2024-09-29 03:54:36, GGRNA.v2 : RefSeq release 225 (Jul, 2024)
LOCUS NM_130013 2371 bp mRNA linear PLN 20-OCT-2022 DEFINITION Arabidopsis thaliana O-fucosyltransferase family protein (AT2G44500), mRNA. ACCESSION NM_130013 VERSION NM_130013.4 DBLINK BioProject: PRJNA116 BioSample: SAMN03081427 KEYWORDS RefSeq. SOURCE Arabidopsis thaliana (thale cress) ORGANISM Arabidopsis thaliana Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis. REFERENCE 1 (bases 1 to 2371) AUTHORS Lin,X., Kaul,S., Rounsley,S., Shea,T.P., Benito,M.I., Town,C.D., Fujii,C.Y., Mason,T., Bowman,C.L., Barnstead,M., Feldblyum,T.V., Buell,C.R., Ketchum,K.A., Lee,J., Ronning,C.M., Koo,H.L., Moffat,K.S., Cronin,L.A., Shen,M., Pai,G., Van Aken,S., Umayam,L., Tallon,L.J., Gill,J.E., Adams,M.D., Carrera,A.J., Creasy,T.H., Goodman,H.M., Somerville,C.R., Copenhaver,G.P., Preuss,D., Nierman,W.C., White,O., Eisen,J.A., Salzberg,S.L., Fraser,C.M. and Venter,J.C. TITLE Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana JOURNAL Nature 402 (6763), 761-768 (1999) PUBMED 10617197 REFERENCE 2 (bases 1 to 2371) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (19-OCT-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 2371) AUTHORS Krishnakumar,V., Cheng,C.-Y., Chan,A.P., Schobel,S., Kim,M., Ferlanti,E.S., Belyaeva,I., Rosen,B.D., Micklem,G., Miller,J.R., Vaughn,M. and Town,C.D. TITLE Direct Submission JOURNAL Submitted (17-MAY-2016) Plant Genomics, J. Craig Venter Institute, 9704 Medical Center Dr, Rockville, MD 20850, USA REMARK Protein update by submitter REFERENCE 4 (bases 1 to 2371) AUTHORS Swarbreck,D., Lamesch,P., Wilks,C. and Huala,E. CONSRTM TAIR TITLE Direct Submission JOURNAL Submitted (18-FEB-2011) Department of Plant Biology, Carnegie Institution, 260 Panama Street, Stanford, CA, USA COMMENT REVIEWED REFSEQ: This record has been curated by TAIR and Araport. This record is derived from an annotated genomic sequence (NC_003071). On Sep 12, 2016 this sequence version replaced NM_130013.3. FEATURES Location/Qualifiers source 1..2371 /organism="Arabidopsis thaliana" /mol_type="mRNA" /db_xref="taxon:3702" /chromosome="2" /ecotype="Columbia" gene 1..2371 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /db_xref="Araport:AT2G44500" /db_xref="GeneID:819057" /db_xref="TAIR:AT2G44500" CDS 286..2007 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /inference="Similar to RNA sequence, EST:INSD:BP597770.1,INSD:BP560962.1,INSD:BP798053.1, INSD:EL128245.1,INSD:AV820246.1,INSD:CB255170.1, INSD:DR354621.1,INSD:BP824002.1,INSD:EH847016.1, INSD:EL260072.1,INSD:BP799479.1,INSD:BE520571.1, INSD:BP800697.1,INSD:BP608940.1,INSD:AV537740.1, INSD:DR363389.1,INSD:AV547353.1,INSD:BE520246.1, INSD:ES056039.1,INSD:BP601182.1,INSD:CD531677.1, INSD:BP592594.1,INSD:BX834195.1,INSD:EL184113.1, INSD:DR383531.1,INSD:BE521417.1,INSD:BE520245.1, INSD:CD534306.1,INSD:BE521418.1,INSD:AV534254.1, INSD:BP816644.1,INSD:BP567288.1,INSD:BP636884.1, INSD:N96361.1,INSD:BP651721.1,INSD:EL189954.1, INSD:BP856757.1,INSD:ES174535.1,INSD:BP619334.1, INSD:AV557930.1,INSD:ES207054.1,INSD:BX836997.1, INSD:BX837994.1,INSD:EL215602.1,INSD:AV819611.1, INSD:BP606438.1,INSD:EH833376.1,INSD:EL095447.1, INSD:ES190524.1" /inference="similar to RNA sequence, mRNA:INSD:AK220874.1,INSD:AY093801.1,INSD:AY050384.1, INSD:AF370605.1" /note="O-fucosyltransferase family protein; CONTAINS InterPro DOMAIN/s: GDP-fucose protein O-fucosyltransferase (InterPro:IPR019378); BEST Arabidopsis thaliana protein match is: O-fucosyltransferase family protein (TAIR:AT3G07900.1); Has 821 Blast hits to 820 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 820; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink)." /codon_start=1 /product="O-fucosyltransferase family protein" /protein_id="NP_181978.1" /db_xref="Araport:AT2G44500" /db_xref="GeneID:819057" /db_xref="TAIR:AT2G44500" /translation="
