2024-09-29 03:53:40, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_130163 929 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana LDL receptor wingless signaling/trafficking chaperone (AT2G46000), mRNA. ACCESSION NM_130163 VERSION NM_130163.3 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 929) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 929) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 929) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 929) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Apr 18, 2007 this sequence version replaced NM_130163.2. FEATURES Location/Qualifiers source 1..929 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..929 /locus_tag="AT2G46000" /gene_synonym="F4I18.48" /db_xref="Araport:AT2G46000" /db_xref="GeneID:819208" /db_xref="TAIR:AT2G46000" CDS 133..759 /locus_tag="AT2G46000" /gene_synonym="F4I18.48" /inference="Similar to RNA sequence, EST:INSD:ES130040.1,INSD:DR335744.1,INSD:BP591151.1, INSD:AV796257.1,INSD:ES064490.1,INSD:AV814544.1, INSD:ES160118.1,INSD:DR204047.1,INSD:DR335745.1, INSD:EL078999.1,INSD:DR373120.1,INSD:BP631635.1, INSD:EL116606.1,INSD:BP604099.1,INSD:BP830544.1, INSD:DR204061.1,INSD:ES047153.1,INSD:ES152024.1, INSD:AA394542.1,INSD:DR204056.1,INSD:ES040374.1, INSD:ES023444.1,INSD:DR204059.1,INSD:DR204057.1, INSD:EL265027.1,INSD:DR335743.1,INSD:EL326054.1, INSD:DR204048.1,INSD:BP792673.1,INSD:DR204050.1, INSD:EL970359.1,INSD:Z26700.1,INSD:DR204053.1, INSD:ES032431.1,INSD:DR204052.1,INSD:DR373112.1, INSD:EL991359.1,INSD:DR204051.1,INSD:DR204058.1, INSD:DR204064.1,INSD:DR204054.1,INSD:EH969688.1, INSD:ES136620.1,INSD:BP596285.1,INSD:DR204063.1, INSD:DR204055.1,INSD:BP583689.1,INSD:BP608837.1, INSD:BP782480.1,INSD:EL270491.1,INSD:DR204060.1, INSD:DR204049.1,INSD:AV784442.1,INSD:BP667022.1, INSD:DR204062.1,INSD:ES077888.1,INSD:EL988055.1, INSD:DR204065.1" /inference="similar to RNA sequence, mRNA:INSD:BT024922.1,INSD:AY085936.1,INSD:AK176087.1" /note="FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Mesoderm development candidate 2 (InterPro:IPR019330); Has 31 Blast hits to 31 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink)." /codon_start=1 /product="LDL receptor wingless signaling/trafficking chaperone" /protein_id="NP_566061.1" /db_xref="Araport:AT2G46000" /db_xref="GeneID:819208" /db_xref="TAIR:AT2G46000" /translation="
MEKIVRSSSLILLVGLLLFMNFHGFVRIAEATKRRIEISDDLDDVEDNEEDESWKEWGKKATTPEFDPPPDFTNMGFDQIQEEMAKRTFGTVVGFVKLRLGVPRTKDVVIDIAMKWTKVLRTGGIGVRFMAVDRSTVMFNMQNGKLVTELREFVLSQEEAYEVKIGKQEFRRPGDPPFEDVFDKFQAEQRKDHEDGDGNKNDLTKDEL"
ORIGIN
aagtaaaaagtcacattattatggttttgtgacttgtgtgcgagtttgtagaagctttactgatatagaaatgccgttgccgatgcagtctctcttcctctgtttctgattcctgaataaatttgttaaacgatggagaagatcgttcgttcttcttcgctgattctacttgttggcctccttctttttatgaattttcacggatttgtccggatcgccgaagcaacgaagcgacggatcgagatctccgatgacctagacgacgttgaagacaatgaagaagacgagtcatggaaagagtgggggaagaaagcaacgaccccggaatttgatccgcctccggatttcaccaatatgggattcgatcagatccaagaggaaatggctaaacggacttttggaaccgtcgtcggtttcgtcaagctccggttaggcgtcccccgtaccaaggatgtggtgattgatattgctatgaaatggacaaaagttttaagaacaggagggataggagtaagattcatggctgtagatcgaagcacagtgatgttcaatatgcaaaatgggaagcttgtgactgagctaagggaattcgtgctgagccaagaagaagcttacgaggtcaagatagggaagcaagagtttagaagacctggagatcctccatttgaagatgtctttgacaaatttcaagctgagcaaaggaaagatcacgaagatggtgatggtaacaagaatgatcttactaaggatgaattataggtcacagaaaagcttctataatgggtagtactgaaagttcaactcttttactgaatcttacctaaacatgtttggtttttagtttccgttgaatgccgtagaatacaataaagaggaaagctttgtttcttttccaatgagtatatgcactcatttaagcttattgctaa
//
by
@meso_cacase at
DBCLS
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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