2024-09-29 03:49:26, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_180788 2575 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana Heat shock protein 70 (Hsp 70) family protein (BIP2), mRNA. ACCESSION NM_180788 VERSION NM_180788.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2575) AUTHORS Tabata,S., Kaneko,T., Nakamura,Y., Kotani,H., Kato,T., Asamizu,E., Miyajima,N., Sasamoto,S., Kimura,T., Hosouchi,T., Kawashima,K., Kohara,M., Matsumoto,M., Matsuno,A., Muraki,A., Nakayama,S., Nakazaki,N., Naruo,K., Okumura,S., Shinpo,S., Takeuchi,C., Wada,T., Watanabe,A., Yamada,M., Yasuda,M., Sato,S., de la Bastide,M., Huang,E., Spiegel,L., Gnoj,L., O'Shaughnessy,A., Preston,R., Habermann,K., Murray,J., Johnson,D., Rohlfing,T., Nelson,J., Stoneking,T., Pepin,K., Spieth,J., Sekhon,M., Armstrong,J., Becker,M., Belter,E., Cordum,H., Cordes,M., Courtney,L., Courtney,W., Dante,M., Du,H., Edwards,J., Fryman,J., Haakensen,B., Lamar,E., Latreille,P., Leonard,S., Meyer,R., Mulvaney,E., Ozersky,P., Riley,A., Strowmatt,C., Wagner-McPherson,C., Wollam,A., Yoakum,M., Bell,M., Dedhia,N., Parnell,L., Shah,R., Rodriguez,M., See,L.H., Vil,D., Baker,J., Kirchoff,K., Toth,K., King,L., Bahret,A., Miller,B., Marra,M., Martienssen,R., McCombie,W.R., Wilson,R.K., Murphy,G., Bancroft,I., Volckaert,G., Wambutt,R., Dusterhoft,A., Stiekema,W., Pohl,T., Entian,K.D., Terryn,N., Hartley,N., Bent,E., Johnson,S., Langham,S.A., McCullagh,B., Robben,J., Grymonprez,B., Zimmermann,W., Ramsperger,U., Wedler,H., Balke,K., Wedler,E., Peters,S., van Staveren,M., Dirkse,W., Mooijman,P., Lankhorst,R.K., Weitzenegger,T., Bothe,G., Rose,M., Hauf,J., Berneiser,S., Hempel,S., Feldpausch,M., Lamberth,S., Villarroel,R., Gielen,J., Ardiles,W., Bents,O., Lemcke,K., Kolesov,G., Mayer,K., Rudd,S., Schoof,H., Schueller,C., Zaccaria,P., Mewes,H.W., Bevan,M. and Fransz,P. CONSRTM Kazusa DNA Research Institute; Cold Spring Harbor and Washington University in St Louis Sequencing Consortium; European Union Arabidopsis Genome Sequencing Consortium TITLE Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana JOURNAL Nature 408 (6814), 823-826 (2000) PUBMED 11130714 REFERENCE 2 (bases 1 to 2575) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2575) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2575) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003076). On Sep 12, 2016 this sequence version replaced NM_180788.2. FEATURES Location/Qualifiers source 1..2575 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="5" /ecotype="Columbia" gene 1..2575 /gene="BIP2" /locus_tag="AT5G42020" /gene_synonym="BIP; luminal binding protein; MJC20.12; MJC20_12" /note="Luminal binding protein (BiP2) involved in polar nuclei fusion during proliferation of endosperm nuclei." /db_xref="Araport:AT5G42020" /db_xref="GeneID:834207" /db_xref="TAIR:AT5G42020" CDS 214..2220 /gene="BIP2" /locus_tag="AT5G42020" /gene_synonym="BIP; luminal binding protein; MJC20.12; MJC20_12" /inference="Similar to RNA