAVERQFSVSLKWVGQVSLSTLEDAMEGRVRQVPFEAVQAMDVILRHLPSLKYTPVGRSFFSPPVPNASGVMAGSCPPQASGAVAGGAHSAGQYHAESKLGGGREVWFGFHQSVRPSQWKMMLNIDVSATAFYRSMPVIEFIAEVLELPVQALAERRALSDAQRVKFTKEIRGLKIEITHCGQMRRKYRVCNVTRRPAQTQTFPLQLETGQTIECTVAKYFYDKYRIQLKYPHLPCLQVGQEQKHTYLPPEVCNIVPGQRCIKKLTDVQTSTMIKATARSAPEREREISNLVRKAEFSADPFAHEFGITINPAMTEVKGRVLSAPKLLYGGRTRATALPNQGVWDMRGKQFHTGIDVRVWAIACFAQQQHVKENDLRMFTNQLQRISNDAGMPIVGNPCFCKYAVGVEQVEPMFKYLKQNYSGIQLVVVVLPGKTPVYAEVKRVGDTVLGIATQCVQAKNAIRTTPQTLSNLCLKMNVKLGGVNSILLPNVRPRIFNEPVIFFGCDITHPPAGDSRKPSIAAVVGSMDAHPSRYAATVRVQQHRQEIISDLTYMVRELLVQFYRNTRFKPARIVVYRDGVSEGQFFNVLQYELRAIREACMMLERGYQPGITFIAVQKRHHTRLFAVDKKDQVGKAYNIPPGTTVDVGITHPTEFDFYLCSHAGIQGTSRPSHYHVLWDDNNLTADELQQLTYQMCHTYVRCTRSVSIPAPAYYAHLVAFRARYHLVDREHDSGEGSQPSGTSEDTTLSNMARAVQVHPDANNVMYFA"
misc_feature 474..866 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="N-terminal domain of argonaute; Region: ArgoN; pfam16486" /db_xref="CDD:465134" misc_feature 894..1133 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="Argonaute linker 1 domain; Region: ArgoL1; pfam08699" /db_xref="CDD:462567" misc_feature 1134..1499 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille; Region: PAZ_argonaute_like; cd02846" /db_xref="CDD:239212" misc_feature order(1293..1295,1338..1340,1380..1382,1392..1394, 1446..1448,1467..1469,1473..1475) /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="nucleic acid-binding interface [nucleotide binding]; other site" /db_xref="CDD:239212" misc_feature 1632..2909 /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of which provides the...; Region: Piwi_ago-like; cd04657" /db_xref="CDD:240015" misc_feature order(2043..2045,2055..2057,2091..2102,2109..2111, 2133..2135,2142..2144,2154..2156,2166..2168) /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="5' RNA guide strand anchoring site [active]" /db_xref="CDD:240015" misc_feature order(2247..2249,2253..2255,2463..2465,2877..2879) /gene="alg-1" /locus_tag="CELE_F48F7.1" /note="active site" /db_xref="CDD:240015" ORIGIN
agtcgtctaacgtcgcctcaaacgacccaatgtccggcgggccgcaatatttgccaggagtcatgaattctaccattcaacagcaaccacagagcgcaacatcgtcgtttctgccaagtggaccgattagttcgacgtccacctcctcgcaagttgttccaacatctggagccacccagcagccgcctttcccgtcggcacaagcggctgcgtcaacagcgctccaaaatgatctagaagaaatatttaattctccgcctactcagccacaaacatttagcgatgttcctcaaagacaagccggaagcctggctccaggagttcccattggtaatacaagtgtctcaattggagaaccagcaaatacacttggaggcggtttaccaggcggagcaccgggacaattacctggcggcaaccagagtggtattcaattccaatgtcctcgacgcccaaaccacggagttgagggtcgctcaattcttcttcgcgccaaccactttgcagtgagaattcctggaggaactattcaacactaccaggtcgatgttactccagacaagtgcccaagaagagttaatcgcgagattatcagctgcttgataagcgcattctccaagtacttcactaatattcgccctgtttacgatggaaagcgcaatatgtacacccgcgagccccttccaattggaagagaacgtatggatttcgatgtcacacttcctggagactccgccgttgagcgtcaattttcggtttctttgaaatgggtcggacaagtttctctctccactctggaggatgccatggaaggaagagttcgccaggttccattcgaagccgttcaagctatggatgtcattcttcgtcatcttccaagcttgaaatacactcctgtcggacgttcattcttctcgccaccagttcctaatgcttctggagtcatggcaggatcatgccctccccaggcttctggagctgtcgcaggaggtgcccactccgctggacaatatcacgccgagagcaaactcgggggtggccgtgaagtctggtttggattccatcagtcggttcgcccatctcagtggaaaatgatgcttaacattgatgtctctgcgactgctttctatcgttccatgccagtcattgagttcatcgccgaagttttggagcttccagttcaagctcttgctgagcgtcgtgctctatctgatgctcaacgtgtcaagttcaccaaggaaattcgtggtctcaaaattgaaatcacccactgtggacaaatgcgcagaaagtatcgtgtctgcaacgtcactcgtcgtccagctcaaactcaaactttcccacttcaattggagactggtcaaactattgagtgcactgtcgccaagtatttctatgacaagtacagaattcaactcaaatacccacacttgccatgcctccaagttggacaggaacaaaagcacacctacctgccaccagaggtgtgcaacattgttccaggacaacgttgcatcaagaagcttacggatgtgcagacatcgacaatgattaaggctacagctcgttctgctccagaacgtgagcgtgagatttccaacttggtccgcaaggccgagttctcagctgatccatttgctcacgaattcggaatcaccatcaacccagcaatgactgaagtcaagggacgcgttctttctgctccaaaacttctctacggtggacgcactcgagccaccgctctcccgaatcaaggagtttgggatatgcgtggaaaacagttccacactggaatcgatgttcgtgtctgggcgatcgcttgttttgctcaacaacagcatgtcaaggagaacgatctccgcatgttcaccaaccagcttcagcggatttccaacgacgctggtatgccaatcgtcggaaatccatgcttctgcaagtacgctgttggagtcgagcaggttgagccaatgttcaagtacttgaaacaaaactactctggaattcaacttgtagtggttgttctccctggaaaaactccagtttatgctgaagttaaacgtgttggagacacagttttgggtatcgccacccagtgcgtgcaagccaagaacgcaatccgaacaactccacaaactctttctaatttatgcttgaagatgaacgtaaagcttggaggagtcaacagtattctgcttccaaacgtacgcccaagaatcttcaacgaaccagtcattttctttggatgtgacatcactcatccaccagcaggagactctcgcaaaccatccatcgcagcagttgtcggctcaatggatgctcatcctagcagatatgctgcaaccgtccgtgtccaacaacatcgtcaagagatcatctcagatttaacctacatggtccgcgagcttcttgttcaattctaccgcaacactcgcttcaagccagccagaatcgttgtctaccgtgatggagtttctgaggggcaattcttcaacgttcttcaatatgagcttcgcgcgattcgcgaggcttgcatgatgcttgaaagaggatatcaaccaggaatcactttcatcgccgtccaaaagagacatcacactcgtctctttgctgttgataagaaggatcaagtcggaaaagcatacaatattccgccaggaactactgtcgatgtaggaattacccacccaaccgagtttgacttctacttgtgctctcatgctggtattcaaggaacatctcgtccatcccattaccatgttctttgggatgacaacaatctgacagccgacgaacttcaacagctcacatatcaaatgtgccatacctacgtcagatgcacacgatccgtttcaattccagcgccagcatattatgctcatttggtagcgttccgcgctcgttatcatcttgtcgatcgcgagcatgactctggagaaggttctcagccatctggaacttccgaggataccaccttgtcgaacatggctagagctgtgcaggttcatccggatgccaacaacgtcatgtactttgcttaaactaggaatctgcctaggaatcgacttcatagatagctattactcaccaacttgctctaacagaagacgagtattgaatattgtcatgtctacctaatatctatcttgataattctgtgtctttatctgtatctgtatctccattcaaattgatttcaatatgctacaatgttataatgtttttctataatcggactcttatgttttcaaattccatatttaatttgtaattctaattgccgctacctctcgtgtaactgttttctttcttccatccatttttcacttcccacaaccaaaatgcctttacttagtgacttttcctctcatcctggtagcctacaaagcttcaaaacccatttaatatccttaatatttttcctcgcagttgattacattgtccaaatgcactgctgtcgtctttccaccttgtaacctccgagagcaccgagcactacgactcctctcttcacactcacatcttctcgctgagcaatcatcttgaaatgcttctttcttcaacttacgggcttgatctgtcaaattccttccaatttctcatcgcctacagtagtcctagttgcgtttgatgttgacctattcgacttccttccccaaacaaccattaaaaacattacgagaatgctgatgttttctccgcaaaatagccgaaatttgggctagattttactctgcgctcctggtgagtcttgtatgttcttgcacttcaaatccacacgtatgtggcagtttatggctttcaatgctgaaacacatatactgatggacgcctggaacacttgaccacccatcaagacgtgatcggtaaaatttactctgggtgtcttctattttcgtgcagagttctgcatttgttatggcattaacttcgtgattgttcacttcactcacatatttgaaaattctgacgcaatatttatcaccttcagttgaatatttttgcattgtgctacaatctttcattttttcttgaactctcaataccctgtcatcaaaaaaatcaccaatatatcttgtcaagtgcatctttccaattgattctttcttcattcactctctcactttctttcttgcaaatactaatttttagggtttttattatttacaaaattattgtaacatttaattactctaactttaggatttaatcttcagtaaattaacttacaattttccaacccaaaaaataatattaaaaaactcccctcttcacttcatttccacaatttgtcatactttcaacatctctacctgacgtcccctaagctcttatatttttgatccagctgcctaactaaaaaaaactcgctctcaacctcaacttttgtgtcttactgtatttccaaacaaacccttttctctttcaaaaccctttcccacttccccctgatcctgatgtctgaaagtcttccccccaccccacccacagaaaacctttttccgcatttgtgttgtaatttgcattctcatgcattttgtacaatgtgtgattttgttttttttctttgcaaatgaagcgatgagggaccaaaa
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If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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