MALSKNSNSNSFNKKKVSYISVPSQIINSLSSSSLQSLLVSPKKSSRSTNRFSFSYRNPRIWFFTLFLVSLFGMLKLGFNVDPISLPFSRYPCSTTQQPLSFDGEQNAASHLGLAQEPILSTGSSNSNAIIQLNGGKNETLLTEGDFWKQPDGLGFKPCLGFTSQYRKDSNSILKNRWKYLLVVVSGGMNQQRNQIVDAVVIARILGASLVVPVLQVNVIWGDESEFADIFDLEHFKDVLADDVHIVSSLPSTHVMTRPVEEKRTPLHASPQWIRAHYLKRINRERVLLLRGLDSRLSKDLPSDLQKLRCKVAFQALRFSPRILELGNKLASRMRNQGQYLSLHLRMEKDVWVRTGCLPGLTPEYDEIVNSERERHPELLTGRSNMTYHERKLAGLCPLTALEVTRLLKALEAPKDARIYWAGGEPLGGKEVLEPLTKEFPQFYNKHDLALPGELEPFANKASVMAAIDYIVCEKSDVFIPSHGGNMGHALQGQRAYAGHKKYITPNKRQMLPYFMNSSLPESDFNRIVKDLHRESLGQPELRMSKAGKDVTKHPVPECMCSDRQQQEQQSDA"
misc_feature 823..1791 /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /note="GDP-fucose protein O-fucosyltransferase, plant specific subfamily; Region: O-FucT_plant; cd11299" /db_xref="CDD:211385" misc_feature order(847..858,1315..1317,1321..1323,1549..1557, 1681..1683,1738..1746) /locus_tag="AT2G44500" /gene_synonym="F4I1.31" /note="GDP-Fucose binding site [chemical binding]; other site" /db_xref="CDD:211385" ORIGIN
aattaacaaaacagttaaacaaattcaaaataaaaactgccatgtggtctctttcttctctgtttctctctcccttcctttaagaacgcgtttgcagactttgatcagacttcgcgttcccgccgcccatctccctctctctctctttttctctctcacacgtttcttttttgtctctctccctgattcatcgccgtagctgtgtgaccgaacattgctgcgagttcctcaaaacccaaatctttcttcctcaaagactctgttttttctttcttcctttcttcaatggcgttatcgaaaaacagtaacagtaacagctttaacaagaagaaagtttcgtatatctcagtcccttctcagatcataaactctttatcatcttcctcattacaatctcttcttgtttctcccaagaaatcatcaagaagcaccaacagattcagcttctcttataggaaccctagaatctggttctttactctcttcctcgtctcactctttggaatgttgaaactcggtttcaacgttgacccaatctctctccctttctcacgttacccttgttcaacgacccaacaaccactaagcttcgacggagaacaaaacgctgcatcccatcttggtttggctcaagagccgattttgtctactgggtcatcgaattcgaatgcgattatacaattaaacggtggaaagaacgagactttgttaacggaaggtgatttctggaagcaacctgatgggttagggtttaagccctgtttgggatttacaagtcaatatagaaaagatagcaattcgattttgaagaacagatggaagtatttgcttgttgttgtctctggtgggatgaatcagcaaaggaatcagattgttgatgctgttgtgatcgctaggatccttggagcttctttagttgttcctgttttgcaggttaatgtcatttggggagacgaaagtgaatttgcggatatattcgatttggagcatttcaaggatgttttagcagatgatgttcatatagtttcgtctttaccttctacacatgttatgacgagacctgttgaagagaagaggactccacttcatgcttctcctcaatggattcgtgctcattatcttaagcgaattaacagagaaagagttttacttctccgtggactcgattcaagactctccaaagacctcccttcagatcttcagaaactccgatgcaaggttgctttccaagcgcttagattttctccgaggattcttgaactcggtaataaactagcttcaagaatgcgtaaccaaggacagtatctctcacttcatctaagaatggagaaagatgtttgggttagaactggttgtctccctggtttaactcccgagtacgatgaaatagtcaacagcgaaagagaacgacaccctgagcttcttaccggtagatcaaacatgacttatcacgagagaaaacttgccggtttatgccctttaactgctctagaagtcacaaggctgcttaaagcattagaagctccaaaggatgcgagaatctattgggcaggaggagagcctctaggaggaaaagaggttttggagccactaactaaagaattccctcagttctacaacaagcacgatcttgctttacctggcgagcttgaaccatttgccaacaaagcttcggttatggctgctatagactacattgtctgcgaaaagagcgatgttttcataccgtctcatggaggaaatatgggacacgcgttacaagggcaaagagcttacgctggtcacaagaaatacatcactcctaataagagacagatgcttccttatttcatgaactcgtcgcttcctgaatcggattttaacagaattgtgaaagatcttcatcgagaatcgctaggacagccggagttgagaatgagcaaagctggtaaagatgttacaaaacatcctgttccagagtgtatgtgctcggatagacaacaacaagaacaacagtccgatgcttaagccttgaaggacattttggacattatttggtgcgcggaaaatgaagaagacgccgattttttcccgatcacccggaagattgattgaggaagacgattcatggtggttcgtgcgatattcttttagttcgggttttaatctgatcattttttcaaaatcttttggagtaaatatatattcgtttcaactgaggttatttttttcttacatgtttttacgatatacgtgagaagtagaatagtgaggttataagatatgattctttgattcgatttatttgggctgtaattatatattacagagtttgtatacggttctagttgtacttgtactataaataaagcaacagttaatcatctcctcc
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Creative Commons Attribution 4.0 International License (CC BY 4.0).
If you use GGRNA in your work, please cite:
Naito Y, Bono H. (2012)
GGRNA: an ultrafast, transcript-oriented search engine for genes and transcripts.
Nucleic Acids Res., 40, W592-W596.
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