2024-09-29 03:48:48, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_202092 1604 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana RING/U-box superfamily protein (AT1G14180), mRNA. ACCESSION NM_202092 VERSION NM_202092.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 1604) AUTHORS Theologis,A., Ecker,J.R., Palm,C.J., Federspiel,N.A., Kaul,S., White,O., Alonso,J., Altafi,H., Araujo,R., Bowman,C.L., Brooks,S.Y., Buehler,E., Chan,A., Chao,Q., Chen,H., Cheuk,R.F., Chin,C.W., Chung,M.K., Conn,L., Conway,A.B., Conway,A.R., Creasy,T.H., Dewar,K., Dunn,P., Etgu,P., Feldblyum,T.V., Feng,J., Fong,B., Fujii,C.Y., Gill,J.E., Goldsmith,A.D., Haas,B., Hansen,N.F., Hughes,B., Huizar,L., Hunter,J.L., Jenkins,J., Johnson-Hopson,C., Khan,S., Khaykin,E., Kim,C.J., Koo,H.L., Kremenetskaia,I., Kurtz,D.B., Kwan,A., Lam,B., Langin-Hooper,S., Lee,A., Lee,J.M., Lenz,C.A., Li,J.H., Li,Y., Lin,X., Liu,S.X., Liu,Z.A., Luros,J.S., Maiti,R., Marziali,A., Militscher,J., Miranda,M., Nguyen,M., Nierman,W.C., Osborne,B.I., Pai,G., Peterson,J., Pham,P.K., Rizzo,M., Rooney,T., Rowley,D., Sakano,H., Salzberg,S.L., Schwartz,J.R., Shinn,P., Southwick,A.M., Sun,H., Tallon,L.J., Tambunga,G., Toriumi,M.J., Town,C.D., Utterback,T., Van Aken,S., Vaysberg,M., Vysotskaia,V.S., Walker,M., Wu,D., Yu,G., Fraser,C.M., Venter,J.C. and Davis,R.W. TITLE Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 816-820 (2000) PUBMED 11130712 REFERENCE 2 (bases 1 to 1604) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 1604) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (18-JUL-2017) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 1604) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 5 (bases 1 to 1604) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003070). On Jun 19, 2009 this sequence version replaced NM_202092.3. FEATURES Location/Qualifiers source 1..1604 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="1" /ecotype="Columbia" gene 1..1604 /locus_tag="AT1G14180" /gene_synonym="F7A19.26" /db_xref="Araport:AT1G14180" /db_xref="GeneID:837977" /db_xref="TAIR:AT1G14180" CDS 476..1369 /locus_tag="AT1G14180" /gene_synonym="F7A19.26" /inference="Similar to RNA sequence, EST:INSD:AU230063.1,INSD:ES149377.1,INSD:AU238820.1, INSD:EH893060.1,INSD:ES207033.1,INSD:ES207332.1, INSD:ES060616.1,INSD:EL047537.1,INSD:EL197016.1, INSD:EL204398.1" /inference="similar to RNA sequence, mRNA:INSD:BX813763.1" /note="RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G18260.1); Has 163 Blast hits to 162 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 160; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink)." /codon_start=1 /product="RING/U-box superfamily protein" /protein_id="NP_973821.4" /db_xref="Araport:AT1G14180" /db_xref="GeneID:837977" /db_xref="TAIR:AT1G14180" /translation="
MVLAVMDLPHHQMLMFFVVPTFLKLFIGHLTILNLLQEEIVKQLPGTSRNVGIGDSEPGRNSSSRRFFLSKPVHPILHPSDNVRDTASDSADACSWSSGTPSSIDSVDVPEPVLDWNNNSTKAQQVAASSTFKCGLCNRYLSQKSPWGSRSIVRNRDMPVTGVLSCQHVFHVECLDQSTPKIQRNDPLCPICTKQEGEHFKSNNIVPRLKPLYEDGPSSRPWGCAQAGDCVESAVNVPPKNTMMMINRNRIRKSLSLRGNSSKDFSRKMKRSNSVAMENLANQVSLVHSRGKEKVSW"
misc_feature <962..1051 /locus_tag="AT1G14180" /gene_synonym="F7A19.26" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" ORIGIN
aaagttagatagacacagtacaagtaaagaagaagcagatttctcccctttccaagaaattagggtttttggcttcgatcgaatttgcggcaagtaggttcaatttcttccgacaacagtcatcttcttcctcatttgtctctccgagtttcgaagcagtgagctaagctaaagaacaaggaacaaaaccaaattatgtgtttgcgagatctgtctcatagtttatggagttggagaggtgtttaagcttggtattgagaagctatactgttgtcagcttgaggtgtttttagcgaaagggtctatcgagtgaatagaagttaaagtatgggttcgctctgttgtgtagctgcgaagtcagatagatcaaattctacaagtggggacttttcatttggcctgcatgagccttattggaggactaatacaagtttctctcctccttcatcgagatgggacgtccatggattaatggatggtattagctgttatggatcttccacatcatcaaatgctaatgttcttcgtagtcccgacctttctcaagctcttcattggacacctaacgattttgaatctgctacaagaagagattgttaagcaactaccaggtacatcaagaaatgtcggtattggtgactctgaacctggtcgtaactcctcaagccggcgctttttcttgtctaagccggttcatcctatactgcatccttctgataatgttagggatacagcatctgattctgcggatgcctgcagttggagcagcgggaccccaagcagcattgattctgtggatgttcctgagccagttcttgattggaataataactctaccaaagcacaacaagtagcagcttcaagtacatttaaatgcggactgtgtaacagatacctctcgcagaaatctccgtggggatctcggtccattgtaagaaaccgagacatgcctgtcacaggagtgctttcatgtcaacatgtctttcacgtggaatgtcttgaccaatcaactccaaagattcaacgcaatgacccactgtgtccaatatgcaccaaacaggaaggagaacacttcaaatcaaacaacattgtcccgaggcttaaaccgctttatgaagatgggccatcttcaagaccatggggctgtgctcaggccggtgactgtgttgaaagtgctgtcaatgtgccccctaaaaacaccatgatgatgataaaccggaaccggataaggaaaagcctctcattgagaggaaactcaagcaaagatttttcaagaaaaatgaagagaagtaactcagttgccatggaaaatctggctaatcaagtctcgcttgttcattctagagggaaagagaaagtttcatggtagctggaggaaaaaagcagagtgatcaaaacgtcgatttttctggcctagttaaacatttaaccttttgacaagtattgatcttggaagaccagtgaagtactgtagagtattcattttggaacatctgtaagcaaatttgtttagagctttgatgttgttattcatcctgtaatcatctctgttggagaccatcttgaccggtttattatccaatctagaaggttttttggttcgg
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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