sequence, EST:INSD:ES168921.1,INSD:DR356234.1,INSD:DR356212.1, INSD:DR356241.1,INSD:EL313291.1,INSD:ES098183.1, INSD:DR223876.1,INSD:AV548290.1,INSD:ES082467.1, INSD:AV441875.1,INSD:BP836372.2,INSD:AV809473.1, INSD:ES050747.1,INSD:BP868951.1,INSD:EG420286.1, INSD:EH881092.1,INSD:DR356193.1,INSD:EH938543.1, INSD:ES170645.1,INSD:ES144688.1,INSD:DR356195.1, INSD:BP805280.1,INSD:BP595145.1,INSD:DR356267.1, INSD:ES115135.1,INSD:ES135836.1,INSD:EH939447.1, INSD:ES060627.1,INSD:EH865112.1,INSD:DR356201.1, INSD:EL148301.1,INSD:EH970584.1,INSD:DR223874.1, INSD:EL068628.1,INSD:DR356229.1,INSD:AV540547.1, INSD:DR356224.1,INSD:EL983864.1,INSD:EL179061.1, INSD:EL093497.1,INSD:EL101734.1,INSD:ES169364.1, INSD:EG509369.1,INSD:DR356219.1,INSD:EH824283.1, INSD:ES011471.1,INSD:ES203184.1,INSD:DR356228.1, INSD:EL081204.1,INSD:DR356236.1,INSD:CB264886.1, INSD:EH879682.1,INSD:ES142946.1,INSD:DR356248.1, INSD:EH982921.1,INSD:DR356194.1,INSD:EL247614.1, INSD:EH811010.1,INSD:EL978122.1,INSD:DR356215.1, INSD:DR356202.1,INSD:EH987073.1,INSD:ES112124.1, INSD:EL264724.1,INSD:DR356262.1,INSD:DR356256.1, INSD:DR356257.1,INSD:DR356217.1,INSD:AV543242.1, INSD:EL238653.1,INSD:BP587138.1,INSD:EL251810.1, INSD:ES140598.1,INSD:DR356261.1,INSD:DR356269.1, INSD:ES115726.1,INSD:ES070907.1,INSD:BP828097.1, INSD:DR356218.1,INSD:ES070376.1,INSD:DR356242.1, INSD:BP655271.1,INSD:ES184853.1,INSD:ES160255.1, INSD:ES148979.1,INSD:AV439579.1,INSD:ES153475.1, INSD:EH892043.1,INSD:AV803657.1,INSD:DR356208.1, INSD:DR356203.1,INSD:DR356221.1,INSD:DR356230.1, INSD:EH920033.1,INSD:ES201441.1,INSD:EL996841.1, INSD:DR356216.1,INSD:DR356231.1,INSD:BP651966.1, INSD:EL988657.1,INSD:AV541638.1,INSD:DR383087.1, INSD:H76451.1,INSD:ES081231.1,INSD:BP846824.1, INSD:ES061450.1,INSD:AV564726.1,INSD:EL985908.1, INSD:ES149903.1,INSD:ES172000.1,INSD:ES146321.1, INSD:EL970580.1,INSD:EL262612.1,INSD:EL037573.1, INSD:EH863561.1,INSD:ES115227.1,INSD:DR356233.1, INSD:DR356251.1,INSD:ES014618.1,INSD:ES160556.1, INSD:BP638386.1,INSD:BP853947.2,INSD:EL175763.1, INSD:ES047875.1,INSD:BP627047.1,INSD:ES171464.1, INSD:AV817024.1,INSD:BP816072.1,INSD:EH798587.1, INSD:BP564819.1,INSD:EL177629.1,INSD:N96728.1, INSD:ES103219.1,INSD:DR356225.1,INSD:AV806444.1, INSD:DR356247.1,INSD:ES024716.1,INSD:DR356240.1, INSD:EL273769.1,INSD:ES113697.1,INSD:EL230047.1, INSD:DR356232.1,INSD:AV550717.1,INSD:DR356227.1, INSD:EH825103.1,INSD:DR356255.1,INSD:ES077739.1, INSD:ES173122.1,INSD:EL283345.1,INSD:DR356239.1, INSD:DR356220.1,INSD:W43480.1,INSD:DR356222.1, INSD:EL978588.1,INSD:DR356207.1,INSD:EL215293.1, INSD:AV539474.1,INSD:DR356200.1,INSD:AV546870.1, INSD:DR356235.1,INSD:ES045480.1,INSD:ES180691.1, INSD:AV561595.1,INSD:BP844095.1,INSD:CB256764.1, INSD:EL111286.1,INSD:ES147744.1,INSD:DR356199.1, INSD:BE526855.1,INSD:AV815780.1,INSD:EH980388.1, INSD:ES018598.1,INSD:DR356264.1,INSD:DR356266.1, INSD:EL986900.1,INSD:AV558210.1,INSD:CB265061.1, INSD:AV541511.1,INSD:DR356206.1,INSD:DR356252.1, INSD:DR356250.1,INSD:ES055040.1,INSD:DR356198.1, INSD:DR356223.1,INSD:ES098242.1,INSD:DR356237.1, INSD:EL256661.1,INSD:EL121452.1,INSD:EL110541.1, INSD:DR356243.1,INSD:DR356268.1,INSD:ES077385.1, INSD:CA781970.1,INSD:EL114736.1,INSD:EL997506.1, INSD:ES072119.1,INSD:ES133825.1,INSD:ES129931.1, INSD:ES159843.1,INSD:H37335.1,INSD:EH868446.1, INSD:EL976160.1,INSD:ES080614.1,INSD:BE525741.1, INSD:BP618427.1,INSD:BU636655.1,INSD:ES039710.1, INSD:DR372247.1,INSD:AV566168.1,INSD:EL978133.1, INSD:EL978049.1,INSD:AV540558.1,INSD:EL178619.1, INSD:EH964992.1,INSD:DR356197.1,INSD:EH989302.1, INSD:DR356258.1,INSD:ES172639.1,INSD:DR356254.1, INSD:ES018006.1,INSD:ES174426.1,INSD:EL241854.1, INSD:BP859454.1,INSD:DR356265.1,INSD:DR356209.1, INSD:EL028416.1,INSD:DR356191.1,INSD:EH901439.1, INSD:DR223867.1,INSD:BP825290.1,INSD:EL023517.1, INSD:DR356246.1,INSD:EG480821.1,INSD:BP586736.1, INSD:ES093372.1,INSD:DR383113.1,INSD:ES199304.1, INSD:ES187822.1,INSD:ES193733.1,INSD:ES186959.1, INSD:ES151151.1,INSD:BP778599.1,INSD:EH883409.1, INSD:DR356253.1,INSD:EH980340.1,INSD:EL315557.1, INSD:ES081371.1,INSD:EL265358.1,INSD:DR356238.1, INSD:DR356204.1,INSD:EH829211.1,INSD:EH878841.1, INSD:ES032436.1,INSD:DR310946.1,INSD:ES201665.1, INSD:DR356226.1,INSD:EL077458.1,INSD:DR383109.1, INSD:ES185033.1,INSD:EL135151.1,INSD:EL123140.1, INSD:EL026056.1,INSD:ES043338.1,INSD:EL116908.1, INSD:ES014969.1,INSD:EH977578.1,INSD:EL991772.1, INSD:EL168208.1,INSD:ES117428.1,INSD:ES127105.1, INSD:ES081310.1,INSD:EH877898.1,INSD:ES216248.1, INSD:BP590330.1,INSD:ES175489.1,INSD:DR356214.1, INSD:DR356210.1,INSD:EH969010.1,INSD:BP837201.2, INSD:EH909925.1,INSD:EL132409.1,INSD:DR356260.1, INSD:EH855602.1,INSD:T45442.1,INSD:EH930782.1, INSD:DR356245.1,INSD:AI100133.1,INSD:BP848973.2, INSD:ES135570.1,INSD:ES130412.1,INSD:ES094990.1, INSD:EL006262.1,INSD:ES177931.1,INSD:EL127094.1, INSD:ES061788.1,INSD:DR356259.1,INSD:ES097373.1, INSD:BP594376.1,INSD:DR223869.1,INSD:ES020304.1, INSD:DR223868.1,INSD:DR360814.1,INSD:CK119095.1, INSD:EH947189.1,INSD:ES008902.1,INSD:BP649089.1, INSD:F15560.1,INSD:ES190259.1,INSD:EL072344.1, INSD:EL207675.1,INSD:ES179928.1,INSD:ES124907.1, INSD:BP588412.1,INSD:ES000503.1,INSD:AV782657.1, INSD:AV556452.1,INSD:Z34055.1,INSD:DR370424.1, INSD:EL029822.1,INSD:DR223870.1,INSD:ES131515.1, INSD:BP652334.1,INSD:EL301775.1,INSD:EL994269.1, INSD:AV560888.1,INSD:DR356249.1,INSD:AV806556.1, INSD:CB074938.1,INSD:ES108945.1,INSD:DR356263.1, INSD:AV814067.1" /inference="similar to RNA sequence, mRNA:INSD:D84414.1,INSD:BT002392.1,INSD:BT008406.1" /note="BIP2; FUNCTIONS IN: ATP binding; INVOLVED IN: protein folding, response to cadmium ion, response to heat, polar nucleus fusion, response to endoplasmic reticulum stress; LOCATED IN: in 8 components; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: seedling growth, seed development stages; CONTAINS InterPro DOMAIN/s: Heat shock protein 70, conserved site (InterPro:IPR018181), Heat shock protein Hsp70 (InterPro:IPR001023), Heat shock protein 70 (InterPro:IPR013126); BEST Arabidopsis thaliana protein match is: heat shock protein 70 (Hsp 70) family protein (TAIR:AT5G28540.1); Has 36681 Blast hits to 36078 proteins in 4871 species: Archae - 169; Bacteria - 17752; Metazoa - 3980; Fungi - 1822; Plants - 1284; Viruses - 342; Other Eukaryotes - 11332 (source: NCBI BLink)." /codon_start=1 /product="Heat shock protein 70 (Hsp 70) family protein" /protein_id="NP_851119.1" /db_xref="GeneID:834207" /db_xref="TAIR:AT5G42020" /db_xref="Araport:AT5G42020" /translation="
MARSFGANSTVVLAIIFFGCLFAFSTAKEEATKLGSVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVGFTDSERLIGEAAKNQAAVNPERTVFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDHRIMEYFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDLSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGVPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKEKIDARNALETYVYNMKNQVSDKDKLADKLEGDEKEKIEAATKEALEWLDENQNSEKEEYDEKLKEVEAVCNPIITAVYQRSGGAPGAGGESSTEEEDESHDEL"
misc_feature 316..2175 /gene="BIP2" /locus_tag="AT5G42020" /gene_synonym="BIP; luminal binding protein; MJC20.12; MJC20_12" /note="heat shock 70 kDa protein; Provisional; Region: PTZ00009" /db_xref="CDD:240227" ORIGIN
ttatagatcgtcgtaagataattggtccacgtcatctccgatgacatagttaaatttcttcgtcttccataaaaagcgactacttcaccatcaccttcgggcactggacctatttaagcatcctaacttcttcttcaaagcttaaaaaccagaaaacaaaaggaagctctctgttcaaatcaaaaagagagatcgtacgcaaaagtttccgatatggctcgctcgtttggagcaaacagcactgttgtgcttgcgatcatcttcttcggatgtttatttgcgttttccactgcaaaagaagaggctacgaagttaggatcagttattgggatagatcttggtaccacttactcttgtgttggtgtttacaagaatggtcatgttgaaattattgccaatgaccaaggaaaccgtattacaccttcatgggttggttttactgactctgaaaggctcattggtgaggctgctaagaatcaggcggctgttaatcctgagaggactgtcttcgacgttaagagattgatcgggcgaaaatttgaggacaaggaggttcaaaaggacaggaaacttgtaccttaccagattgtgaacaaggatggtaagccatacattcaagtcaagatcaaggatggtgagactaaggttttcagtcctgaggagatcagtgccatgattctgactaagatgaaggagacagccgaagcctaccttggaaagaaaatcaaggacgctgttgtcactgttccagcttacttcaatgatgctcaaaggcaagctaccaaggatgccggtgttattgctgggctcaatgttgctagaatcatcaacgaacctactgctgctgctattgcctacggtcttgataagaagggtggtgagaagaacatccttgtatttgaccttggtggtggtacttttgatgtcagtgtcttgaccattgataacggagtgtttgaggttctctccacaaatggtgacactcacttgggaggtgaggactttgaccacaggatcatggagtacttcatcaagttaattaagaagaagcaccagaaggacatcagcaaggacaacaaggctcttggtaagctccgaagggaatgtgagagggcaaagagagctctaagcagtcagcaccaagtccgtgtagagattgagtcactctttgatggtgttgatttatctgagccactcaccagagctcgtttcgaggagcttaacaatgatttgttcaggaagaccatgggacctgtgaagaaggccatggatgatgccggtctacagaagagccagatcgatgagattgtccttgttggtggaagcaccaggatcccaaaggttcagcaactgttgaaggacttctttgaaggtaaagagccaaacaagggtgtgaaccccgacgaggctgttgcctatggtgctgctgttcagggtggtattttgagcggagaaggcggtgatgagaccaaagatatccttcttcttgatgttgcgccactcactttaggtatcgagactgtaggaggagtgatgacaaagttgatcccaagaaacacggttattccaaccaagaaatctcaggttttcacaacgtaccaagaccagcagaccaccgtctccattcaggtctttgaaggtgaaagaagtctcaccaaggactgcaggctactcgggaaattcgacctcactggagtcccaccggccccaagaggaacccctcaaatcgaggtcacatttgaagtggacgccaacggtattcttaatgtgaaagcagaggacaaggcgagtggtaaatcagagaagattacaatcacaaacgagaagggtcgtctgagccaagaagagattgaccggatggtgaaggaggcagaggagtttgcagaggaagacaagaaggtgaaggagaagatcgacgccaggaatgccctggagacatacgtgtacaacatgaagaaccaagtgagcgacaaggacaagcttgcagacaaattggaaggagatgagaaggagaagatagaagcagcgacgaaagaggccttggagtggctcgacgagaaccaaaactcagagaaagaagagtacgacgagaagctcaaggaggtagaggcagtgtgtaacccaatcatcacagcagtttaccagagatcaggcggagcaccaggtgcaggaggagaatcatcgactgaggaggaagatgagtctcacgatgagctctagatgtcttctgttattgttaatttattaaaccatagagacaagttttgaggatgaaacgtcgtttttgttttttgtatttggtttcctttttcttatggatttttaggaaaggggagagattaagtagcgtcccttctttagtctccctggacgttctctttatgttcatctgataactttacttcttcataacaaataccttttttctattcaacatcagatacactctatgcaccaagttacatcgataaagttttaaaagtaagtaacgtggggttaacatttctccaaggatgaaggatcataagtcgcaagttacattttgacaatgaattggtgcctttgggaatttgca
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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